Prupe.6G310500_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012167
Physical Location & Seq
Reverse (-)
27841446 .. 27842672
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G310500.1

Sequence Viewer

Length: 768 bp
ATGGCGTCGTCGGAGAACGTAGCGAGCATGATGGAGCCCTGGGCCTTCAGGACCAACACGTTCGCCGACTCGTGGATCTCCGAGACCTTCTCGCGCGACACCAAAACCCTCACCAGGGCCCTCCAGAAGTCTCTCTCCAACAACCCAGAATCGCTAGATTCTTCCTCCGATATGTTCATGCCGTTTCTTAACAACATCCTCCAACCCGACACGGCGCCCACCCCTACTGTTTCGGGGCTGTCCGGCTCGGAGGATCCCGATACGAGCCCAGCGCTGCCGAAACGCCAGCAGCGAAACGCGATTCCGGTGTCCGGTGCTGGTGGCGGCAAGGTTTCGAAACGCAAGTCTCGTGCGGCGAAACGGTCCCAGACGACTTTCATCACGGCGGACCCGAGCAACTTCCGCCAGATGGTGCAACAGGTGACCGGCGTTAGATTCGGTAACGAGCAAGTCCCCTTGGCGTCGATTCTGAAGCCGGAACCTCAGAGACCTGGTAGCCGGTTACCCGGGATTGGTTGCTGCATGCCGACCCTTGATACTTCGGCGTTTCTCCTGGAGCATCACAATCAGCAGCAGCAGCAGCTGGTAGGGCCCACGACGATGACGGGGGCTGGGCTCAACTCGACATTGACTGGGCTTGGCCCAAAGTCGTTTGGGCAGACGAGTATTGGTGATGACGTAGCATCGGCAGGTGGCGTTGCGTCTGGGGGATTAGGTTTTGACTCCTTCTCGAGCTTTCCCACTCTAGAGTCCTGGAAGGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

256

Amino Acids

27.13

Weight (kDa)

