Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009280

Physical Location & Seq

Genomic Coordinates Forward (+)

36093795 .. 36098859

Gene Structure 5065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG217300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTCTATCTCCTAATATCTTGTGTCTCCTTCATCCTTGTTTCCAAGTCCTTCACCAACAAGCAACCATGGCAGCAGGGTAAGCTCAAGTTGTTTTCAATTGGGCCATCAAATTTCCTAGTGTCCTGGTTCCAGAACAGTAGGCTTTATACAGGTTTATTCCAACCCATTACCTTCCAAGTTAAACAAATGATGGCCGAGTCTTCTAGTTCAAGATTAGTTGTGGAGAATGTGGATCAGGAACAACAAGCTGGCCATGCTTCTTTATTGGATTTGCCTGATTTGACATTGGAGTGCATTCTTGAAAGGCTTTCCCCATCTGGGTTATGCAATATGGCTGGAGTTTGTACTTCTATGAGGGATAGGTGTACAAGTGACCATTTTTGGAAGAAGCATATGAAGCAGAAATGGGGTAAACTGATTCGGGCTGCTGCTTATAGAGAATGGGAATTGCAGCATATGGCTATAGCAAGAAGAAGAAACAGCGAGTCTGATCAAACCAAGAAGAAAAGTGTACTTGACTCCCTTTCTGGGTTTTTACCTTTTTGTTCATGGGTGATCAGACCAAAATCACAAAGTTTCAGGGTGAAGAGTACTGGTGCTACTACTTTGCCGGTTGATTCCATCATGTCCTTATATCTTTCTCTTGAAAGAGGGGACTTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAACGGTAATGTAGGCTTTATGCTGTCTTGTTATGATGCACAACTGAGCTATGATTCGGGAACAGACACATTTCAAGCAAGGTATAACAACAGTGGTGACCTAGCCTTAGTCGGTTTTGTGAATTTTCTTCTAGTCTTGGTAGTCTTACAAGCAAAGTTGTTGTTTCAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

288

Amino Acids

32.78

Weight (kDa)

