Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009280

Physical Location & Seq

Genomic Coordinates Reverse (-)

8468720 .. 8471131

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g08060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCTTTACCTCCTTATTTCTTTTGTCTCTTTCATCCTCCTTTCCAAGTCTTTCACTCACCACAAGCCAATGTTACAGACATGGGAGGATAACATCAGATTAATCTCACTCAAGTTTTGGAGTGGATCTTCAAGTTTTCTCCAGAAAAACTGGATTTCACTCCAACCCATCACCTCCAAATTAAAAAAGATGGTGACTTCTGGTTCAAATGTGGAGGGGCAGAGAGAGGAGAGAGAAACTAGTCTCTCTCTCCTGGATTTGCCCGACTTGGCCTTGGGCTGCATTCTTGAGAAGCTTCCCCCATCTGGGTTGTGCTCCATGGCAGCAGTTTGTTCTTCTCTAAGGGAGAGCTGCAGAAGTGATCACTTGTGGGACAACCATATGAAGCACAAATGGGGTACACTTATTGGGCCTGCTGCTTACAGACAATGGCAACTGCATGTGGCCTCAAGAAATAGAATCAGACATTACTGTCTCAAGACCAAGAAAAAAGGTCTAATGGAGTCCCTTGCGGCTATCATTTTGCCTTCCACATGGACTACTCTGCCACAATCAGTAACTTGTGTGTGTAATTGTAAGGTGAAGGCTAGCAGTCGTAGTTTACCAGTCCATTCGATCATGTCTCTGTATCTCTCTCTCGAAAGTGGCAAGTTCTGGTTCCCGGCTCAGGTCTACAACCGCGAGCATGGTAATCTAGGGTTTCTGCTGTCTTGTTATGATGCACAACTGCGCTATGATTCGTGGACAAACACATTTCAAGCACGGTATTCACCTCATGGGCGGAGGGTAGTAGAGGAAAATATACCATGGGATAGATTAAGAGCGGCTCCAGTTGATACTCCTCCTTACAAACTTCATGTTTCTGATTGTTTACACGACTTAAAACCCGGTGATCATATTGAGATCCAGTGGAGAAGAAACAATGAATTTCCTTATGGTTGGTGGTATGGTGTCATTGGTCACTTAGAGTTGTGCAATGGGAATGTGAATCACTGCCGTTGTCACTACAATGATATAGTAGTGCTGGAGTTCCATCATTACACTCCTGGATCCCGGTGGAGACAAATGACGATAAACAGGAAGGACCATCGAGAAGAAGGCAATGAAGCAGACGGCTTCTATGGAGGAATCCGAAAGCTTTACAACGATGAGGAAATTGCAAGGTGGAAGCGTTTATGGCCGAGCCAAGTTCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

400

Amino Acids

46.39

Weight (kDa)