7.79

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 680
Acc36I ACCTGC 1 cut(s) 680
AccB1I GGYRCC 1 cut(s) 214
AccII CGCG 3 cut(s) 94, 96, 299
AciI CCGC 4 cut(s) 324, 353, 386, 403
AclWI GGATC 3 cut(s) 83, 248, 261
AcuI CTGAAG 2 cut(s) 31, 491
AcyI GRCGYC 3 cut(s) 5, 215, 461
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 6 cut(s) 72, 114, 115, 311, 409, 512
AflIII ACRYGT 1 cut(s) 57
AjnI CCWGG 5 cut(s) 38, 113, 490, 552, 752
AluBI AGCT 2 cut(s) 583, 735
AluI AGCT 2 cut(s) 583, 735
Alw26I GTCTC 4 cut(s) 77, 135, 351, 481
AlwI GGATC 3 cut(s) 83, 248, 261
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 3 cut(s) 391, 506, 730
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 4 cut(s) 42, 117, 590, 640
ApaI GGGCCC 2 cut(s) 121, 594
ApeKI GCWGC 7 cut(s) 274, 289, 519, 571, 574, 577, 580
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AspLEI GCGC 3 cut(s) 96, 217, 274
AspS9I GGNCC 9 cut(s) 42, 51, 117, 118, 363, 388, 590, 591, 641
AsuC2I CCSGG 2 cut(s) 507, 508
AsuHPI GGTGA 3 cut(s) 103, 433, 683
AsuII TTCGAA 1 cut(s) 335
AvaI CYCGRG 3 cut(s) 391, 506, 730
AvaII GGWCC 3 cut(s) 51, 363, 388
BaeGI GKGCMC 2 cut(s) 121, 594
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 5 cut(s) 39, 121, 269, 594, 618
BauI CACGAG 2 cut(s) 70, 348
BbvI GCAGC 7 cut(s) 261, 301, 506, 583, 586, 589, 592
BccI CCATC 2 cut(s) 25, 403
BceAI ACGGC 3 cut(s) 166, 228, 399
BciT130I CCWGG 5 cut(s) 40, 115, 492, 554, 754
BcnI CCSGG 2 cut(s) 507, 508
BcoDI GTCTC 4 cut(s) 77, 135, 351, 481
BfaI CTAG 2 cut(s) 155, 746
BfoI RGCGCY 2 cut(s) 218, 275
BfuAI ACCTGC 1 cut(s) 680
BisI GCNGC 9 cut(s) 275, 290, 325, 354, 520, 572, 575, 578, 581
BlsI GCNGC 9 cut(s) 276, 291, 326, 355, 521, 573, 576, 579, 582
Bme1390I CCNGG 7 cut(s) 40, 115, 492, 507, 508, 554, 754
Bme18I GGWCC 3 cut(s) 51, 363, 388
BmeT110I CYCGRG 3 cut(s) 391, 506, 730
BmgT120I GGNCC 9 cut(s) 42, 51, 117, 118, 363, 388, 590, 591, 641
BmiI GGNNCC 8 cut(s) 36, 119, 216, 255, 365, 390, 480, 592
BmrFI CCNGG 7 cut(s) 40, 115, 492, 507, 508, 554, 754
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 2 cut(s) 568, 692
BmuI ACTGGG 1 cut(s) 642
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 2 cut(s) 107, 575
Bpu14I TTCGAA 1 cut(s) 335
BpuMI CCSGG 2 cut(s) 507, 508
BsaHI GRCGYC 3 cut(s) 5, 215, 461
BsaI GGTCTC 2 cut(s) 77, 481
BsaJI CCNNGG 5 cut(s) 38, 39, 114, 456, 506
BsaWI WCCGGW 2 cut(s) 304, 311
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 114, 115, 311, 409, 512
Bse118I RCCGGY 2 cut(s) 425, 498
Bse1I ACTGG 1 cut(s) 637
BseBI CCWGG 5 cut(s) 40, 115, 492, 554, 754
BseDI CCNNGG 5 cut(s) 38, 39, 114, 456, 506
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 6 cut(s) 72, 114, 115, 311, 409, 512
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 637
BseSI GKGCMC 2 cut(s) 121, 594
BseXI GCAGC 7 cut(s) 261, 301, 506, 583, 586, 589, 592
BseYI CCCAGC 2 cut(s) 268, 611
Bsh1236I CGCG 3 cut(s) 94, 96, 299
BshFI GGCC 4 cut(s) 44, 119, 592, 642
BshNI GGYRCC 1 cut(s) 214
BsiHKCI CYCGRG 3 cut(s) 391, 506, 730
BsiSI CCGG 7 cut(s) 243, 305, 312, 426, 476, 499, 507
BslFI GGGAC 2 cut(s) 349, 437
BslI CCNNNNNNNGG 6 cut(s) 72, 114, 115, 311, 409, 512
BsmAI GTCTC 4 cut(s) 77, 135, 351, 481
BsmFI GGGAC 2 cut(s) 349, 437
BsnI GGCC 4 cut(s) 44, 119, 592, 642
Bso31I GGTCTC 2 cut(s) 77, 481
BsoBI CYCGRG 3 cut(s) 391, 506, 730
Bsp119I TTCGAA 1 cut(s) 335
Bsp120I GGGCCC 2 cut(s) 117, 590
Bsp1286I GDGCHC 5 cut(s) 39, 121, 269, 594, 618
Bsp143I GATC 2 cut(s) 75, 253
BspACI CCGC 4 cut(s) 324, 353, 386, 403
BspANI GGCC 4 cut(s) 44, 119, 592, 642
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 3 cut(s) 94, 96, 299
BspLI GGNNCC 8 cut(s) 36, 119, 216, 255, 365, 390, 480, 592
