AT2G41170

F-box protein At2g41170-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009280
Physical Location & Seq
Reverse (-)
17159074 .. 17161294
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41170.1

Sequence Viewer

Length: 1116 bp
ATGGAGAAACAGTACCTCACTTTCATTTCTTTTTGTTTCTCCATCACCATTTGTGGGTTCCTCATAGTTTCTTGGCTGGCAAGAAGCATAATCCGTAATGGGATTAGAACATTAACATGGAGAAAGGAAACGAAGAGGAAGAAAAAGAATCAAGAAGATGAAAACAAAATGTCTCTCCTGGATTTGCCGGACTTAACCTTAGACTGCATATTAGAGAAGCTCTCACCATCAGAGCTCTGTGCAATGACTAGTGTTTGCTCCGAGCTAAGAGATAAGTGTGTAAGCGATCATCTATGGGAGAAGCATATGGAGACAAAATGGGGAAGATTGATGGGTGATGCAGCGATTCAAGAGTGGAAATCTCACGTTGCTACGATAATGAGATGTCTCACAAGTAGTAGTAGTAGTAGTAGAAAGAGTAAACCAAACTGGAGTTCGAGGTTTGTTGCGAATTTGAAACCCTTTGCATGGTTAAGTTCAAACCATGGTTGTGAAAACAGAGGATCATCATCATATTTGGCACCTATAGATTCTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCTACAATCGCGAGAACGGACATGTTGGATTCATGATGTCTTGTTACGATGCTAAGATCAGATACGATTTCAAGACTGATACATTTCAAGCTAGATACTCGGCACATGGCCGGCGAGCGGCGGAGGAAAAGGTGACGTGGCAGAGGCTGAGACCGTCTCAAGACGACACAAAGTCACGTGATCTGCACGTGTCAGATTGTTTGCACGGACTTCGACCTGGTGACCATTTCGAGATCCAATGGCGACGAACCAAAGAGTTCCCTTATGGTTGGTGGTTCGGAATCGTTGGTCATCTACAAAACTGCGACGGCGTACAAAATTGTCGTTGCGACTCTGACGAGAATGTGGTGATGGAGTTCAGACAATTCAGACCGGAATCACCGTGGAGAAGAACGGTGATAAAGAGGAAAGACCACCGTGAGACGGGAAATGAAGAAAACGGTTTCTACGGCGGAGTAAAGAAATTGGGTACGGAGGAAGAGATTTCTACGTGGAAGCAATTGTGGCCATCACAAGCCTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

371

Amino Acids

43.48

Weight (kDa)

