Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009280

Physical Location & Seq

Genomic Coordinates Forward (+)

13417206 .. 13420415

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1096100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCTTTGCCTCCTTATTTCTTGTGCCTCTTTCATCCTCCTTTCTAAGTCCTTCACTCACCACAAACCAATATTACAAACATGGGAGGATAGCCTCAGATTAATCTCACTCAAGTTTTTGGGTGGATTTTTAAGTTTTCTCCCCAAAAGCAGGATTTCACTCCAACCCATCACCTCCAAATTCAAAAAGATGGTGACTTTTGGCTCAAATGTGGAGGTGGAGAGAGAAACTAGTCTCTCTCTCCTGGATTTGCCTGACTTGGCCTTGGACTGCATTCTTGAGAGGCTTCCCCCATCTGGGTTGTGCTCCATGGCAGCAGTTTGTGCTTCTTTGAGGGAGAGCTGCACAAGTGATCACTTGTGGGGGAACCATATGAACCACAAATGGGGTCGACTTATAGGGCCTGCTGCTTACAGAGAGTGGCAGTTGCATGGGGCCTCAAGAAACAGAATCAGAAATTACTCCGTTCGGACCGAGAAAAAAGGTCTAATGGAGTCCCTTGAGGCTAGTATTTTGCATTCCTCGTGGATTACTTGGCAAAAATTAACTCCAGTATGTAAAGTGAAGGCTAGTACGAGTTGTTTATCGGTCGATTCGATCATGTCTCTGTATCTCTCTCTTGAAACTGGCAAGTTTTGGTTCCCGGCTCAGGTCTATAACCGCGAGAACGGTAATGTAGGGTTTATGCTGTCTTGTTATGATGCACGAGTGCGCTATGATTCGACGACAAACACATTTCAAGCAAGGTATTCACCTTACGGGCGGAGGGCAACAGAGGAAAATATACCATGGGATAGACTAAGAGCGGCTCCAGTTGATACTCCTCCTCACAAACTTCATGTCTCCGATTGTTTACATGACTTAAAACCCGGTGATTATATTGAGATCCAGTGGAGAAGAAACAAAGAATTTCCCTACGGTTGGTGGTATGGTGTCATTGGTCACTTAGAGTTTTGCGATGGGAATGAGAATGGCTGCCGTTGTCACTGCAATGATATAGTAAAACTGGAGTTCAGTCAGTACACTCCTGGTTCCCGATGGAGAGAAATGACGATAAACAGGAAGGACCATCGCGAAGAAGGCAATGAAGCAGACGGCTTCTATGCAGGAATCCGAAAGATTTACAATGAGGAGGAAATTGCAAGGTGGAAGCGCTTATGGCCGACCCAAGTTCTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

394

Amino Acids

45.37

Weight (kDa)

