RchiOBHm_Chr3g0457501

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012167
Physical Location & Seq
Forward (+)
6579309 .. 6580370
1062 bp
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UTR
Exon/CDS
Intron
PRQ42425

Sequence Viewer

Length: 696 bp
ATGGCGGCGTCGGATAACCTAGCAGCGATGGAGCCGTGGGCGTACAGGCCGACGACGACGTTTGCGGACTCGTGGATCTCGGAGGCGTTTGCGAGGGACACGAAGGCGCTGACGATGGCGCTGCAGAAGTCGCTGGCGGACAACAGGAGCTCGGAATCTCCGGATTCCGAGTTCTTGCCGTTTTTTGATACGTTTCAGGCGGAAACGACGGCTACGCCGACTGTTTCCGGGGTTTCGGGGTCGGATCCGGAGTCGGTTGCGGCGCCCAAGCTGCGGCAGAGGAACGCGGTTCCCGTTTCGGGGGGCAAGGTGACGAAACGGAAGTCGCGCGCGTCGAAGCGGACGCAGACGACTTTCATCACGGCGGACCCGGCGAACTTCCGGCAGATGGTGCAGCAGGTGACGGGGGTGAGGTTTAACGGACAGCAGTTCTCTTCGCTGCCGACGGTTGTCAAGCCCGAGCCGCAGAGACCCGGCGGCAATCGCTTACCGGGCGGCGGGTGCTTGCCGACGCTCGACACGTCGGCGTTGTTGTTCGACCACCATCAACAGCAGCAGCAGCAGAGGCAGCAGTACCAGCAGCAGGTTGTGGGGCCCGCATCGGCAACGGGAGGAGGTGGACAGATGCGACCAATGCGCTATGGGGCGACGGTGGAGGTGGCTGAGGGTGGTGGTGGCGTCTCTGGCGGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

231

Amino Acids

24.67

Weight (kDa)

