Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009280

Physical Location & Seq

Genomic Coordinates Forward (+)

6369040 .. 6372740

Gene Structure 3701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCTTTACCTCCTAATTTCTTGTGTCTCATTCATCCTTATTTCCAAGTCCTTCACTCACAAGCCAATACAAGCATGGGAGGGTAAGCTAAAATTGAGTTCTTTTTGGTTTTGGGGTGAGTTTTCAAGTTTTCTTGTGTCCTGGTTCCAGAAAAGTAGGCTTGCTATTGAGTTGTTCCAACCCATCATCTGCAAATTGAAAAAGATGATGACTTTTAGTTCAAAAGTAGAGAATGTGGAGGAGAGAGACAGTCTCTCTCTCCTGGATTTGCCTGACTTGACCTTGGAATGCATTCTTGAGAGGCTTTCCCCATCTGGGTTGTGCACTATGGGAGGAGTTTGTACTTCTTTGAGGGAGAGGTGCAGAGATGATCGTTTATGGGAGAGGCACATGATGGAGAAATGGGGTAGACTGATTGGGGCTGCTGCCTATAGAGAATGGCAATTACATGTGGCCTCAAGAAGCAGAGTCAGAAATATCTCTGATCAAACCAAGACAAAAGGTCTTTTTGAGTCTCTTGTGAGTAAAATTTGGCCTTTTTCATGGATCAGACCAAAATTACCAAGTTCTGATTGCAAAGTGAGGACTAGTTTACCGGTCGAGTCAGTCATGTCTCTGTATCTTTCTCTTGAAAGTGGCAAGTTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAATGGTAATGTAGGCTTTATGCTGTCTTGTTATGATGCACAAGTGAGCTATGATTCAAGGACAAACACATTTCAAGCAAGGTATTCACCTTATGGGAGGAGGGCAACAGAGGATAATATTCCATGGGATAGACTAAGAGCGGCTCCAGTTGATACTCCCTCACATAAGCTTCATGTCTCTGATTGTCTACATGACTTGAAACCCGGTGATCATATTGAAATCCAGTGGAGAAGAAACAAAGAATTCCCTTATGGTTGGTGGTATGGTGTCATTGGTCACTTGGAGTTGTGTGATGGGCATGAGAATCGCTGCCGTTGTCACTACAGTGATACAGTAACACTGGAGTTCAGTCAGTACACTCCTGGATCCAGATGGAGACAAGTGACGATAAACAGGAAAGACCATCGAGAAGAAGGCGATGAAGCAGATGGCTTCTATGGAGGAATCCGAAAGCTTTACAATGAGGAGGAAATTGCAAGGTGGAAGCGCCTATGGCCTACCCAAGTCCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

397

Amino Acids

46.51

Weight (kDa)

