AT3G56880

protein of 25 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012167
Physical Location & Seq
Forward (+)
21059785 .. 21061247
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56880.1

Sequence Viewer

Length: 738 bp
ATGGCGTCGTCGGAGGGATTAGCAAGCGTTGATCCTTGGTCATTCCGTCAAAACTTCAACATCGATTCGTGGCTACTCTCTGATTCCTTCTCACACGACAGTGATATACTCGCTAAAGCTCTTCACAGATCCATCTCCACTTCCACCGAATCATCTCCTCTTTCTCCTTCATCTTTCTTCGACTCTTCAACCGCCGCCGTCGATTTTTCTCCTCCTCAAACTCTCTCCAACGTCTCTTTCGGCTCAGATCCAGAAATCCCCGCCGCTAGTGCTCTTGGTCTCGGGAAACGAAAACGTGGTCCTGGTGTTTCCGGTGGTAAACAAACGAAACGCCGATCTCGAGTTTCTAATAAGAAATCTCAAACCACGTTTATAACGGCGGACGCTGCTAATTTCCGGCAGATGGTTCAACAAGTCACCGGAGCTAAGTTCCTCGGTTCTTCCAACAGCATTTTCGCACCGATTGTGAAGCCGGAGCCACACCGTCTCGCTAGTAGATTACCACCGTCGTGCGGAAACTTGGACCGATCTTCAGCTGTTCCAACGCTAGATACGTCGTCGTTTTTGTCTAACCATCACCAAGAGAACATTATCACAGATTTGGGAGCTCCGACCGGTTCGTTTCATCATCAATCCAGTGCAGGTACAACGACGGCGAACGTTGGTGGTGGTAGCTCCGCCGTGGAATTGGATAGTTACCCGAGCTTCCCAACACTCGAATCATGGAAAGTTATGTGA

Protein Analysis

245

Amino Acids

25.96

Weight (kDa)