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 3 cut(s) 83, 248, 261
BspT104I TTCGAA 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 214
BspTNI GGTCTC 2 cut(s) 77, 481
BsrFI RCCGGY 2 cut(s) 425, 498
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 2 cut(s) 425, 498
BssECI CCNNGG 5 cut(s) 38, 39, 114, 456, 506
BssMI GATC 2 cut(s) 75, 253
BssNI GRCGYC 3 cut(s) 5, 215, 461
BssSI CACGAG 2 cut(s) 70, 348
BssT1I CCWWGG 1 cut(s) 456
Bst2BI CACGAG 2 cut(s) 70, 348
Bst2UI CCWGG 5 cut(s) 40, 115, 492, 554, 754
Bst4CI ACNGT 2 cut(s) 229, 363
BstACI GRCGYC 3 cut(s) 5, 215, 461
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 25, 287, 524
BstDEI CTNAG 1 cut(s) 483
BstEII GGTNACC 2 cut(s) 421, 501
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 3 cut(s) 94, 96, 299
BstH2I RGCGCY 2 cut(s) 218, 275
BstHHI GCGC 3 cut(s) 96, 217, 274
BstKTI GATC 2 cut(s) 78, 256
BstMAI GTCTC 4 cut(s) 77, 135, 351, 481
BstMBI GATC 2 cut(s) 75, 253
BstMWI GCNNNNNNNGC 4 cut(s) 402, 577, 580, 589
BstNI CCWGG 5 cut(s) 40, 115, 492, 554, 754
BstNSI RCATGY 1 cut(s) 526
BstPI GGTNACC 2 cut(s) 421, 501
BstSCI CCNGG 7 cut(s) 38, 113, 490, 505, 506, 552, 752
BstSLI GKGCMC 2 cut(s) 121, 594
BstUI CGCG 3 cut(s) 94, 96, 299
BstV1I GCAGC 7 cut(s) 261, 301, 506, 583, 586, 589, 592
BstX2I RGATCY 2 cut(s) 75, 253
BstYI RGATCY 2 cut(s) 75, 253
BsuRI GGCC 4 cut(s) 44, 119, 592, 642
BtsCI GGATG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 3 cut(s) 25, 287, 524
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 3 cut(s) 96, 217, 274
Cfr10I RCCGGY 2 cut(s) 425, 498
Cfr13I GGNCC 9 cut(s) 42, 51, 117, 118, 363, 388, 590, 591, 641
Cfr9I CCCGGG 1 cut(s) 506
CseI GACGC 2 cut(s) 450, 690
CsiI ACCWGGT 1 cut(s) 490
CviAII CATG 4 cut(s) 28, 178, 523, 763
DdeI CTNAG 1 cut(s) 483
DinI GGCGCC 1 cut(s) 216
DpnI GATC 2 cut(s) 77, 255
DpnII GATC 2 cut(s) 75, 253
EciI GGCGGA 2 cut(s) 392, 401
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 5 cut(s) 39, 121, 269, 594, 618
Eco31I GGTCTC 2 cut(s) 77, 481
Eco47I GGWCC 3 cut(s) 51, 363, 388
Eco47III AGCGCT 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 31, 491
Eco88I CYCGRG 3 cut(s) 391, 506, 730
Eco91I GGTNACC 2 cut(s) 421, 501
EcoO109I RGGNCCY 3 cut(s) 117, 118, 590
EcoO65I GGTNACC 2 cut(s) 421, 501
EcoRII CCWGG 5 cut(s) 38, 113, 490, 552, 752
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 5 cut(s) 39, 121, 269, 594, 618
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 4 cut(s) 31, 181, 526, 766
FaiI YATR 5 cut(s) 29, 173, 179, 524, 764
FaqI GGGAC 2 cut(s) 349, 437
FatI CATG 4 cut(s) 27, 177, 522, 762
Fnu4HI GCNGC 9 cut(s) 275, 290, 325, 354, 520, 572, 575, 578, 581
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 5 cut(s) 39, 121, 269, 594, 618
Fsp4HI GCNGC 9 cut(s) 275, 290, 325, 354, 520, 572, 575, 578, 581
FspBI CTAG 2 cut(s) 155, 746
GlaI GCGC 3 cut(s) 95, 216, 273
GluI GCNGC 9 cut(s) 275, 290, 325, 354, 520, 572, 575, 578, 581
GsaI CCCAGC 2 cut(s) 272, 615
GsuI CTGGAG 2 cut(s) 107, 575
HaeII RGCGCY 2 cut(s) 218, 275
HaeIII GGCC 4 cut(s) 44, 119, 592, 642
HapII CCGG 7 cut(s) 243, 305, 312, 426, 476, 499, 507
HgaI GACGC 2 cut(s) 450, 690
HhaI GCGC 3 cut(s) 96, 217, 274
Hin1I GRCGYC 3 cut(s) 5, 215, 461
Hin1II CATG 4 cut(s) 31, 181, 526, 766
Hin6I GCGC 3 cut(s) 94, 215, 272
HinP1I GCGC 3 cut(s) 94, 215, 272
HinfI GANTC 8 cut(s) 68, 149, 158, 301, 435, 466, 722, 749
HpaII CCGG 7 cut(s) 243, 305, 312, 426, 476, 499, 507
HphI GGTGA 3 cut(s) 103, 433, 683
Hpy188I TCNGA 6 cut(s) 13, 82, 169, 250, 471, 486
Hpy188III TCNNGA 5 cut(s) 49, 124, 257, 730, 746
Hpy99I CGWCG 4 cut(s) 10, 13, 466, 601
HpyAV CCTTC 4 cut(s) 55, 97, 736, 751
HpyCH4III ACNGT 2 cut(s) 229, 363