8.63

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41170 AT2G41170 AT2G41170
fragaria_vesca	FvH4_2g14090 FvH4_2g14090
malus_domestica	MD12G1096100.v1.1 MD14G1089800.v1.1
prunus_persica	Prupe.7G034300_v2.0.a1
pyrus_communis	pycom12g08510 pycom14g08060
rosa_chinensis	RchiOBHm_Chr6g0276171
rosa_laevigata	RLG00000013412
rosa_multiflora	Rmu_ssc0000201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192510
rosa_rugosa	Rorug06G0098600 Rorug06G0098700 Rorug06G0098800
rosa_samantha	Rh6AG210400 Rh6BG214600 Rh6CG217300 Rh6DG206900
rosa_wichuraiana	Rw6G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1183
AccBSI	CCGCTC	1 cut(s)	815
AccI	GTMKAC	2 cut(s)	409, 862
AciI	CCGC	1 cut(s)	815
AclWI	GGATC	3 cut(s)	554, 1035, 1048
AcsI	RAATTY	2 cut(s)	528, 917
AfaI	GTAC	2 cut(s)	343, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	315, 658, 1183
AflIII	ACRYGT	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	595
AgsI	TTSAA	8 cut(s)	126, 199, 222, 632, 732, 749, 874, 893
AhdI	GACNNNNNGTC	1 cut(s)	501
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	4 cut(s)	140, 261, 1036, 1182
AleI	CACNNNNGTG	1 cut(s)	999
AluBI	AGCT	5 cut(s)	88, 656, 723, 844, 1129
AluI	AGCT	5 cut(s)	88, 656, 723, 844, 1129
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	7 cut(s)	31, 240, 257, 519, 618, 856, 1045
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	3 cut(s)	554, 1035, 1048
AoxI	GGCC	3 cut(s)	453, 533, 1169
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	422, 425, 984
ApoI	RAATTY	2 cut(s)	528, 917
AsiGI	ACCGGT	1 cut(s)	595
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	1164
AsuC2I	CCSGG	1 cut(s)	879
AsuHPI	GGTGA	3 cut(s)	128, 753, 893
BaeGI	GKGCMC	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	1040
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	409, 412, 971
BccI	CCATC	7 cut(s)	191, 319, 388, 962, 1041, 1086, 1097
BceAI	ACGGC	1 cut(s)	972
BcgI	CGANNNNNNTGC	2 cut(s)	962, 996
BciT130I	CCWGG	4 cut(s)	142, 263, 1038, 1184
BclI	TGATCA	2 cut(s)	484, 883
BcnI	CCSGG	1 cut(s)	879
BcoDI	GTCTC	7 cut(s)	31, 240, 257, 519, 618, 856, 1045
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	430, 997
BfoI	RGCGCY	1 cut(s)	1165
BisI	GCNGC	4 cut(s)	423, 426, 816, 985
BlsI	GCNGC	4 cut(s)	424, 427, 817, 986
Bme1390I	CCNGG	5 cut(s)	142, 263, 879, 1038, 1184
BmeRI	GACNNNNNGTC	1 cut(s)	501
BmiI	GGNNCC	4 cut(s)	146, 650, 819, 1042
BmrFI	CCNGG	5 cut(s)	142, 263, 879, 1038, 1184
BmsI	GCATC	1 cut(s)	700
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
BpmI	CTGGAG	2 cut(s)	804, 1037
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	317, 442
BpuMI	CCSGG	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	282, 797
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 658, 1183
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	3 cut(s)	821, 898, 1020
BseBI	CCWGG	4 cut(s)	142, 263, 1038, 1184
BseDI	CCNNGG	2 cut(s)	282, 797
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	315, 658, 1183
BseMII	CTCAG	1 cut(s)	671
BseNI	ACTGG	3 cut(s)	821, 898, 1020
BseRI	GAGGAG	4 cut(s)	254, 348, 787, 1154
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	409, 412, 971
BseYI	CCCAGC	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	455, 535, 1171
BshTI	ACCGGT	1 cut(s)	595
BsiEI	CGRYCG	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	596, 879
BslI	CCNNNNNNNGG	3 cut(s)	315, 658, 1183