9.16

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 115 - 136 2.5e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 2 cut(s) 388, 574
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 4 cut(s) 287, 328, 330, 332
AccIII TCCGGA 2 cut(s) 160, 247
AclWI GGATC 3 cut(s) 83, 239, 252
AcyI GRCGYC 3 cut(s) 8, 263, 678
AfaI GTAC 2 cut(s) 44, 575
AfiI CCNNNNNNNGG 6 cut(s) 273, 299, 300, 388, 497, 583
AflIII ACRYGT 1 cut(s) 519
AjiI CACGTC 1 cut(s) 522
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 150, 271
AluI AGCT 2 cut(s) 150, 271
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 463, 685
AlwI GGATC 3 cut(s) 83, 239, 252
Ama87I CYCGRG 1 cut(s) 458
Aor13HI TCCGGA 2 cut(s) 160, 247
AoxI GGCC 2 cut(s) 47, 593
ApaI GGGCCC 1 cut(s) 597
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 6 cut(s) 109, 121, 265, 330, 332, 639
AspS9I GGNCC 3 cut(s) 367, 593, 594
AsuC2I CCSGG 4 cut(s) 229, 371, 474, 492
AsuHPI GGTGA 3 cut(s) 322, 412, 421
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 597
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 152, 597
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 663
BccI CCATC 4 cut(s) 22, 109, 382, 552
BceAI ACGGC 4 cut(s) 19, 163, 225, 378
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 4 cut(s) 229, 371, 474, 492
BcoDI GTCTC 2 cut(s) 463, 685
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 3 cut(s) 110, 122, 266
BfuAI ACCTGC 2 cut(s) 388, 574
Bme1390I CCNGG 4 cut(s) 229, 371, 474, 492
Bme18I GGWCC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 3 cut(s) 367, 593, 594
BmiI GGNNCC 7 cut(s) 33, 246, 264, 291, 369, 594, 595
BmrFI CCNGG 4 cut(s) 229, 371, 474, 492
BmsI GCATC 2 cut(s) 608, 615
BoxI GACNNNNGTC 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 663
BpuMI CCSGG 4 cut(s) 229, 371, 474, 492
BsaHI GRCGYC 3 cut(s) 8, 263, 678
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 35, 228
BsaWI WCCGGW 2 cut(s) 160, 247
Bsc4I CCNNNNNNNGG 6 cut(s) 273, 299, 300, 388, 497, 583
BseAI TCCGGA 2 cut(s) 160, 247
BseDI CCNNGG 2 cut(s) 35, 228
BseLI CCNNNNNNNGG 6 cut(s) 273, 299, 300, 388, 497, 583
BseMII CTCAG 1 cut(s) 654
BsePI GCGCGC 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 627
BseSI GKGCMC 1 cut(s) 597
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 4 cut(s) 287, 328, 330, 332
BshFI GGCC 2 cut(s) 49, 595
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 7 cut(s) 161, 228, 248, 371, 382, 474, 491
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 6 cut(s) 273, 299, 300, 388, 497, 583
BsmAI GTCTC 2 cut(s) 463, 685
BsmBI CGTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 2 cut(s) 49, 595
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 458
Bsp120I GGGCCC 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 152, 597
Bsp13I TCCGGA 2 cut(s) 160, 247
Bsp143I GATC 2 cut(s) 75, 244
BspANI GGCC 2 cut(s) 49, 595
BspCNI CTCAG 1 cut(s) 655
BspEI TCCGGA 2 cut(s) 160, 247
BspFNI CGCG 4 cut(s) 287, 328, 330, 332
BspLI GGNNCC 7 cut(s) 33, 246, 264, 291, 369, 594, 595
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 2 cut(s) 388, 574
BspPI GGATC 3 cut(s) 83, 239, 252
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 35, 228
BssHII GCGCGC 1 cut(s) 328
BssMI GATC 2 cut(s) 75, 244
BssNI GRCGYC 3 cut(s) 8, 263, 678
BssSI CACGAG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 70
Bst4CI ACNGT 3 cut(s) 223, 448, 652
Bst6I CTCTTC 1 cut(s) 439
BstACI GRCGYC 3 cut(s) 8, 263, 678
BstAPI GCANNNNNTGC 1 cut(s) 391
BstC8I GCNNGC 4 cut(s) 135, 330, 506, 597
BstDEI CTNAG 1 cut(s) 663
BstDSI CCRYGG 1 cut(s) 35
BstFNI CGCG 4 cut(s) 287, 328, 330, 332
BstH2I RGCGCY 3 cut(s) 110, 122, 266
BstHHI GCGC 6 cut(s) 109, 121, 265, 330, 332, 639
BstKTI GATC 2 cut(s) 78, 247
BstMAI GTCTC 2 cut(s) 463, 685
BstMBI GATC 2 cut(s) 75, 244
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 227, 369, 472, 490
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 597
BstUI CGCG 4 cut(s) 287, 328, 330, 332
BstX2I RGATCY 2 cut(s) 75, 244
BstYI RGATCY 2 cut(s) 75, 244
BsuRI GGCC 2 cut(s) 49, 595
BtgI CCRYGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 522
BveI ACCTGC 2 cut(s) 388, 574
