Rh3BG083400

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012167
Physical Location & Seq
Forward (+)
6548874 .. 6549632
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG083400.1

Sequence Viewer

Length: 759 bp
ATGGCGGCGTCGGATAACCTAGCAGCGATGGAGCCGTGGGCGTACAGGCCGACGACGACGTTTGCGGACTCGTGGATCTCGGAGGCGTTTGCGAGGGACACTAAGGCGCTGACGATGGCGCTGCAGAAGTCGCTGGCGGACAACAGGAGCTCGGAATCTCCGGATTCCGAGTTCTTGCCCTTTTTTGATACGTTTCAGGCGGAAACGACGGCTACGCCGACTGTTTCCGGGGTTTCGGGGTCGGATCCGGAGTCGGTTGCGGCGCCGAAGCTGCGGCAGAGGAACACGGTTCCGGTTTCGGGGGGCAAGGTGACGAAACGGAAGTCGCGCGCGTCGAAGCGGACGCAGACGACGTTCATCACGGCGGACCCGGCGAACTTCCGGCAGATGGTGCAGCAGGTGACGGGGGTGAGGTTTAACGGACAGCAGTTCTCTTCGCTGCCGACGGTTGTCAAGCCCGAGCCGCAGAGACCCGGCGGCAATCGCTTACCGGGCGGCGGGTGCTTGCCGACGCTCGACACGTCGGCGTTGTTGTTCGACCACCATCAACAGCAGCAGCAGCAGCAGCAGCAGAGGCAGCAGTACCAGCAGCAGGTTGTGGGGCCCGCATCGGCAACGGGAGGAGGTGGACAGATGGGACCAATGCGCTATGGGGCGACGGTGGAGGTGGCTGAGGGTGGTGGTGGCGTCTCTGGCGGGGGATTAGGCTTTGACTCTTATTCGAGCTTTCCCACTTTGGAGTCGTGGAAGGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

252

Amino Acids

27.0

Weight (kDa)