BsmAI	GTCTC	7 cut(s)	31, 240, 257, 519, 618, 856, 1045
BsmI	GAATGC	2 cut(s)	291, 293
BsnI	GGCC	3 cut(s)	455, 535, 1171
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	5 cut(s)	370, 484, 546, 883, 1040
Bsp19I	CCATGG	1 cut(s)	797
BspACI	CCGC	1 cut(s)	815
BspANI	GGCC	3 cut(s)	455, 535, 1171
BspCNI	CTCAG	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	146, 650, 819, 1042
BspPI	GGATC	3 cut(s)	554, 1035, 1048
BsrBI	CCGCTC	1 cut(s)	815
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	3 cut(s)	821, 898, 1020
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	282, 797
BssMI	GATC	5 cut(s)	370, 484, 546, 883, 1040
BssT1I	CCWWGG	2 cut(s)	282, 797
Bst2UI	CCWGG	4 cut(s)	142, 263, 1038, 1184
Bst4CI	ACNGT	4 cut(s)	251, 671, 1001, 1009
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	657, 809
BstDSI	CCRYGG	1 cut(s)	797
BstF5I	GGATG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	1165
BstHHI	GCGC	1 cut(s)	1164
BstKTI	GATC	5 cut(s)	373, 487, 549, 886, 1043
BstMAI	GTCTC	7 cut(s)	31, 240, 257, 519, 618, 856, 1045
BstMBI	GATC	5 cut(s)	370, 484, 546, 883, 1040
BstMCI	CGRYCG	1 cut(s)	600
BstMWI	GCNNNNNNNGC	1 cut(s)	1168
BstNI	CCWGG	4 cut(s)	142, 263, 1038, 1184
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	5 cut(s)	140, 261, 877, 1036, 1182
BstSFI	CTRYAG	2 cut(s)	430, 997
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	409, 412, 971
BstX2I	RGATCY	1 cut(s)	1040
BstYI	RGATCY	1 cut(s)	1040
BsuRI	GGCC	3 cut(s)	455, 535, 1171
BtgI	CCRYGG	1 cut(s)	797
BtgZI	GCGATG	1 cut(s)	1107
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	905, 1006, 1013
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	1164
Cfr10I	RCCGGY	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	342, 1030
CspAI	ACCGGT	1 cut(s)	595
CviAII	CATG	9 cut(s)	75, 391, 449, 543, 610, 798, 848, 866, 974
CviQI	GTAC	2 cut(s)	342, 1030
DdeI	CTNAG	2 cut(s)	657, 809
DpnI	GATC	5 cut(s)	372, 486, 548, 885, 1042
DpnII	GATC	5 cut(s)	370, 484, 546, 883, 1040
DriI	GACNNNNNGTC	1 cut(s)	501
Eam1105I	GACNNNNNGTC	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	282, 797
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	4 cut(s)	140, 261, 1036, 1182
EcoT14I	CCWWGG	2 cut(s)	282, 797
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	2 cut(s)	282, 797
FaeI	CATG	9 cut(s)	78, 394, 452, 546, 613, 801, 851, 869, 977
FatI	CATG	9 cut(s)	74, 390, 448, 542, 609, 797, 847, 865, 973
FbaI	TGATCA	2 cut(s)	484, 883
FblI	GTMKAC	2 cut(s)	409, 862
Fnu4HI	GCNGC	4 cut(s)	423, 426, 816, 985
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	423, 426, 816, 985
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	1163
GluI	GCNGC	4 cut(s)	423, 426, 816, 985
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	2 cut(s)	804, 1037
HaeII	RGCGCY	1 cut(s)	1165
HaeIII	GGCC	3 cut(s)	455, 535, 1171
HapII	CCGG	2 cut(s)	596, 879
HhaI	GCGC	1 cut(s)	1164
Hin1II	CATG	9 cut(s)	78, 394, 452, 546, 613, 801, 851, 869, 977
Hin6I	GCGC	1 cut(s)	1162
HinP1I	GCGC	1 cut(s)	1162
HindIII	AAGCTT	2 cut(s)	842, 1127
HinfI	GANTC	6 cut(s)	468, 512, 602, 728, 979, 1119
HpaII	CCGG	2 cut(s)	596, 879
HphI	GGTGA	3 cut(s)	128, 753, 893
Hpy166II	GTNNAC	5 cut(s)	324, 410, 593, 863, 1032
Hpy188I	TCNGA	6 cut(s)	473, 484, 551, 571, 856, 1124
Hpy188III	TCNNGA	6 cut(s)	148, 296, 459, 629, 1044, 1082
Hpy8I	GTNNAC	5 cut(s)	324, 410, 593, 863, 1032
HpyAV	CCTTC	2 cut(s)	61, 1082
HpyCH4III	ACNGT	4 cut(s)	251, 671, 1001, 1009