HpyCH4IV ACGT 3 cut(s) 18, 59, 678
HpyCH4V TGCA 2 cut(s) 415, 522
HpyF10VI GCNNNNNNNGC 4 cut(s) 402, 577, 580, 589
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 3 cut(s) 18, 59, 678
Hsp92I GRCGYC 3 cut(s) 5, 215, 461
Hsp92II CATG 4 cut(s) 31, 181, 526, 766
HspAI GCGC 3 cut(s) 94, 215, 272
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 2 cut(s) 75, 253
LmnI GCTCC 2 cut(s) 34, 556
Lsp1109I GCAGC 7 cut(s) 261, 301, 506, 583, 586, 589, 592
LweI GCATC 2 cut(s) 568, 692
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 2 cut(s) 155, 746
MaeII ACGT 3 cut(s) 18, 59, 678
MaeIII GTNAC 3 cut(s) 421, 440, 501
MalI GATC 2 cut(s) 77, 255
MboI GATC 2 cut(s) 75, 253
MboII GAAGA 1 cut(s) 153
MflI RGATCY 2 cut(s) 75, 253
MhlI GDGCHC 5 cut(s) 39, 121, 269, 594, 618
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 3 cut(s) 62, 716, 758
MmeI TCCRAC 2 cut(s) 162, 226
MnlI CCTC 6 cut(s) 119, 131, 175, 209, 244, 492
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 583
MspI CCGG 7 cut(s) 243, 305, 312, 426, 476, 499, 507
MspR9I CCNGG 7 cut(s) 40, 115, 492, 507, 508, 554, 754
MvaI CCWGG 5 cut(s) 40, 115, 492, 554, 754
MvnI CGCG 3 cut(s) 94, 96, 299
MwoI GCNNNNNNNGC 4 cut(s) 402, 577, 580, 589
NarI GGCGCC 1 cut(s) 215
NciI CCSGG 2 cut(s) 507, 508
NdeII GATC 2 cut(s) 75, 253
NlaIII CATG 4 cut(s) 31, 181, 526, 766
NlaIV GGNNCC 8 cut(s) 36, 119, 216, 255, 365, 390, 480, 592
NmuCI GTSAC 1 cut(s) 421
NspI RCATGY 1 cut(s) 526
NspV TTCGAA 1 cut(s) 335
PaeI GCATGC 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 730
PaqCI CACCTGC 1 cut(s) 680
PasI CCCWGGG 1 cut(s) 39
PcsI WCGNNNNNNNCGW 3 cut(s) 289, 346, 389
PfeI GAWTC 5 cut(s) 149, 158, 301, 435, 466
PfoI TCCNGGA 2 cut(s) 552, 752
PkrI GCNGC 9 cut(s) 276, 291, 326, 355, 521, 573, 576, 579, 582
PleI GAGTC 3 cut(s) 62, 716, 757
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 3 cut(s) 62, 716, 757
Psp6I CCWGG 5 cut(s) 38, 113, 490, 552, 752
PspEI GGTNACC 2 cut(s) 421, 501
PspFI CCCAGC 2 cut(s) 268, 611
PspGI CCWGG 5 cut(s) 38, 113, 490, 552, 752
PspN4I GGNNCC 8 cut(s) 36, 119, 216, 255, 365, 390, 480, 592
PspOMI GGGCCC 2 cut(s) 117, 590
PspPI GGNCC 9 cut(s) 42, 51, 117, 118, 363, 388, 590, 591, 641
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 2 cut(s) 75, 253
PvuII CAGCTG 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 9 cut(s) 275, 290, 325, 354, 520, 572, 575, 578, 581
Sau3AI GATC 2 cut(s) 75, 253
Sau96I GGNCC 9 cut(s) 42, 51, 117, 118, 363, 388, 590, 591, 641
SchI GAGTC 3 cut(s) 62, 716, 758
ScrFI CCNGG 7 cut(s) 40, 115, 492, 507, 508, 554, 754
SduI GDGCHC 5 cut(s) 39, 121, 269, 594, 618
SexAI ACCWGGT 1 cut(s) 490
SfaNI GCATC 2 cut(s) 568, 692
SfoI GGCGCC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 730
SfuI TTCGAA 1 cut(s) 335
SinI GGWCC 3 cut(s) 51, 363, 388
SlaI CTCGAG 1 cut(s) 730
SmaI CCCGGG 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
SphI GCATGC 1 cut(s) 526
SsiI CCGC 4 cut(s) 324, 353, 386, 403
SspDI GGCGCC 1 cut(s) 214
SspMI CTAG 2 cut(s) 155, 746
StyD4I CCNGG 7 cut(s) 38, 113, 490, 505, 506, 552, 752
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 229, 363
TaiI ACGT 3 cut(s) 21, 62, 681
TaqI TCGA 4 cut(s) 335, 464, 623, 731
TauI GCSGC 2 cut(s) 327, 356
TfiI GAWTC 5 cut(s) 149, 158, 301, 435, 466
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 7 cut(s) 274, 289, 519, 571, 574, 577, 580
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 166, 367
TspMI CCCGGG 1 cut(s) 506
VpaK11BI GGWCC 3 cut(s) 51, 363, 388
XbaI TCTAGA 1 cut(s) 745
XceI RCATGY 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 730
XmaI CCCGGG 1 cut(s) 506
XspI CTAG 2 cut(s) 155, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.