8.79

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 59 - 101 6.7e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccBSI CCGCTC 1 cut(s) 707
AccI GTMKAC 1 cut(s) 591
AccII CGCG 1 cut(s) 600
AciI CCGC 3 cut(s) 707, 710, 1041
AclWI GGATC 2 cut(s) 511, 817
AcoI YGGCCR 2 cut(s) 697, 1094
AcsI RAATTY 1 cut(s) 451
AcvI CACGTG 2 cut(s) 767, 778
AfaI GTAC 4 cut(s) 14, 548, 903, 1060
AfiI CCNNNNNNNGG 4 cut(s) 54, 468, 706, 1012
AflIII ACRYGT 2 cut(s) 610, 777
AgsI TTSAA 6 cut(s) 350, 457, 480, 560, 661, 677
AhdI GACNNNNNGTC 1 cut(s) 760
AhlI ACTAGT 1 cut(s) 248
AjiI CACGTC 1 cut(s) 726
AjnI CCWGG 2 cut(s) 177, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 4 cut(s) 220, 235, 265, 680
AluI AGCT 4 cut(s) 220, 235, 265, 680
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 6 cut(s) 177, 305, 392, 733, 750, 1004
AlwI GGATC 2 cut(s) 511, 817
AlwNI CAGNNNCTG 1 cut(s) 736
AoxI GGCC 2 cut(s) 697, 1094
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 451
AsuHPI GGTGA 8 cut(s) 37, 216, 347, 733, 821, 949, 960, 997
BalI TGGCCA 1 cut(s) 1096
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 237
BbrPI CACGTG 2 cut(s) 767, 778
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 353
BccI CCATC 5 cut(s) 50, 235, 325, 934, 1105
BceAI ACGGC 2 cut(s) 913, 1054
BcgI CGANNNNNNTGC 2 cut(s) 782, 816
BciT130I CCWGG 2 cut(s) 179, 807
BcoDI GTCTC 6 cut(s) 177, 305, 392, 733, 750, 1004
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 2 cut(s) 249, 681
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 2 cut(s) 342, 708
BlsI GCNGC 2 cut(s) 343, 709
Bme1390I CCNGG 2 cut(s) 179, 807
BmeRI GACNNNNNGTC 1 cut(s) 760
BmgBI CACGTC 1 cut(s) 726
BmiI GGNNCC 3 cut(s) 59, 522, 578
BmrFI CCNGG 2 cut(s) 179, 807
BmsI GCATC 2 cut(s) 328, 628
BplI GAGNNNNNCTC 4 cut(s) 206, 238, 730, 762
BpmI CTGGAG 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 570, 732
BsaAI YACGTR 3 cut(s) 767, 778, 1080
BsaBI GATNNNNATC 1 cut(s) 508
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 484, 971, 1107
BsaWI WCCGGW 1 cut(s) 961
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 468, 706, 1012
Bse118I RCCGGY 1 cut(s) 699
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 508
BseBI CCWGG 2 cut(s) 179, 807
BseDI CCNNGG 3 cut(s) 484, 971, 1107
BseJI GATNNNNATC 1 cut(s) 508
BseLI CCNNNNNNNGG 4 cut(s) 54, 468, 706, 1012
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 600
BshFI GGCC 2 cut(s) 699, 1096
BshNI GGYRCC 1 cut(s) 520
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 3 cut(s) 188, 700, 962
BslI CCNNNNNNNGG 4 cut(s) 54, 468, 706, 1012
BsmAI GTCTC 6 cut(s) 177, 305, 392, 733, 750, 1004
BsmBI CGTCTC 2 cut(s) 750, 1004
BsnI GGCC 2 cut(s) 699, 1096
Bso31I GGTCTC 1 cut(s) 733
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 5 cut(s) 286, 503, 645, 769, 822
Bsp19I CCATGG 1 cut(s) 484
Bsp68I TCGCGA 1 cut(s) 600
BspACI CCGC 3 cut(s) 707, 710, 1041
BspANI GGCC 2 cut(s) 699, 1096
BspCNI CTCAG 1 cut(s) 729
BspFNI CGCG 1 cut(s) 600
BspHI TCATGA 1 cut(s) 621
BspLI GGNNCC 3 cut(s) 59, 522, 578
BspPI GGATC 2 cut(s) 511, 817
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 733
BsrBI CCGCTC 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 699
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 3 cut(s) 484, 971, 1107
BssMI GATC 5 cut(s) 286, 503, 645, 769, 822
BssT1I CCWWGG 2 cut(s) 484, 1107
