RLG00000025218

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012167
Physical Location & Seq
Reverse (-)
43054819 .. 43055580
762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025218

Sequence Viewer

Length: 762 bp
ATGGCGGCGTCGGATAACCTAGCAGCGATGGAGCCGTGGGCGTACAGGCCGACGACGACGTTTGCGGACTCGTGGATCTCGGAGGCGTTTGCGAGGGACACTAAGGCGCTGACGATGGCGCTGCAGAAGTCGCTGGCCAACAACAGGAGCTCGGAATCTGCGGATTCCGAGTTCTTGCCGTTTTTCGATACGTTTCAGGCGGAAACGACGGCTACGCCGACTGTTTCCGGGGTTTCGGGGTCGGATCCGGAGTCCGTTGCGGCGCCGAAGCGGCAGAGGAACGCGGTTCCCCTTTCGGGGGGCAAGGTGACGAAACGGAAGTCGCGCGCGTCGAAGCGGACGCAGACGACGTTCATCACGGCTGACCCGGCGAACTTCCGGCAGATGGTGCAGCAGGTGACGGGGGTGAGGTTTAACGGACAGCAGTTCTCTTCGCTGCCGACGGTTGTCAAGCCCGAGCCGCAGAGACCCGGCGGCAATCGCGTACCGGGCGGCGGGTGCTTGCCGACGCTCGACACGTCGGCGTTGCTGTTCGACCACCATCAACAGCAACAACAGCAGCAGCAGCAGCAGCAGAGGCAGCAGTACCAGCAGCAGGTTGTGGGGCCCGCATCGGCAACGGGAGGAGGTGGACAGATGGGACCAATGCGCTATGGGGCGACGGTGGAGGTGGCTGAGGGTGGTGGTGGCGTCTCTGGCGGGGGATTAGGCTTTGACTCTTATTCGAGCTTTCCCACTTTGGAGTCGTGGAAGGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

254

Amino Acids

27.09

Weight (kDa)