9.14

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	89 - 131	2.2e-08	F-box domain
F-box-like	PF12937	90 - 132	1.2e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41170 AT2G41170 AT2G41170
fragaria_vesca	FvH4_2g14090 FvH4_2g14090
malus_domestica	MD12G1096100.v1.1 MD14G1089800.v1.1
prunus_persica	Prupe.7G034300_v2.0.a1
pyrus_communis	pycom12g08510 pycom14g08060
rosa_chinensis	RchiOBHm_Chr6g0276171
rosa_laevigata	RLG00000013412
rosa_multiflora	Rmu_ssc0000201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192510
rosa_rugosa	Rorug06G0098600 Rorug06G0098700 Rorug06G0098800
rosa_samantha	Rh6AG210400 Rh6BG214600 Rh6CG217300 Rh6DG206900
rosa_wichuraiana	Rw6G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	2 cut(s)	195, 253
AcsI	RAATTY	2 cut(s)	112, 814
AfaI	GTAC	4 cut(s)	349, 370, 516, 595
AfiI	CCNNNNNNNGG	3 cut(s)	321, 531, 676
AgsI	TTSAA	5 cut(s)	99, 213, 305, 650, 767
AjnI	CCWGG	1 cut(s)	125
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	4 cut(s)	85, 251, 674, 741
AluI	AGCT	4 cut(s)	85, 251, 674, 741
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	3 cut(s)	104, 195, 253
ApeKI	GCWGC	4 cut(s)	73, 428, 431, 454
ApoI	RAATTY	2 cut(s)	112, 814
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	4 cut(s)	46, 568, 598, 800
BalI	TGGCCA	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	85, 415, 418, 466
BccI	CCATC	4 cut(s)	115, 187, 325, 632
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	2 cut(s)	493, 558
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	4 cut(s)	119, 207, 794, 824
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	4 cut(s)	74, 429, 432, 455
BlsI	GCNGC	4 cut(s)	75, 430, 433, 456
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	131, 668
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 531, 676
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	321, 531, 676
BseMII	CTCAG	2 cut(s)	689, 728
BseNI	ACTGG	1 cut(s)	601
BseXI	GCAGC	4 cut(s)	85, 415, 418, 466
BseYI	CCCAGC	1 cut(s)	670
BshFI	GGCC	3 cut(s)	106, 197, 255
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	3 cut(s)	321, 531, 676
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	106, 197, 255
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	235, 493, 558
Bsp19I	CCATGG	1 cut(s)	68
BspANI	GGCC	3 cut(s)	106, 197, 255
BspCNI	CTCAG	2 cut(s)	688, 729
BspLI	GGNNCC	2 cut(s)	131, 668
BspPI	GGATC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	235, 493, 558
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	4 cut(s)	140, 689, 698, 785
Bst6I	CTCTTC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	675, 737, 799
BstDSI	CCRYGG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	3 cut(s)	238, 496, 561
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	235, 493, 558
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 82, 257, 400
BstNI	CCWGG	1 cut(s)	127
BstPI	GGTNACC	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	85, 415, 418, 466
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	106, 197, 255
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	790
Cac8I	GCNNGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	4 cut(s)	348, 369, 515, 594
CviAII	CATG	4 cut(s)	69, 257, 552, 628
CviQI	GTAC	4 cut(s)	348, 369, 515, 594
DdeI	CTNAG	3 cut(s)	675, 737, 799
DpnI	GATC	3 cut(s)	237, 495, 560
DpnII	GATC	3 cut(s)	235, 493, 558
EaeI	YGGCCR	2 cut(s)	195, 253
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	788
EcoO65I	GGTNACC	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	72, 260, 555, 631
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	4 cut(s)	68, 256, 551, 627
FauNDI	CATATG	2 cut(s)	396, 459
FbaI	TGATCA	2 cut(s)	493, 558
Fnu4HI	GCNGC	4 cut(s)	74, 429, 432, 455
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	74, 429, 432, 455
FspBI	CTAG	4 cut(s)	119, 207, 794, 824
GluI	GCNGC	4 cut(s)	74, 429, 432, 455
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	106, 197, 255
HapII	CCGG	1 cut(s)	614
Hin1II	CATG	4 cut(s)	72, 260, 555, 631
HinfI	GANTC	6 cut(s)	200, 421, 488, 521, 620, 746
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	4 cut(s)	46, 568, 598, 800
Hpy166II	GTNNAC	3 cut(s)	369, 416, 515
Hpy188I	TCNGA	3 cut(s)	493, 563, 861
Hpy188III	TCNNGA	6 cut(s)	133, 213, 239, 302, 647, 750
Hpy8I	GTNNAC	3 cut(s)	369, 416, 515
HpyAV	CCTTC	3 cut(s)	40, 61, 184
HpyCH4III	ACNGT	4 cut(s)	140, 689, 698, 785
HpyCH4V	TGCA	4 cut(s)	297, 330, 454, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 82, 257, 400
HpyF3I	CTNAG	3 cut(s)	675, 737, 799
Hsp92II	CATG	4 cut(s)	72, 260, 555, 631
Ksp22I	TGATCA	2 cut(s)	493, 558
Kzo9I	GATC	3 cut(s)	235, 493, 558
Lsp1109I	GCAGC	4 cut(s)	85, 415, 418, 466
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	4 cut(s)	119, 207, 794, 824
MaeIII	GTNAC	2 cut(s)	374, 788
MalI	GATC	3 cut(s)	237, 495, 560
MboI	GATC	3 cut(s)	235, 493, 558
MboII	GAAGA	7 cut(s)	195, 400, 486, 489, 517, 601, 812
MfeI	CAATTG	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	4 cut(s)	99, 112, 449, 814
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	3 cut(s)	209, 497, 515
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	351, 647
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	2 cut(s)	183, 865
MslI	CAYNNNNRTG	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	255
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	4 cut(s)	70, 82, 257, 400
NcoI	CCATGG	1 cut(s)	68
NdeI	CATATG	2 cut(s)	396, 459
NdeII	GATC	3 cut(s)	235, 493, 558
NlaIII	CATG	4 cut(s)	72, 260, 555, 631
NlaIV	GGNNCC	2 cut(s)	131, 668
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	374, 788
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	421, 620, 746
PkrI	GCNGC	4 cut(s)	75, 430, 433, 456
PleI	GAGTC	3 cut(s)	208, 496, 515
PpsI	GAGTC	3 cut(s)	208, 496, 515
Psp6I	CCWGG	1 cut(s)	125
PspEI	GGTNACC	1 cut(s)	788
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	131, 668
PspPI	GGNCC	1 cut(s)	104
RsaI	GTAC	4 cut(s)	349, 370, 516, 595
RsaNI	GTAC	4 cut(s)	348, 369, 515, 594
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	183, 865
SatI	GCNGC	4 cut(s)	74, 429, 432, 455
Sau3AI	GATC	3 cut(s)	235, 493, 558
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	3 cut(s)	209, 497, 515
ScrFI	CCNGG	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	99, 112, 449, 814
SspMI	CTAG	4 cut(s)	119, 207, 794, 824
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	4 cut(s)	140, 689, 698, 785
TasI	AATT	4 cut(s)	99, 112, 449, 814
TatI	WGTACW	4 cut(s)	347, 368, 514, 593
TfiI	GAWTC	3 cut(s)	421, 620, 746
Tru1I	TTAA	2 cut(s)	183, 865
Tru9I	TTAA	2 cut(s)	183, 865
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	374, 788
TseI	GCWGC	4 cut(s)	73, 428, 431, 454
Tsp45I	GTSAC	2 cut(s)	374, 788
TspDTI	ATGAA	3 cut(s)	22, 413, 540
TspRI	CASTG	1 cut(s)	790
XapI	RAATTY	2 cut(s)	112, 814
XspI	CTAG	4 cut(s)	119, 207, 794, 824
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.