Bst2UI CCWGG 2 cut(s) 179, 807
Bst4CI ACNGT 6 cut(s) 12, 744, 972, 985, 1007, 1031
Bst6I CTCTTC 2 cut(s) 128, 1062
BstBAI YACGTR 3 cut(s) 767, 778, 1080
BstC8I GCNNGC 3 cut(s) 78, 701, 705
BstDEI CTNAG 4 cut(s) 199, 266, 642, 737
BstDSI CCRYGG 2 cut(s) 484, 971
BstEII GGTNACC 1 cut(s) 809
BstFNI CGCG 1 cut(s) 600
BstKTI GATC 5 cut(s) 289, 506, 648, 772, 825
BstMAI GTCTC 6 cut(s) 177, 305, 392, 733, 750, 1004
BstMBI GATC 5 cut(s) 286, 503, 645, 769, 822
BstMWI GCNNNNNNNGC 1 cut(s) 1093
BstNI CCWGG 2 cut(s) 179, 807
BstNSI RCATGY 1 cut(s) 614
BstPI GGTNACC 1 cut(s) 809
BstSCI CCNGG 2 cut(s) 177, 805
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 822
BstYI RGATCY 1 cut(s) 822
BsuRI GGCC 2 cut(s) 699, 1096
BtgI CCRYGG 2 cut(s) 484, 971
BtrI CACGTC 1 cut(s) 726
BtuMI TCGCGA 1 cut(s) 600
Cac8I GCNNGC 3 cut(s) 78, 701, 705
CaiI CAGNNNCTG 1 cut(s) 736
CciI TCATGA 1 cut(s) 621
Cfr10I RCCGGY 1 cut(s) 699
CsiI ACCWGGT 1 cut(s) 805
Csp6I GTAC 4 cut(s) 13, 547, 902, 1059
CviAII CATG 6 cut(s) 117, 468, 485, 611, 622, 695
CviJI RGCY 9 cut(s) 76, 220, 235, 265, 680, 699, 736, 1096, 1106
CviKI_1 RGCY 9 cut(s) 76, 220, 235, 265, 680, 699, 736, 1096, 1106
CviQI GTAC 4 cut(s) 13, 547, 902, 1059
DdeI CTNAG 4 cut(s) 199, 266, 642, 737
DpnI GATC 5 cut(s) 288, 505, 647, 771, 824
DpnII GATC 5 cut(s) 286, 503, 645, 769, 822
DriI GACNNNNNGTC 1 cut(s) 760
EaeI YGGCCR 2 cut(s) 697, 1094
Eam1104I CTCTTC 2 cut(s) 128, 1062
Eam1105I GACNNNNNGTC 1 cut(s) 760
EarI CTCTTC 2 cut(s) 128, 1062
EciI GGCGGA 2 cut(s) 725, 1056
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 484, 1107
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 733
Eco53kI GAGCTC 1 cut(s) 235
Eco72I CACGTG 2 cut(s) 767, 778
Eco91I GGTNACC 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 177, 805
EcoT14I CCWWGG 2 cut(s) 484, 1107
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 2 cut(s) 484, 1107
Esp3I CGTCTC 2 cut(s) 750, 1004
FaeI CATG 6 cut(s) 120, 471, 488, 614, 625, 698
FatI CATG 6 cut(s) 116, 467, 484, 610, 621, 694
FauNDI CATATG 1 cut(s) 306
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 342, 708
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 342, 708
FspBI CTAG 2 cut(s) 249, 681
GluI GCNGC 2 cut(s) 342, 708
GsuI CTGGAG 1 cut(s) 451
HaeIII GGCC 2 cut(s) 699, 1096
HapII CCGG 3 cut(s) 188, 700, 962
Hin1II CATG 6 cut(s) 120, 471, 488, 614, 625, 698
HinfI GANTC 8 cut(s) 148, 346, 530, 553, 618, 870, 920, 965
HpaII CCGG 3 cut(s) 188, 700, 962
HphI GGTGA 8 cut(s) 37, 216, 347, 733, 821, 949, 960, 997
Hpy166II GTNNAC 2 cut(s) 422, 592
Hpy188I TCNGA 8 cut(s) 232, 262, 650, 784, 869, 925, 950, 959
Hpy188III TCNNGA 8 cut(s) 152, 350, 557, 599, 622, 661, 749, 820
Hpy8I GTNNAC 2 cut(s) 422, 592
Hpy99I CGWCG 2 cut(s) 837, 899
HpyCH4III ACNGT 6 cut(s) 12, 744, 972, 985, 1007, 1031
HpyCH4IV ACGT 5 cut(s) 366, 725, 766, 777, 1079
HpyCH4V TGCA 6 cut(s) 207, 242, 341, 467, 775, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 1093
HpyF3I CTNAG 4 cut(s) 199, 266, 642, 737
HpySE526I ACGT 5 cut(s) 366, 725, 766, 777, 1079
Hsp92II CATG 6 cut(s) 120, 471, 488, 614, 625, 698
KroI GCCGGC 1 cut(s) 699
KroNI GCCGGC 1 cut(s) 701
Kzo9I GATC 5 cut(s) 286, 503, 645, 769, 822
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 2 cut(s) 328, 628
MabI ACCWGGT 1 cut(s) 805
MaeI CTAG 2 cut(s) 249, 681
MaeII ACGT 5 cut(s) 366, 725, 766, 777, 1079