8.73

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 115 - 136 2.8e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 2 cut(s) 388, 583
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 3 cut(s) 328, 330, 332
AccIII TCCGGA 2 cut(s) 160, 247
AclWI GGATC 3 cut(s) 83, 239, 252
AcyI GRCGYC 3 cut(s) 8, 263, 687
AfaI GTAC 2 cut(s) 44, 584
AfiI CCNNNNNNNGG 4 cut(s) 299, 388, 497, 592
AflIII ACRYGT 1 cut(s) 519
AjiI CACGTC 1 cut(s) 522
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 150, 271, 726
AluI AGCT 3 cut(s) 150, 271, 726
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 463, 694
AlwI GGATC 3 cut(s) 83, 239, 252
Ama87I CYCGRG 1 cut(s) 458
Aor13HI TCCGGA 2 cut(s) 160, 247
AoxI GGCC 2 cut(s) 47, 602
ApaI GGGCCC 1 cut(s) 606
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 6 cut(s) 109, 121, 265, 330, 332, 648
AspS9I GGNCC 4 cut(s) 367, 602, 603, 638
AsuC2I CCSGG 4 cut(s) 229, 371, 474, 492
AsuHPI GGTGA 3 cut(s) 322, 412, 421
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 2 cut(s) 367, 638
BaeGI GKGCMC 1 cut(s) 606
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 152, 606
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 672
BccI CCATC 5 cut(s) 22, 109, 382, 552, 628
BceAI ACGGC 3 cut(s) 19, 225, 378
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 4 cut(s) 229, 371, 474, 492
BcoDI GTCTC 2 cut(s) 463, 694
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 3 cut(s) 110, 122, 266
BfuAI ACCTGC 2 cut(s) 388, 583
Bme1390I CCNGG 4 cut(s) 229, 371, 474, 492
Bme18I GGWCC 2 cut(s) 367, 638
BmeT110I CYCGRG 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 4 cut(s) 367, 602, 603, 638
BmiI GGNNCC 8 cut(s) 33, 246, 264, 291, 369, 603, 604, 639
BmrFI CCNGG 4 cut(s) 229, 371, 474, 492
BmsI GCATC 1 cut(s) 617
BoxI GACNNNNGTC 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 672
BpuMI CCSGG 4 cut(s) 229, 371, 474, 492
BsaHI GRCGYC 3 cut(s) 8, 263, 687
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 35, 228
BsaWI WCCGGW 3 cut(s) 160, 247, 292
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 388, 497, 592
BseAI TCCGGA 2 cut(s) 160, 247
BseDI CCNNGG 2 cut(s) 35, 228
BseLI CCNNNNNNNGG 4 cut(s) 299, 388, 497, 592
BseMII CTCAG 1 cut(s) 663
BsePI GCGCGC 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 636
BseSI GKGCMC 1 cut(s) 606
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 3 cut(s) 328, 330, 332
BshFI GGCC 2 cut(s) 49, 604
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 8 cut(s) 161, 228, 248, 293, 371, 382, 474, 491
BslFI GGGAC 2 cut(s) 110, 651
BslI CCNNNNNNNGG 4 cut(s) 299, 388, 497, 592
BsmAI GTCTC 2 cut(s) 463, 694
BsmBI CGTCTC 1 cut(s) 694
BsmFI GGGAC 2 cut(s) 110, 651
BsnI GGCC 2 cut(s) 49, 604
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 458
Bsp120I GGGCCC 1 cut(s) 602
Bsp1286I GDGCHC 2 cut(s) 152, 606
Bsp13I TCCGGA 2 cut(s) 160, 247
Bsp143I GATC 2 cut(s) 75, 244
BspANI GGCC 2 cut(s) 49, 604
BspCNI CTCAG 1 cut(s) 664
BspEI TCCGGA 2 cut(s) 160, 247
BspFNI CGCG 3 cut(s) 328, 330, 332
BspLI GGNNCC 8 cut(s) 33, 246, 264, 291, 369, 603, 604, 639
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 2 cut(s) 388, 583
BspPI GGATC 3 cut(s) 83, 239, 252
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 35, 228
BssHII GCGCGC 1 cut(s) 328
BssMI GATC 2 cut(s) 75, 244
BssNI GRCGYC 3 cut(s) 8, 263, 687
BssSI CACGAG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 70
Bst4CI ACNGT 4 cut(s) 223, 289, 448, 661
Bst6I CTCTTC 1 cut(s) 439
BstACI GRCGYC 3 cut(s) 8, 263, 687
BstAPI GCANNNNNTGC 1 cut(s) 391
BstC8I GCNNGC 4 cut(s) 135, 330, 506, 606
BstDEI CTNAG 2 cut(s) 102, 672
BstDSI CCRYGG 1 cut(s) 35
BstFNI CGCG 3 cut(s) 328, 330, 332
BstH2I RGCGCY 3 cut(s) 110, 122, 266
BstHHI GCGC 6 cut(s) 109, 121, 265, 330, 332, 648
BstKTI GATC 2 cut(s) 78, 247
BstMAI GTCTC 2 cut(s) 463, 694
BstMBI GATC 2 cut(s) 75, 244
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 227, 369, 472, 490
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 3 cut(s) 328, 330, 332
BstX2I RGATCY 2 cut(s) 75, 244
BstYI RGATCY 2 cut(s) 75, 244
BsuRI GGCC 2 cut(s) 49, 604
BtgI CCRYGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 522
BveI ACCTGC 2 cut(s) 388, 583
Cac8I GCNNGC 4 cut(s) 135, 330, 506, 606
CfoI GCGC 6 cut(s) 109, 121, 265, 330, 332, 648