Cac8I GCNNGC 4 cut(s) 135, 330, 506, 597
CfoI GCGC 6 cut(s) 109, 121, 265, 330, 332, 639
Cfr13I GGNCC 3 cut(s) 367, 593, 594
CseI GACGC 4 cut(s) 321, 352, 520, 667
Csp6I GTAC 2 cut(s) 43, 574
CviJI RGCY 9 cut(s) 34, 49, 150, 212, 271, 457, 463, 595, 662
CviKI_1 RGCY 9 cut(s) 34, 49, 150, 212, 271, 457, 463, 595, 662
CviQI GTAC 2 cut(s) 43, 574
DdeI CTNAG 1 cut(s) 663
DinI GGCGCC 1 cut(s) 264
DpnI GATC 2 cut(s) 77, 246
DpnII GATC 2 cut(s) 75, 244
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
EciI GGCGGA 3 cut(s) 152, 215, 380
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 152, 597
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 593
EcoT38I GRGCYC 2 cut(s) 152, 597
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 685
FaiI YATR 1 cut(s) 642
FaqI GGGAC 1 cut(s) 110
FauI CCCGC 3 cut(s) 491, 604, 680
FriOI GRGCYC 2 cut(s) 152, 597
FspBI CTAG 1 cut(s) 20
GlaI GCGC 6 cut(s) 108, 120, 264, 329, 331, 638
HaeII RGCGCY 3 cut(s) 110, 122, 266
HaeIII GGCC 2 cut(s) 49, 595
HapII CCGG 7 cut(s) 161, 228, 248, 371, 382, 474, 491
HgaI GACGC 4 cut(s) 321, 352, 520, 667
HhaI GCGC 6 cut(s) 109, 121, 265, 330, 332, 639
Hin1I GRCGYC 3 cut(s) 8, 263, 678
Hin6I GCGC 6 cut(s) 107, 119, 263, 328, 330, 637
HinP1I GCGC 6 cut(s) 107, 119, 263, 328, 330, 637
HinfI GANTC 4 cut(s) 68, 155, 164, 251
HpaII CCGG 7 cut(s) 161, 228, 248, 371, 382, 474, 491
HphI GGTGA 3 cut(s) 322, 412, 421
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 5 cut(s) 13, 82, 154, 169, 244
Hpy188III TCNNGA 2 cut(s) 161, 248
Hpy8I GTNNAC 1 cut(s) 620
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 3 cut(s) 223, 448, 652
HpyCH4IV ACGT 3 cut(s) 59, 191, 521
HpyCH4V TGCA 2 cut(s) 124, 394
HpyF3I CTNAG 1 cut(s) 663
HpySE526I ACGT 3 cut(s) 59, 191, 521
Hsp92I GRCGYC 3 cut(s) 8, 263, 678
HspAI GCGC 6 cut(s) 107, 119, 263, 328, 330, 637
KasI GGCGCC 1 cut(s) 262
Kpn2I TCCGGA 2 cut(s) 160, 247
Kzo9I GATC 2 cut(s) 75, 244
LmnI GCTCC 2 cut(s) 31, 147
LweI GCATC 2 cut(s) 608, 615
MaeI CTAG 1 cut(s) 20
MaeII ACGT 3 cut(s) 59, 191, 521
MaeIII GTNAC 2 cut(s) 310, 400
MalI GATC 2 cut(s) 77, 246
MauBI CGCGCGCG 1 cut(s) 328
MboI GATC 2 cut(s) 75, 244
MboII GAAGA 1 cut(s) 426
MflI RGATCY 2 cut(s) 75, 244
MhlI GDGCHC 2 cut(s) 152, 597
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 2 cut(s) 62, 260
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 76, 87, 273, 405, 558, 605, 608, 649, 658
MroI TCCGGA 2 cut(s) 160, 247
MseI TTAA 1 cut(s) 417
MspI CCGG 7 cut(s) 161, 228, 248, 371, 382, 474, 491
MspR9I CCNGG 4 cut(s) 229, 371, 474, 492
MvnI CGCG 4 cut(s) 287, 328, 330, 332
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 4 cut(s) 229, 371, 474, 492
NdeII GATC 2 cut(s) 75, 244
NlaIV GGNNCC 7 cut(s) 33, 246, 264, 291, 369, 594, 595
NmuCI GTSAC 2 cut(s) 310, 400
PaqCI CACCTGC 1 cut(s) 388
PauI GCGCGC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 4 cut(s) 215, 291, 332, 518
PfeI GAWTC 2 cut(s) 155, 164
PleI GAGTC 2 cut(s) 62, 259
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 2 cut(s) 62, 259
PshAI GACNNNNGTC 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 7 cut(s) 33, 246, 264, 291, 369, 594, 595
PspOMI GGGCCC 1 cut(s) 593
PspPI GGNCC 3 cut(s) 367, 593, 594
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 75, 244
PteI GCGCGC 1 cut(s) 328
RsaI GTAC 2 cut(s) 44, 575
RsaNI GTAC 2 cut(s) 43, 574
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 2 cut(s) 75, 244
Sau96I GGNCC 3 cut(s) 367, 593, 594
SchI GAGTC 2 cut(s) 62, 260
ScrFI CCNGG 4 cut(s) 229, 371, 474, 492
SduI GDGCHC 2 cut(s) 152, 597
SfaNI GCATC 2 cut(s) 608, 615
SfcI CTRYAG 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 1 cut(s) 367
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 4 cut(s) 227, 369, 472, 490
TaaI ACNGT 3 cut(s) 223, 448, 652
TaiI ACGT 3 cut(s) 62, 194, 524
TaqI TCGA 3 cut(s) 335, 516, 537
TauI GCSGC 6 cut(s) 8, 263, 277, 466, 480, 498
TfiI GAWTC 2 cut(s) 155, 164
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 2 cut(s) 310, 400
Tsp45I GTSAC 2 cut(s) 310, 400
TspDTI ATGAA 1 cut(s) 346
TspGWI ACGGA 2 cut(s) 334, 435
VpaK11BI GGWCC 1 cut(s) 367
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.