MaeIII GTNAC 4 cut(s) 632, 721, 762, 809
MalI GATC 5 cut(s) 288, 505, 647, 771, 824
MbiI CCGCTC 1 cut(s) 707
MboI GATC 5 cut(s) 286, 503, 645, 769, 822
MboII GAAGA 7 cut(s) 145, 151, 167, 336, 990, 1034, 1079
MfeI CAATTG 1 cut(s) 1088
MflI RGATCY 1 cut(s) 822
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 1096
MluCI AATT 5 cut(s) 451, 907, 953, 1052, 1088
MluNI TGGCCA 1 cut(s) 1096
MlyI GAGTC 1 cut(s) 914
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 9 cut(s) 26, 71, 129, 432, 494, 706, 726, 987, 1057
Mox20I TGGCCA 1 cut(s) 1096
MroNI GCCGGC 1 cut(s) 699
MscI TGGCCA 1 cut(s) 1096
MseI TTAA 3 cut(s) 113, 194, 473
MslI CAYNNNNRTG 2 cut(s) 115, 489
Msp20I TGGCCA 1 cut(s) 1096
MspI CCGG 3 cut(s) 188, 700, 962
MspR9I CCNGG 2 cut(s) 179, 807
MunI CAATTG 1 cut(s) 1088
MvaI CCWGG 2 cut(s) 179, 807
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 1 cut(s) 1093
NaeI GCCGGC 1 cut(s) 701
NcoI CCATGG 1 cut(s) 484
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 286, 503, 645, 769, 822
NgoMIV GCCGGC 1 cut(s) 699
NlaIII CATG 6 cut(s) 120, 471, 488, 614, 625, 698
NlaIV GGNNCC 3 cut(s) 59, 522, 578
NmeAIII GCCGAG 1 cut(s) 668
NmuCI GTSAC 3 cut(s) 721, 762, 809
NruI TCGCGA 1 cut(s) 600
NspI RCATGY 1 cut(s) 614
PagI TCATGA 1 cut(s) 621
PciI ACATGT 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 701
PfeI GAWTC 7 cut(s) 148, 346, 530, 553, 618, 870, 965
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 2 cut(s) 343, 709
PleI GAGTC 1 cut(s) 914
PmaCI CACGTG 2 cut(s) 767, 778
PmlI CACGTG 2 cut(s) 767, 778
PpsI GAGTC 1 cut(s) 914
Ppu21I YACGTR 3 cut(s) 767, 778, 1080
PscI ACATGT 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 177, 805
PspCI CACGTG 2 cut(s) 767, 778
PspEI GGTNACC 1 cut(s) 809
PspGI CCWGG 2 cut(s) 177, 805
PspN4I GGNNCC 3 cut(s) 59, 522, 578
PstNI CAGNNNCTG 1 cut(s) 736
PsuI RGATCY 1 cut(s) 822
RruI TCGCGA 1 cut(s) 600
RsaI GTAC 4 cut(s) 14, 548, 903, 1060
RsaNI GTAC 4 cut(s) 13, 547, 902, 1059
RseI CAYNNNNRTG 2 cut(s) 115, 489
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 113, 194, 473
SatI GCNGC 2 cut(s) 342, 708
Sau3AI GATC 5 cut(s) 286, 503, 645, 769, 822
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 2 cut(s) 179, 807
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 805
SfaNI GCATC 2 cut(s) 328, 628
SfcI CTRYAG 1 cut(s) 525
SmiMI CAYNNNNRTG 2 cut(s) 115, 489
SmlI CTYRAG 2 cut(s) 585, 747
SmoI CTYRAG 2 cut(s) 585, 747
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 5 cut(s) 451, 907, 953, 1052, 1088
SsiI CCGC 3 cut(s) 707, 710, 1041
SspMI CTAG 2 cut(s) 249, 681
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 177, 805
StyI CCWWGG 2 cut(s) 484, 1107
TaaI ACNGT 6 cut(s) 12, 744, 972, 985, 1007, 1031
TaiI ACGT 5 cut(s) 369, 728, 769, 780, 1082
TaqI TCGA 4 cut(s) 437, 551, 802, 819
TasI AATT 5 cut(s) 451, 907, 953, 1052, 1088
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 7 cut(s) 148, 346, 530, 553, 618, 870, 965
Tru1I TTAA 3 cut(s) 113, 194, 473
Tru9I TTAA 3 cut(s) 113, 194, 473
TseFI GTSAC 3 cut(s) 721, 762, 809
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 3 cut(s) 721, 762, 809
TspDTI ATGAA 4 cut(s) 13, 174, 610, 1035
TspGWI ACGGA 4 cut(s) 83, 621, 810, 1076
XapI RAATTY 1 cut(s) 451
XceI RCATGY 1 cut(s) 614
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 2 cut(s) 249, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.