9.09

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 114 - 135 2.8e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 2 cut(s) 385, 586
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 5 cut(s) 284, 325, 327, 329, 483
AccIII TCCGGA 1 cut(s) 247
AclWI GGATC 3 cut(s) 83, 239, 252
AcoI YGGCCR 1 cut(s) 135
AcyI GRCGYC 3 cut(s) 8, 263, 690
AfaI GTAC 3 cut(s) 44, 486, 587
AfiI CCNNNNNNNGG 7 cut(s) 144, 296, 297, 298, 385, 494, 595
AflIII ACRYGT 1 cut(s) 516
AjiI CACGTC 1 cut(s) 519
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 150, 729
AluI AGCT 2 cut(s) 150, 729
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 460, 697
AlwI GGATC 3 cut(s) 83, 239, 252
Ama87I CYCGRG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 3 cut(s) 47, 135, 605
ApaI GGGCCC 1 cut(s) 609
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 6 cut(s) 109, 121, 265, 327, 329, 651
AspS9I GGNCC 3 cut(s) 605, 606, 641
AsuC2I CCSGG 4 cut(s) 229, 368, 471, 489
AsuHPI GGTGA 3 cut(s) 319, 409, 418
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 641
BaeGI GKGCMC 1 cut(s) 609
BalI TGGCCA 1 cut(s) 137
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 152, 609
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 675
BccI CCATC 5 cut(s) 22, 109, 379, 549, 631
BceAI ACGGC 4 cut(s) 19, 163, 225, 375
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 4 cut(s) 229, 368, 471, 489
BcoDI GTCTC 2 cut(s) 460, 697
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 3 cut(s) 110, 122, 266
BfuAI ACCTGC 2 cut(s) 385, 586
BglI GCCNNNNNGGC 1 cut(s) 271
Bme1390I CCNGG 4 cut(s) 229, 368, 471, 489
Bme18I GGWCC 1 cut(s) 641
BmeT110I CYCGRG 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 605, 606, 641
BmiI GGNNCC 7 cut(s) 33, 246, 264, 288, 606, 607, 642
BmrFI CCNGG 4 cut(s) 229, 368, 471, 489
BmsI GCATC 1 cut(s) 620
BoxI GACNNNNGTC 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 675
BpuMI CCSGG 4 cut(s) 229, 368, 471, 489
BsaHI GRCGYC 3 cut(s) 8, 263, 690
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 35, 228
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 7 cut(s) 144, 296, 297, 298, 385, 494, 595
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 35, 228
BseLI CCNNNNNNNGG 7 cut(s) 144, 296, 297, 298, 385, 494, 595
BseMII CTCAG 1 cut(s) 666
BsePI GCGCGC 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 639
BseSI GKGCMC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 5 cut(s) 284, 325, 327, 329, 483
BshFI GGCC 3 cut(s) 49, 137, 607
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
BslFI GGGAC 2 cut(s) 110, 654
BslI CCNNNNNNNGG 7 cut(s) 144, 296, 297, 298, 385, 494, 595
BsmAI GTCTC 2 cut(s) 460, 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 2 cut(s) 110, 654
BsnI GGCC 3 cut(s) 49, 137, 607
Bso31I GGTCTC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 455
Bsp120I GGGCCC 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 152, 609
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 75, 244
BspANI GGCC 3 cut(s) 49, 137, 607
BspCNI CTCAG 1 cut(s) 667
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 5 cut(s) 284, 325, 327, 329, 483
BspLI GGNNCC 7 cut(s) 33, 246, 264, 288, 606, 607, 642
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 2 cut(s) 385, 586
BspPI GGATC 3 cut(s) 83, 239, 252
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 35, 228
BssHII GCGCGC 1 cut(s) 325
BssMI GATC 2 cut(s) 75, 244
BssNI GRCGYC 3 cut(s) 8, 263, 690
BssSI CACGAG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 70
Bst4CI ACNGT 3 cut(s) 223, 445, 664
Bst6I CTCTTC 1 cut(s) 436
BstACI GRCGYC 3 cut(s) 8, 263, 690
BstAPI GCANNNNNTGC 1 cut(s) 388
BstC8I GCNNGC 4 cut(s) 135, 327, 503, 609
BstDEI CTNAG 2 cut(s) 102, 675
BstDSI CCRYGG 1 cut(s) 35
BstFNI CGCG 5 cut(s) 284, 325, 327, 329, 483
BstH2I RGCGCY 3 cut(s) 110, 122, 266
BstHHI GCGC 6 cut(s) 109, 121, 265, 327, 329, 651
BstKTI GATC 2 cut(s) 78, 247
BstMAI GTCTC 2 cut(s) 460, 697
BstMBI GATC 2 cut(s) 75, 244
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 227, 366, 469, 487
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 5 cut(s) 284, 325, 327, 329, 483
BstX2I RGATCY 2 cut(s) 75, 244
BstYI RGATCY 2 cut(s) 75, 244
BsuRI GGCC 3 cut(s) 49, 137, 607
BtgI CCRYGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 519
BveI ACCTGC 2 cut(s) 385, 586