8.67

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	81 - 121	9.6e-07	F-box domain
F-box-like	PF12937	82 - 122	4e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41170 AT2G41170 AT2G41170
fragaria_vesca	FvH4_2g14090 FvH4_2g14090
malus_domestica	MD12G1096100.v1.1 MD14G1089800.v1.1
prunus_persica	Prupe.7G034300_v2.0.a1
pyrus_communis	pycom12g08510 pycom14g08060
rosa_chinensis	RchiOBHm_Chr6g0276171
rosa_laevigata	RLG00000013412
rosa_multiflora	Rmu_ssc0000201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192510
rosa_rugosa	Rorug06G0098600 Rorug06G0098700 Rorug06G0098800
rosa_samantha	Rh6AG210400 Rh6BG214600 Rh6CG217300 Rh6DG206900
rosa_wichuraiana	Rw6G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1174
AccBSI	CCGCTC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	391
AccII	CGCG	2 cut(s)	663, 1074
AciI	CCGC	3 cut(s)	661, 763, 806
AclWI	GGATC	1 cut(s)	880
AcoI	YGGCCR	1 cut(s)	1160
AcsI	RAATTY	2 cut(s)	179, 908
AfaI	GTAC	2 cut(s)	574, 1022
AfeI	AGCGCT	1 cut(s)	1154
AfiI	CCNNNNNNNGG	7 cut(s)	150, 296, 297, 385, 649, 921, 1174
AgsI	TTSAA	3 cut(s)	184, 623, 740
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	243, 1027
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	3 cut(s)	239, 609, 847
AlwI	GGATC	1 cut(s)	880
Aor51HI	AGCGCT	1 cut(s)	1154
AoxI	GGCC	4 cut(s)	261, 401, 435, 1160
ApeKI	GCWGC	4 cut(s)	314, 342, 407, 975
ApoI	RAATTY	2 cut(s)	179, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	825, 857
AseI	ATTAAT	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	714, 1155
AspS9I	GGNCC	4 cut(s)	401, 435, 471, 1066
AsuC2I	CCSGG	2 cut(s)	644, 870
AsuHPI	GGTGA	5 cut(s)	50, 163, 205, 744, 884
AvaII	GGWCC	2 cut(s)	471, 1066
BauI	CACGAG	2 cut(s)	523, 705
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	326, 329, 394, 962
BccI	CCATC	6 cut(s)	176, 184, 301, 953, 1032, 1077
BceAI	ACGGC	2 cut(s)	963, 1111
BciT130I	CCWGG	2 cut(s)	245, 1029
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	644, 870
BcoDI	GTCTC	3 cut(s)	239, 609, 847
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	3 cut(s)	231, 507, 570
BfoI	RGCGCY	1 cut(s)	1156
BisI	GCNGC	5 cut(s)	315, 343, 408, 807, 976
BlsI	GCNGC	5 cut(s)	316, 344, 409, 808, 977
Bme1390I	CCNGG	4 cut(s)	245, 644, 870, 1029
Bme18I	GGWCC	2 cut(s)	471, 1066
BmgT120I	GGNCC	4 cut(s)	401, 435, 471, 1066
BmiI	GGNNCC	5 cut(s)	368, 436, 641, 810, 1033
BmrFI	CCNGG	4 cut(s)	245, 644, 870, 1029
BmsI	GCATC	1 cut(s)	691
BpmI	CTGGAG	3 cut(s)	534, 795, 1028
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	4 cut(s)	95, 299, 424, 521
BpuMI	CCSGG	2 cut(s)	644, 870
BsaJI	CCNNGG	3 cut(s)	264, 309, 788
Bsc4I	CCNNNNNNNGG	7 cut(s)	150, 296, 297, 385, 649, 921, 1174
Bse1I	ACTGG	5 cut(s)	551, 631, 812, 889, 1011
Bse3DI	GCAATG	2 cut(s)	997, 1090
BseBI	CCWGG	2 cut(s)	245, 1029
BseDI	CCNNGG	3 cut(s)	264, 309, 788
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	7 cut(s)	150, 296, 297, 385, 649, 921, 1174
BseMI	GCAATG	2 cut(s)	997, 1090
BseMII	CTCAG	2 cut(s)	109, 662
BseNI	ACTGG	5 cut(s)	551, 631, 812, 889, 1011
BseRI	GAGGAG	3 cut(s)	813, 816, 1145
BseXI	GCAGC	4 cut(s)	326, 329, 394, 962
BsgI	GTGCAG	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	663, 1074
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	4 cut(s)	263, 403, 437, 1162
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	644, 870
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	7 cut(s)	150, 296, 297, 385, 649, 921, 1174
BsmAI	GTCTC	3 cut(s)	239, 609, 847
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	2 cut(s)	273, 517
BsnI	GGCC	4 cut(s)	263, 403, 437, 1162