9.01

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41170 AT2G41170 AT2G41170
fragaria_vesca	FvH4_2g14090 FvH4_2g14090
malus_domestica	MD12G1096100.v1.1 MD14G1089800.v1.1
prunus_persica	Prupe.7G034300_v2.0.a1
pyrus_communis	pycom12g08510 pycom14g08060
rosa_chinensis	RchiOBHm_Chr6g0276171
rosa_laevigata	RLG00000013412
rosa_multiflora	Rmu_ssc0000201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192510
rosa_rugosa	Rorug06G0098600 Rorug06G0098700 Rorug06G0098800
rosa_samantha	Rh6AG210400 Rh6BG214600 Rh6CG217300 Rh6DG206900
rosa_wichuraiana	Rw6G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	471
AccB7I	CCANNNNNTGG	1 cut(s)	1192
AccBSI	CCGCTC	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	1 cut(s)	681
AciI	CCGC	4 cut(s)	512, 679, 781, 824
AclWI	GGATC	4 cut(s)	133, 898, 1044, 1057
AcoI	YGGCCR	1 cut(s)	1178
AcsI	RAATTY	1 cut(s)	926
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
AgsI	TTSAA	3 cut(s)	132, 207, 758
AhlI	ACTAGT	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	252, 1045
AluBI	AGCT	3 cut(s)	295, 351, 1138
AluI	AGCT	3 cut(s)	295, 351, 1138
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
AlwI	GGATC	4 cut(s)	133, 898, 1044, 1057
AoxI	GGCC	4 cut(s)	270, 410, 444, 1178
ApeKI	GCWGC	4 cut(s)	279, 323, 351, 416
ApoI	RAATTY	1 cut(s)	926
AseI	ATTAAT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	2 cut(s)	410, 1084
AsuC2I	CCSGG	3 cut(s)	662, 888, 1054
AsuHPI	GGTGA	6 cut(s)	50, 163, 205, 592, 762, 902
AsuNHI	GCTAGC	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	1084
BamHI	GGATCC	1 cut(s)	1049
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	4 cut(s)	266, 335, 338, 403
BccI	CCATC	5 cut(s)	176, 184, 310, 1041, 1095
BceAI	ACGGC	2 cut(s)	981, 1129
BciT130I	CCWGG	2 cut(s)	254, 1047
BclI	TGATCA	2 cut(s)	361, 892
BcnI	CCSGG	3 cut(s)	662, 888, 1054
BcoDI	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	3 cut(s)	240, 588, 695
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
BlsI	GCNGC	6 cut(s)	281, 325, 353, 418, 514, 826
Bme1390I	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
Bme18I	GGWCC	1 cut(s)	1084
BmgT120I	GGNCC	2 cut(s)	410, 1084
BmiI	GGNNCC	3 cut(s)	659, 828, 1051
BmrFI	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
BmsI	GCATC	1 cut(s)	709
BmtI	GCTAGC	1 cut(s)	591
BpmI	CTGGAG	3 cut(s)	125, 813, 1046
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	4 cut(s)	95, 308, 433, 461
BpuMI	CCSGG	3 cut(s)	662, 888, 1054
BsaJI	CCNNGG	3 cut(s)	273, 318, 806
Bsc4I	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
Bse1I	ACTGG	4 cut(s)	155, 605, 830, 907
Bse3DI	GCAATG	2 cut(s)	982, 1108
BseBI	CCWGG	2 cut(s)	254, 1047
BseDI	CCNNGG	3 cut(s)	273, 318, 806
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
BseMI	GCAATG	2 cut(s)	982, 1108
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	4 cut(s)	155, 605, 830, 907
BseRI	GAGGAG	2 cut(s)	242, 831
BseXI	GCAGC	4 cut(s)	266, 335, 338, 403
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	4 cut(s)	272, 412, 446, 1180
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	662, 888, 1054
BslFI	GGGAC	2 cut(s)	386, 490
BslI	CCNNNNNNNGG	4 cut(s)	305, 306, 667, 1192
BsmAI	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
BsmFI	GGGAC	2 cut(s)	386, 490
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	272, 412, 446, 1180
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
Bsp19I	CCATGG	2 cut(s)	318, 806
BspACI	CCGC	4 cut(s)	512, 679, 781, 824
BspANI	GGCC	4 cut(s)	272, 412, 446, 1180
BspCNI	CTCAG	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	659, 828, 1051
BspMAI	CTGCAG	1 cut(s)	356
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	4 cut(s)	133, 898, 1044, 1057
BsrBI	CCGCTC	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	982, 1108
BsrI	ACTGG	4 cut(s)	155, 605, 830, 907
BssECI	CCNNGG	3 cut(s)	273, 318, 806
BssMI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
BssT1I	CCWWGG	3 cut(s)	273, 318, 806
Bst2UI	CCWGG	2 cut(s)	254, 1047