HpyCH4V	TGCA	7 cut(s)	192, 291, 324, 363, 576, 713, 1151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1168
HpyF3I	CTNAG	2 cut(s)	657, 809
Hsp92II	CATG	9 cut(s)	78, 394, 452, 546, 613, 801, 851, 869, 977
HspAI	GCGC	1 cut(s)	1162
Ksp22I	TGATCA	2 cut(s)	484, 883
Kzo9I	GATC	5 cut(s)	370, 484, 546, 883, 1040
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	3 cut(s)	409, 412, 971
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	4 cut(s)	950, 992, 1009, 1057
MalI	GATC	5 cut(s)	372, 486, 548, 885, 1042
MbiI	CCGCTC	1 cut(s)	815
MboI	GATC	5 cut(s)	370, 484, 546, 883, 1040
MboII	GAAGA	2 cut(s)	918, 1097
MflI	RGATCY	1 cut(s)	1040
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	8 cut(s)	15, 92, 194, 443, 528, 557, 917, 1146
MlyI	GAGTC	3 cut(s)	477, 521, 611
MmeI	TCCRAC	1 cut(s)	202
Mph1103I	ATGCAT	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	999
MspI	CCGG	2 cut(s)	596, 879
MspR9I	CCNGG	5 cut(s)	142, 263, 879, 1038, 1184
Mva1269I	GAATGC	2 cut(s)	291, 293
MvaI	CCWGG	4 cut(s)	142, 263, 1038, 1184
MwoI	GCNNNNNNNGC	1 cut(s)	1168
NciI	CCSGG	1 cut(s)	879
NcoI	CCATGG	1 cut(s)	797
NdeII	GATC	5 cut(s)	370, 484, 546, 883, 1040
NlaIII	CATG	9 cut(s)	78, 394, 452, 546, 613, 801, 851, 869, 977
NlaIV	GGNNCC	4 cut(s)	146, 650, 819, 1042
NmuCI	GTSAC	3 cut(s)	950, 992, 1057
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	999
PciI	ACATGT	1 cut(s)	448
PctI	GAATGC	2 cut(s)	291, 293
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	728, 979, 1119
PflMI	CCANNNNNTGG	1 cut(s)	1183
PfoI	TCCNGGA	3 cut(s)	261, 1036, 1182
PinAI	ACCGGT	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	424, 427, 817, 986
PleI	GAGTC	3 cut(s)	476, 520, 610
PpsI	GAGTC	3 cut(s)	476, 520, 610
PscI	ACATGT	1 cut(s)	448
Psp6I	CCWGG	4 cut(s)	140, 261, 1036, 1182
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	4 cut(s)	140, 261, 1036, 1182
PspN4I	GGNNCC	4 cut(s)	146, 650, 819, 1042
PsuI	RGATCY	1 cut(s)	1040
RsaI	GTAC	2 cut(s)	343, 1031
RsaNI	GTAC	2 cut(s)	342, 1030
RseI	CAYNNNNRTG	1 cut(s)	999
SatI	GCNGC	4 cut(s)	423, 426, 816, 985
Sau3AI	GATC	5 cut(s)	370, 484, 546, 883, 1040
SchI	GAGTC	3 cut(s)	477, 521, 611
ScrFI	CCNGG	5 cut(s)	142, 263, 879, 1038, 1184
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	700
SfcI	CTRYAG	2 cut(s)	430, 997
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	2 cut(s)	296, 457
SmoI	CTYRAG	2 cut(s)	296, 457
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	8 cut(s)	15, 92, 194, 443, 528, 557, 917, 1146
SsiI	CCGC	1 cut(s)	815
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	5 cut(s)	140, 261, 877, 1036, 1182
StyI	CCWWGG	2 cut(s)	282, 797
TaaI	ACNGT	4 cut(s)	251, 671, 1001, 1009
TaqI	TCGA	2 cut(s)	600, 1081
TasI	AATT	8 cut(s)	15, 92, 194, 443, 528, 557, 917, 1146
TatI	WGTACW	2 cut(s)	341, 1029
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	3 cut(s)	728, 979, 1119
TscAI	CASTG	3 cut(s)	905, 1006, 1020
TseFI	GTSAC	3 cut(s)	950, 992, 1057
TseI	GCWGC	3 cut(s)	422, 425, 984
Tsp45I	GTSAC	3 cut(s)	950, 992, 1057
TspDTI	ATGAA	4 cut(s)	22, 531, 836, 1110
TspRI	CASTG	3 cut(s)	905, 1006, 1020
Van91I	CCANNNNNTGG	1 cut(s)	1183
VneI	GTGCAC	1 cut(s)	322
XapI	RAATTY	2 cut(s)	528, 917
XceI	RCATGY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72
XmiI	GTMKAC	2 cut(s)	409, 862
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	588
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.