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	352, 597, 885
Bsp19I	CCATGG	2 cut(s)	309, 788
Bsp68I	TCGCGA	1 cut(s)	1074
BspACI	CCGC	3 cut(s)	661, 763, 806
BspANI	GGCC	4 cut(s)	263, 403, 437, 1162
BspCNI	CTCAG	2 cut(s)	108, 661
BspFNI	CGCG	2 cut(s)	663, 1074
BspLI	GGNNCC	5 cut(s)	368, 436, 641, 810, 1033
BspPI	GGATC	1 cut(s)	880
BsrBI	CCGCTC	1 cut(s)	806
BsrDI	GCAATG	2 cut(s)	997, 1090
BsrI	ACTGG	5 cut(s)	551, 631, 812, 889, 1011
BssECI	CCNNGG	3 cut(s)	264, 309, 788
BssMI	GATC	3 cut(s)	352, 597, 885
BssSI	CACGAG	2 cut(s)	523, 705
BssT1I	CCWWGG	3 cut(s)	264, 309, 788
Bst2BI	CACGAG	2 cut(s)	523, 705
Bst2UI	CCWGG	2 cut(s)	245, 1029
Bst4CI	ACNGT	2 cut(s)	671, 920
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	5 cut(s)	45, 95, 648, 800, 946
BstDSI	CCRYGG	2 cut(s)	309, 788
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	2 cut(s)	663, 1074
BstH2I	RGCGCY	1 cut(s)	1156
BstHHI	GCGC	2 cut(s)	714, 1155
BstKTI	GATC	3 cut(s)	355, 600, 888
BstMAI	GTCTC	3 cut(s)	239, 609, 847
BstMBI	GATC	3 cut(s)	352, 597, 885
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 1080, 1159
BstNI	CCWGG	2 cut(s)	245, 1029
BstSCI	CCNGG	4 cut(s)	243, 642, 868, 1027
BstUI	CGCG	2 cut(s)	663, 1074
BstV1I	GCAGC	4 cut(s)	326, 329, 394, 962
BstX2I	RGATCY	1 cut(s)	885
BstYI	RGATCY	1 cut(s)	885
BsuRI	GGCC	4 cut(s)	263, 403, 437, 1162
BtgI	CCRYGG	2 cut(s)	309, 788
BtgZI	GCGATG	2 cut(s)	972, 1055
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	985
BtsIMutI	CAGTG	2 cut(s)	896, 985
BtuMI	TCGCGA	1 cut(s)	1074
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	2 cut(s)	714, 1155
Cfr13I	GGNCC	4 cut(s)	401, 435, 471, 1066
CpoI	CGGWCCG	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	573, 1021
CspI	CGGWCCG	1 cut(s)	471
CviAII	CATG	7 cut(s)	81, 310, 431, 601, 789, 839, 857
CviQI	GTAC	2 cut(s)	573, 1021
DdeI	CTNAG	5 cut(s)	45, 95, 648, 800, 946
DpnI	GATC	3 cut(s)	354, 599, 887
DpnII	GATC	3 cut(s)	352, 597, 885
EaeI	YGGCCR	1 cut(s)	1160
EciI	GGCGGA	1 cut(s)	778
Eco130I	CCWWGG	3 cut(s)	264, 309, 788
Eco47I	GGWCC	2 cut(s)	471, 1066
Eco47III	AGCGCT	1 cut(s)	1154
EcoO109I	RGGNCCY	2 cut(s)	401, 435
EcoRII	CCWGG	2 cut(s)	243, 1027
EcoT14I	CCWWGG	3 cut(s)	264, 309, 788
ErhI	CCWWGG	3 cut(s)	264, 309, 788
FaeI	CATG	7 cut(s)	84, 313, 434, 604, 792, 842, 860
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	7 cut(s)	80, 309, 430, 600, 788, 838, 856
FauNDI	CATATG	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	315, 343, 408, 807, 976
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	315, 343, 408, 807, 976
FspBI	CTAG	3 cut(s)	231, 507, 570
GlaI	GCGC	2 cut(s)	713, 1154
GluI	GCNGC	5 cut(s)	315, 343, 408, 807, 976
GsuI	CTGGAG	3 cut(s)	534, 795, 1028
HaeII	RGCGCY	1 cut(s)	1156
HaeIII	GGCC	4 cut(s)	263, 403, 437, 1162
HapII	CCGG	2 cut(s)	644, 870
HhaI	GCGC	2 cut(s)	714, 1155
Hin1II	CATG	7 cut(s)	84, 313, 434, 604, 792, 842, 860
Hin6I	GCGC	2 cut(s)	712, 1153
HinP1I	GCGC	2 cut(s)	712, 1153
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	5 cut(s)	450, 494, 593, 719, 1110
HpaII	CCGG	2 cut(s)	644, 870
HphI	GGTGA	5 cut(s)	50, 163, 205, 744, 884
Hpy166II	GTNNAC	3 cut(s)	392, 854, 1023
Hpy188I	TCNGA	5 cut(s)	98, 455, 471, 847, 1115
Hpy188III	TCNNGA	5 cut(s)	278, 441, 620, 1035, 1073
Hpy8I	GTNNAC	3 cut(s)	392, 854, 1023
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	4 cut(s)	61, 559, 1057, 1073
HpyCH4III	ACNGT	2 cut(s)	671, 920
HpyCH4V	TGCA	8 cut(s)	273, 345, 430, 517, 704, 990, 1106, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 1080, 1159
HpyF3I	CTNAG	5 cut(s)	45, 95, 648, 800, 946