Cac8I GCNNGC 4 cut(s) 135, 327, 503, 609
CfoI GCGC 6 cut(s) 109, 121, 265, 327, 329, 651
Cfr13I GGNCC 3 cut(s) 605, 606, 641
CseI GACGC 4 cut(s) 318, 349, 517, 679
Csp6I GTAC 3 cut(s) 43, 485, 586
CviAII CATG 1 cut(s) 757
CviQI GTAC 3 cut(s) 43, 485, 586
DdeI CTNAG 2 cut(s) 102, 675
DinI GGCGCC 1 cut(s) 264
DpnI GATC 2 cut(s) 77, 246
DpnII GATC 2 cut(s) 75, 244
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 152, 609
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 641
Eco53kI GAGCTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 605
EcoT38I GRGCYC 2 cut(s) 152, 609
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 697
FaeI CATG 1 cut(s) 760
FaiI YATR 2 cut(s) 654, 758
FaqI GGGAC 2 cut(s) 110, 654
FatI CATG 1 cut(s) 756
FauI CCCGC 3 cut(s) 488, 616, 692
FriOI GRGCYC 2 cut(s) 152, 609
FspBI CTAG 1 cut(s) 20
GlaI GCGC 6 cut(s) 108, 120, 264, 326, 328, 650
HaeII RGCGCY 3 cut(s) 110, 122, 266
HaeIII GGCC 3 cut(s) 49, 137, 607
HapII CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
HgaI GACGC 4 cut(s) 318, 349, 517, 679
HhaI GCGC 6 cut(s) 109, 121, 265, 327, 329, 651
Hin1I GRCGYC 3 cut(s) 8, 263, 690
Hin1II CATG 1 cut(s) 760
Hin6I GCGC 6 cut(s) 107, 119, 263, 325, 327, 649
HinP1I GCGC 6 cut(s) 107, 119, 263, 325, 327, 649
HinfI GANTC 6 cut(s) 68, 155, 164, 251, 716, 743
HpaII CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
HphI GGTGA 3 cut(s) 319, 409, 418
Hpy166II GTNNAC 1 cut(s) 632
Hpy188I TCNGA 5 cut(s) 13, 82, 154, 169, 244
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 632
HpyAV CCTTC 1 cut(s) 745
HpyCH4III ACNGT 3 cut(s) 223, 445, 664
HpyCH4IV ACGT 4 cut(s) 59, 191, 350, 518
HpyCH4V TGCA 2 cut(s) 124, 391
HpyF3I CTNAG 2 cut(s) 102, 675
HpySE526I ACGT 4 cut(s) 59, 191, 350, 518
Hsp92I GRCGYC 3 cut(s) 8, 263, 690
Hsp92II CATG 1 cut(s) 760
HspAI GCGC 6 cut(s) 107, 119, 263, 325, 327, 649
KasI GGCGCC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 75, 244
LmnI GCTCC 2 cut(s) 31, 147
LweI GCATC 1 cut(s) 620
MaeI CTAG 1 cut(s) 20
MaeII ACGT 4 cut(s) 59, 191, 350, 518
MaeIII GTNAC 2 cut(s) 307, 397
MalI GATC 2 cut(s) 77, 246
MauBI CGCGCGCG 1 cut(s) 325
MboI GATC 2 cut(s) 75, 244
MboII GAAGA 1 cut(s) 423
MflI RGATCY 2 cut(s) 75, 244
MhlI GDGCHC 2 cut(s) 152, 609
MlsI TGGCCA 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 137
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 4 cut(s) 62, 260, 710, 752
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 76, 87, 270, 402, 570, 617, 620, 661, 670
Mox20I TGGCCA 1 cut(s) 137
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 137
MseI TTAA 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
MspR9I CCNGG 4 cut(s) 229, 368, 471, 489
MvnI CGCG 5 cut(s) 284, 325, 327, 329, 483
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 4 cut(s) 229, 368, 471, 489
NdeII GATC 2 cut(s) 75, 244
NlaIII CATG 1 cut(s) 760
NlaIV GGNNCC 7 cut(s) 33, 246, 264, 288, 606, 607, 642
NmuCI GTSAC 2 cut(s) 307, 397
PaqCI CACCTGC 1 cut(s) 385
PauI GCGCGC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 4 cut(s) 215, 329, 347, 515
PfeI GAWTC 2 cut(s) 155, 164
PleI GAGTC 4 cut(s) 62, 259, 710, 751
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 4 cut(s) 62, 259, 710, 751
PshAI GACNNNNGTC 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 7 cut(s) 33, 246, 264, 288, 606, 607, 642
PspOMI GGGCCC 1 cut(s) 605
PspPI GGNCC 3 cut(s) 605, 606, 641
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 75, 244
PteI GCGCGC 1 cut(s) 325
RsaI GTAC 3 cut(s) 44, 486, 587
RsaNI GTAC 3 cut(s) 43, 485, 586
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 2 cut(s) 75, 244
Sau96I GGNCC 3 cut(s) 605, 606, 641
SchI GAGTC 4 cut(s) 62, 260, 710, 752
ScrFI CCNGG 4 cut(s) 229, 368, 471, 489
SduI GDGCHC 2 cut(s) 152, 609
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 1 cut(s) 641
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 4 cut(s) 227, 366, 469, 487
TaaI ACNGT 3 cut(s) 223, 445, 664
TaiI ACGT 4 cut(s) 62, 194, 353, 521
TaqI TCGA 5 cut(s) 186, 332, 513, 534, 725
TauI GCSGC 6 cut(s) 8, 263, 274, 463, 477, 495
TfiI GAWTC 2 cut(s) 155, 164
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseFI GTSAC 2 cut(s) 307, 397
Tsp45I GTSAC 2 cut(s) 307, 397
TspDTI ATGAA 1 cut(s) 343
TspGWI ACGGA 3 cut(s) 244, 331, 432
VpaK11BI GGWCC 1 cut(s) 641
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.