Cfr13I GGNCC 4 cut(s) 367, 602, 603, 638
CseI GACGC 4 cut(s) 321, 352, 520, 676
Csp6I GTAC 2 cut(s) 43, 583
CviAII CATG 1 cut(s) 754
CviQI GTAC 2 cut(s) 43, 583
DdeI CTNAG 2 cut(s) 102, 672
DinI GGCGCC 1 cut(s) 264
DpnI GATC 2 cut(s) 77, 246
DpnII GATC 2 cut(s) 75, 244
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
EciI GGCGGA 3 cut(s) 152, 215, 380
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 152, 606
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 367, 638
Eco53kI GAGCTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 602
EcoT38I GRGCYC 2 cut(s) 152, 606
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 694
FaeI CATG 1 cut(s) 757
FaiI YATR 2 cut(s) 651, 755
FaqI GGGAC 2 cut(s) 110, 651
FatI CATG 1 cut(s) 753
FauI CCCGC 3 cut(s) 491, 613, 689
FriOI GRGCYC 2 cut(s) 152, 606
FspBI CTAG 1 cut(s) 20
GlaI GCGC 6 cut(s) 108, 120, 264, 329, 331, 647
HaeII RGCGCY 3 cut(s) 110, 122, 266
HaeIII GGCC 2 cut(s) 49, 604
HapII CCGG 8 cut(s) 161, 228, 248, 293, 371, 382, 474, 491
HgaI GACGC 4 cut(s) 321, 352, 520, 676
HhaI GCGC 6 cut(s) 109, 121, 265, 330, 332, 648
Hin1I GRCGYC 3 cut(s) 8, 263, 687
Hin1II CATG 1 cut(s) 757
Hin6I GCGC 6 cut(s) 107, 119, 263, 328, 330, 646
HinP1I GCGC 6 cut(s) 107, 119, 263, 328, 330, 646
HinfI GANTC 6 cut(s) 68, 155, 164, 251, 713, 740
HpaII CCGG 8 cut(s) 161, 228, 248, 293, 371, 382, 474, 491
HphI GGTGA 3 cut(s) 322, 412, 421
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 5 cut(s) 13, 82, 154, 169, 244
Hpy188III TCNNGA 2 cut(s) 161, 248
Hpy8I GTNNAC 1 cut(s) 629
HpyAV CCTTC 1 cut(s) 742
HpyCH4III ACNGT 4 cut(s) 223, 289, 448, 661
HpyCH4IV ACGT 4 cut(s) 59, 191, 353, 521
HpyCH4V TGCA 2 cut(s) 124, 394
HpyF3I CTNAG 2 cut(s) 102, 672
HpySE526I ACGT 4 cut(s) 59, 191, 353, 521
Hsp92I GRCGYC 3 cut(s) 8, 263, 687
Hsp92II CATG 1 cut(s) 757
HspAI GCGC 6 cut(s) 107, 119, 263, 328, 330, 646
KasI GGCGCC 1 cut(s) 262
Kpn2I TCCGGA 2 cut(s) 160, 247
Kzo9I GATC 2 cut(s) 75, 244
LmnI GCTCC 2 cut(s) 31, 147
LweI GCATC 1 cut(s) 617
MaeI CTAG 1 cut(s) 20
MaeII ACGT 4 cut(s) 59, 191, 353, 521
MaeIII GTNAC 2 cut(s) 310, 400
MalI GATC 2 cut(s) 77, 246
MauBI CGCGCGCG 1 cut(s) 328
MboI GATC 2 cut(s) 75, 244
MboII GAAGA 1 cut(s) 426
MflI RGATCY 2 cut(s) 75, 244
MhlI GDGCHC 2 cut(s) 152, 606
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 4 cut(s) 62, 260, 707, 749
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 76, 87, 273, 405, 567, 614, 617, 658, 667
MroI TCCGGA 2 cut(s) 160, 247
MseI TTAA 1 cut(s) 417
MspI CCGG 8 cut(s) 161, 228, 248, 293, 371, 382, 474, 491
MspR9I CCNGG 4 cut(s) 229, 371, 474, 492
MvnI CGCG 3 cut(s) 328, 330, 332
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 4 cut(s) 229, 371, 474, 492
NdeII GATC 2 cut(s) 75, 244
NlaIII CATG 1 cut(s) 757
NlaIV GGNNCC 8 cut(s) 33, 246, 264, 291, 369, 603, 604, 639
NmuCI GTSAC 2 cut(s) 310, 400
PaqCI CACCTGC 1 cut(s) 388
PauI GCGCGC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 4 cut(s) 215, 332, 350, 518
PfeI GAWTC 2 cut(s) 155, 164
PleI GAGTC 4 cut(s) 62, 259, 707, 748
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 4 cut(s) 62, 259, 707, 748
PshAI GACNNNNGTC 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 8 cut(s) 33, 246, 264, 291, 369, 603, 604, 639
PspOMI GGGCCC 1 cut(s) 602
PspPI GGNCC 4 cut(s) 367, 602, 603, 638
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 75, 244
PteI GCGCGC 1 cut(s) 328
RsaI GTAC 2 cut(s) 44, 584
RsaNI GTAC 2 cut(s) 43, 583
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 2 cut(s) 75, 244
Sau96I GGNCC 4 cut(s) 367, 602, 603, 638
SchI GAGTC 4 cut(s) 62, 260, 707, 749
ScrFI CCNGG 4 cut(s) 229, 371, 474, 492
SduI GDGCHC 2 cut(s) 152, 606
SfaNI GCATC 1 cut(s) 617
SfcI CTRYAG 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 2 cut(s) 367, 638
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 4 cut(s) 227, 369, 472, 490
TaaI ACNGT 4 cut(s) 223, 289, 448, 661
TaiI ACGT 4 cut(s) 62, 194, 356, 524
TaqI TCGA 4 cut(s) 335, 516, 537, 722
TauI GCSGC 6 cut(s) 8, 263, 277, 466, 480, 498
TfiI GAWTC 2 cut(s) 155, 164
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 2 cut(s) 310, 400
Tsp45I GTSAC 2 cut(s) 310, 400
TspDTI ATGAA 1 cut(s) 346
TspGWI ACGGA 2 cut(s) 334, 435
VpaK11BI GGWCC 2 cut(s) 367, 638
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.