Hsp92II	CATG	7 cut(s)	84, 313, 434, 604, 792, 842, 860
HspAI	GCGC	2 cut(s)	712, 1153
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	352, 597, 885
LmnI	GCTCC	2 cut(s)	311, 814
Lsp1109I	GCAGC	4 cut(s)	326, 329, 394, 962
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	3 cut(s)	231, 507, 570
MaeIII	GTNAC	3 cut(s)	193, 941, 983
MalI	GATC	3 cut(s)	354, 599, 887
MbiI	CCGCTC	1 cut(s)	806
MboI	GATC	3 cut(s)	352, 597, 885
MboII	GAAGA	2 cut(s)	909, 1088
MflI	RGATCY	1 cut(s)	885
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	5 cut(s)	179, 457, 542, 908, 1137
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	187
MseI	TTAA	4 cut(s)	101, 131, 545, 863
MslI	CAYNNNNRTG	1 cut(s)	990
MspI	CCGG	2 cut(s)	644, 870
MspR9I	CCNGG	4 cut(s)	245, 644, 870, 1029
Mva1269I	GAATGC	2 cut(s)	273, 517
MvaI	CCWGG	2 cut(s)	245, 1029
MvnI	CGCG	2 cut(s)	663, 1074
MwoI	GCNNNNNNNGC	3 cut(s)	323, 1080, 1159
NciI	CCSGG	2 cut(s)	644, 870
NcoI	CCATGG	2 cut(s)	309, 788
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	3 cut(s)	352, 597, 885
NlaIII	CATG	7 cut(s)	84, 313, 434, 604, 792, 842, 860
NlaIV	GGNNCC	5 cut(s)	368, 436, 641, 810, 1033
NmuCI	GTSAC	3 cut(s)	193, 941, 983
NruI	TCGCGA	1 cut(s)	1074
PcsI	WCGNNNNNNNCGW	1 cut(s)	593
PctI	GAATGC	2 cut(s)	273, 517
PfeI	GAWTC	4 cut(s)	450, 593, 719, 1110
PflMI	CCANNNNNTGG	1 cut(s)	1174
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	5 cut(s)	316, 344, 409, 808, 977
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PshBI	ATTAAT	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	243, 1027
PspGI	CCWGG	2 cut(s)	243, 1027
PspN4I	GGNNCC	5 cut(s)	368, 436, 641, 810, 1033
PspPI	GGNCC	4 cut(s)	401, 435, 471, 1066
PsuI	RGATCY	1 cut(s)	885
RruI	TCGCGA	1 cut(s)	1074
RsaI	GTAC	2 cut(s)	574, 1022
RsaNI	GTAC	2 cut(s)	573, 1021
RseI	CAYNNNNRTG	1 cut(s)	990
Rsr2I	CGGWCCG	1 cut(s)	471
RsrII	CGGWCCG	1 cut(s)	471
SalI	GTCGAC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	101, 131, 545, 863
SatI	GCNGC	5 cut(s)	315, 343, 408, 807, 976
Sau3AI	GATC	3 cut(s)	352, 597, 885
Sau96I	GGNCC	4 cut(s)	401, 435, 471, 1066
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	4 cut(s)	245, 644, 870, 1029
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	8 cut(s)	176, 219, 344, 487, 654, 749, 757, 1148
SfaNI	GCATC	1 cut(s)	691
SinI	GGWCC	2 cut(s)	471, 1066
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	4 cut(s)	110, 278, 439, 500
SmoI	CTYRAG	4 cut(s)	110, 278, 439, 500
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	5 cut(s)	179, 457, 542, 908, 1137
SsiI	CCGC	3 cut(s)	661, 763, 806
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	3 cut(s)	231, 507, 570
StyD4I	CCNGG	4 cut(s)	243, 642, 868, 1027
StyI	CCWWGG	3 cut(s)	264, 309, 788
TaaI	ACNGT	2 cut(s)	671, 920
TaqI	TCGA	4 cut(s)	391, 591, 596, 722
TaqII	GACCGA	2 cut(s)	488, 577
TasI	AATT	5 cut(s)	179, 457, 542, 908, 1137
TatI	WGTACW	1 cut(s)	1020
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	4 cut(s)	450, 593, 719, 1110
Tru1I	TTAA	4 cut(s)	101, 131, 545, 863
Tru9I	TTAA	4 cut(s)	101, 131, 545, 863
TscAI	CASTG	2 cut(s)	896, 992
TseFI	GTSAC	3 cut(s)	193, 941, 983
TseI	GCWGC	4 cut(s)	314, 342, 407, 975
Tsp45I	GTSAC	3 cut(s)	193, 941, 983
TspDTI	ATGAA	4 cut(s)	22, 389, 827, 1101
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	896, 992
Van91I	CCANNNNNTGG	1 cut(s)	1174
VpaK11BI	GGWCC	2 cut(s)	471, 1066
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	2 cut(s)	179, 908
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	3 cut(s)	231, 507, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.