7.95

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 120 - 142 1.6e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 632
AciI CCGC 7 cut(s) 192, 195, 261, 264, 380, 513, 678
AclI AACGTT 1 cut(s) 660
AclWI GGATC 3 cut(s) 26, 123, 242
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 2 cut(s) 403, 512
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 3 cut(s) 58, 189, 410
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 4 cut(s) 221, 253, 437, 469
AleI CACNNNNGTG 2 cut(s) 99, 508
AluBI AGCT 6 cut(s) 119, 425, 536, 608, 675, 705
AluI AGCT 6 cut(s) 119, 425, 536, 608, 675, 705
Alw21I GWGCWC 2 cut(s) 274, 610
Alw26I GTCTC 3 cut(s) 238, 284, 491
AlwI GGATC 3 cut(s) 26, 123, 242
Ama87I CYCGRG 3 cut(s) 281, 339, 700
ApeKI GCWGC 1 cut(s) 386
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AsiGI ACCGGT 1 cut(s) 614
AspS9I GGNCC 2 cut(s) 299, 523
AsuHPI GGTGA 2 cut(s) 409, 569
AvaI CYCGRG 3 cut(s) 281, 339, 700
AvaII GGWCC 2 cut(s) 299, 523
BanII GRGCYC 1 cut(s) 610
Bbv12I GWGCWC 2 cut(s) 274, 610
BbvI GCAGC 1 cut(s) 373
BccI CCATC 3 cut(s) 140, 397, 582
BceAI ACGGC 4 cut(s) 182, 393, 665, 669
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 238, 284, 491
BfaI CTAG 3 cut(s) 267, 492, 548
BfuAI ACCTGC 1 cut(s) 632
BisI GCNGC 3 cut(s) 195, 264, 387
BlsI GCNGC 3 cut(s) 196, 265, 388
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 2 cut(s) 299, 523
BmeT110I CYCGRG 3 cut(s) 281, 339, 700
BmgT120I GGNCC 2 cut(s) 299, 523
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 35, 433, 681
BsaWI WCCGGW 3 cut(s) 311, 419, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 512
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 35, 433, 681
BseLI CCNNNNNNNGG 2 cut(s) 403, 512
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 3 cut(s) 147, 201, 204
BseXI GCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 660
Bsh1285I CGRYCG 1 cut(s) 615
BshTI ACCGGT 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 615
BsiHKAI GWGCWC 2 cut(s) 274, 610
BsiHKCI CYCGRG 3 cut(s) 281, 339, 700
BsiSI CCGG 5 cut(s) 312, 397, 420, 473, 615
BslI CCNNNNNNNGG 2 cut(s) 403, 512
BsmAI GTCTC 3 cut(s) 238, 284, 491
BsmBI CGTCTC 2 cut(s) 238, 491
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 3 cut(s) 281, 339, 700
Bsp1286I GDGCHC 2 cut(s) 274, 610
Bsp143I GATC 5 cut(s) 31, 128, 247, 335, 527
BspACI CCGC 7 cut(s) 192, 195, 261, 264, 380, 513, 678
BspCNI CTCAG 1 cut(s) 257
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 3 cut(s) 26, 123, 242
BspQI GCTCTTC 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 3 cut(s) 35, 433, 681
BssMI GATC 5 cut(s) 31, 128, 247, 335, 527
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 101, 485, 507
Bst6I CTCTTC 2 cut(s) 126, 190
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 244, 426
BstDSI CCRYGG 1 cut(s) 681
BstKTI GATC 5 cut(s) 34, 131, 250, 338, 530
BstMAI GTCTC 3 cut(s) 238, 284, 491
BstMBI GATC 5 cut(s) 31, 128, 247, 335, 527
BstMCI CGRYCG 1 cut(s) 615
BstMWI GCNNNNNNNGC 2 cut(s) 269, 386
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 373
BstX2I RGATCY 2 cut(s) 128, 247
BstYI RGATCY 2 cut(s) 128, 247
Bsu15I ATCGAT 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 681
BtsIMutI CAGTG 2 cut(s) 106, 643
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 299, 523
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 645
CspAI ACCGGT 1 cut(s) 614
CviAII CATG 1 cut(s) 723
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 2 cut(s) 244, 426
DpnI GATC 5 cut(s) 33, 130, 249, 337, 529
DpnII GATC 5 cut(s) 31, 128, 247, 335, 527
Eam1104I CTCTTC 2 cut(s) 126, 190
EarI CTCTTC 2 cut(s) 126, 190
EciI GGCGGA 2 cut(s) 395, 667
Ecl136II GAGCTC 1 cut(s) 608
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 299, 523
Eco53kI GAGCTC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 3 cut(s) 281, 339, 700
EcoICRI GAGCTC 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 35
Esp3I CGTCTC 2 cut(s) 238, 491
FaeI CATG 1 cut(s) 726
FaiI YATR 4 cut(s) 107, 374, 724, 734
FatI CATG 1 cut(s) 722
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 195, 264, 387
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 3 cut(s) 195, 264, 387
FspBI CTAG 3 cut(s) 267, 492, 548
GluI GCNGC 3 cut(s) 195, 264, 387
HapII CCGG 5 cut(s) 312, 397, 420, 473, 615
HgaI GACGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 726
HinfI GANTC 5 cut(s) 65, 83, 149, 182, 719
HpaII CCGG 5 cut(s) 312, 397, 420, 473, 615
HphI GGTGA 2 cut(s) 409, 569
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 4 cut(s) 13, 82, 247, 612
Hpy188III TCNNGA 3 cut(s) 251, 283, 339
Hpy8I GTNNAC 1 cut(s) 320
Hpy99I CGWCG 7 cut(s) 10, 13, 203, 511, 559, 562, 655
HpyAV CCTTC 2 cut(s) 97, 177
HpyCH4III ACNGT 3 cut(s) 101, 485, 507
HpyCH4IV ACGT 5 cut(s) 231, 295, 368, 554, 660
HpyCH4V TGCA 1 cut(s) 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 386
HpyF3I CTNAG 2 cut(s) 244, 426
HpySE526I ACGT 5 cut(s) 231, 295, 368, 554, 660
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 726
Kzo9I GATC 5 cut(s) 31, 128, 247, 335, 527
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 5 cut(s) 422, 475, 605, 613, 680
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 3 cut(s) 267, 492, 548
MaeII ACGT 5 cut(s) 231, 295, 368, 554, 660
MaeIII GTNAC 2 cut(s) 415, 695
MalI GATC 5 cut(s) 33, 130, 249, 337, 529
MboI GATC 5 cut(s) 31, 128, 247, 335, 527
MboII GAAGA 5 cut(s) 113, 169, 177, 432, 522
MflI RGATCY 2 cut(s) 128, 247
MhlI GDGCHC 2 cut(s) 274, 610
MluCI AATT 2 cut(s) 391, 686
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 4 cut(s) 252, 468, 566, 635
MnlI CCTC 5 cut(s) 7, 168, 222, 225, 443
MslI CAYNNNNRTG 2 cut(s) 99, 508
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 5 cut(s) 312, 397, 420, 473, 615
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 269, 386
NdeII GATC 5 cut(s) 31, 128, 247, 335, 527
NlaIII CATG 1 cut(s) 726
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 415
OliI CACNNNNGTG 2 cut(s) 99, 508
PaeR7I CTCGAG 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 2 cut(s) 337, 551
PfeI GAWTC 4 cut(s) 65, 83, 149, 719
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 3 cut(s) 196, 265, 388
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PsiI TTATAA 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 610
Psp1406I AACGTT 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 2 cut(s) 299, 523
PsuI RGATCY 2 cut(s) 128, 247
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 2 cut(s) 99, 508
SacI GAGCTC 1 cut(s) 610
SapI GCTCTTC 1 cut(s) 126
SatI GCNGC 3 cut(s) 195, 264, 387
Sau3AI GATC 5 cut(s) 31, 128, 247, 335, 527
Sau96I GGNCC 2 cut(s) 299, 523
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 2 cut(s) 274, 610
Sfr274I CTCGAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 299, 523
SlaI CTCGAG 1 cut(s) 339
SmiMI CAYNNNNRTG 2 cut(s) 99, 508
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 2 cut(s) 391, 686
SsiI CCGC 7 cut(s) 192, 195, 261, 264, 380, 513, 678
SspMI CTAG 3 cut(s) 267, 492, 548
SstI GAGCTC 1 cut(s) 610
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 3 cut(s) 101, 485, 507
TaiI ACGT 5 cut(s) 234, 298, 371, 557, 663
TaqI TCGA 5 cut(s) 63, 180, 201, 340, 717
TaqII GACCGA 1 cut(s) 540
TasI AATT 2 cut(s) 391, 686
TauI GCSGC 2 cut(s) 197, 266
TfiI GAWTC 4 cut(s) 65, 83, 149, 719
TscAI CASTG 2 cut(s) 106, 643
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 159, 614
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 106, 643
VpaK11BI GGWCC 2 cut(s) 299, 523
XhoI CTCGAG 1 cut(s) 339
XspI CTAG 3 cut(s) 267, 492, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.