Bst4CI	ACNGT	2 cut(s)	473, 765
BstC8I	GCNNGC	3 cut(s)	414, 589, 683
BstDEI	CTNAG	3 cut(s)	341, 666, 964
BstDSI	CCRYGG	2 cut(s)	318, 806
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	6 cut(s)	128, 364, 618, 895, 906, 1052
BstMAI	GTCTC	5 cut(s)	31, 248, 479, 627, 1054
BstMBI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
BstMWI	GCNNNNNNNGC	1 cut(s)	1177
BstNI	CCWGG	2 cut(s)	254, 1047
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	5 cut(s)	252, 660, 886, 1045, 1052
BstSFI	CTRYAG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	4 cut(s)	266, 335, 338, 403
BstX2I	RGATCY	3 cut(s)	125, 903, 1049
BstYI	RGATCY	3 cut(s)	125, 903, 1049
BsuRI	GGCC	4 cut(s)	272, 412, 446, 1180
BtgI	CCRYGG	2 cut(s)	318, 806
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	991
BtsIMutI	CAGTG	2 cut(s)	914, 991
Cac8I	GCNNGC	3 cut(s)	414, 589, 683
CfoI	GCGC	1 cut(s)	732
Cfr13I	GGNCC	2 cut(s)	410, 1084
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	9 cut(s)	81, 319, 440, 534, 619, 686, 776, 807, 857
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	3 cut(s)	341, 666, 964
DpnI	GATC	6 cut(s)	127, 363, 617, 894, 905, 1051
DpnII	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
DrdI	GACNNNNNNGTC	1 cut(s)	471
DseDI	GACNNNNNNGTC	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	1178
EciI	GGCGGA	1 cut(s)	796
Eco130I	CCWWGG	3 cut(s)	273, 318, 806
Eco47I	GGWCC	1 cut(s)	1084
EcoRII	CCWGG	2 cut(s)	252, 1045
EcoT14I	CCWWGG	3 cut(s)	273, 318, 806
ErhI	CCWWGG	3 cut(s)	273, 318, 806
FaeI	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
FaqI	GGGAC	2 cut(s)	386, 490
FatI	CATG	9 cut(s)	80, 318, 439, 533, 618, 685, 775, 806, 856
FauNDI	CATATG	1 cut(s)	381
FbaI	TGATCA	2 cut(s)	361, 892
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
FspBI	CTAG	3 cut(s)	240, 588, 695
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
GsuI	CTGGAG	3 cut(s)	125, 813, 1046
HaeIII	GGCC	4 cut(s)	272, 412, 446, 1180
HapII	CCGG	3 cut(s)	662, 888, 1054
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HindIII	AAGCTT	2 cut(s)	293, 1136
HinfI	GANTC	5 cut(s)	459, 503, 737, 988, 1128
HpaII	CCGG	3 cut(s)	662, 888, 1054
HphI	GGTGA	6 cut(s)	50, 163, 205, 592, 762, 902
Hpy166II	GTNNAC	5 cut(s)	401, 602, 673, 744, 872
Hpy188I	TCNGA	4 cut(s)	98, 464, 865, 1133
Hpy188III	TCNNGA	7 cut(s)	142, 287, 450, 478, 638, 1091, 1193
Hpy8I	GTNNAC	5 cut(s)	401, 602, 673, 744, 872
HpyAV	CCTTC	4 cut(s)	537, 577, 1075, 1091
HpyCH4III	ACNGT	2 cut(s)	473, 765
HpyCH4V	TGCA	6 cut(s)	282, 354, 439, 722, 975, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1177
HpyF3I	CTNAG	3 cut(s)	341, 666, 964
Hsp92II	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
HspAI	GCGC	1 cut(s)	730
Ksp22I	TGATCA	2 cut(s)	361, 892
Kzo9I	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
LmnI	GCTCC	2 cut(s)	320, 832
Lsp1109I	GCAGC	4 cut(s)	266, 335, 338, 403
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	3 cut(s)	240, 588, 695
MaeIII	GTNAC	5 cut(s)	72, 193, 556, 959, 1001
MalI	GATC	6 cut(s)	127, 363, 617, 894, 905, 1051
MbiI	CCGCTC	1 cut(s)	824
MboI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
MboII	GAAGA	4 cut(s)	120, 327, 927, 1106
MflI	RGATCY	3 cut(s)	125, 903, 1049
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	4 cut(s)	179, 571, 926, 1155
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	187
MseI	TTAA	4 cut(s)	101, 182, 818, 881
MslI	CAYNNNNRTG	1 cut(s)	1008
MspI	CCGG	3 cut(s)	662, 888, 1054
MspR9I	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	254, 1047
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	1 cut(s)	1177
NciI	CCSGG	3 cut(s)	662, 888, 1054
NcoI	CCATGG	2 cut(s)	318, 806
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	9 cut(s)	84, 322, 443, 537, 622, 689, 779, 810, 860
NlaIV	GGNNCC	3 cut(s)	659, 828, 1051
NmuCI	GTSAC	3 cut(s)	193, 959, 1001
NspI	RCATGY	1 cut(s)	443
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	4 cut(s)	459, 737, 988, 1128
PflMI	CCANNNNNTGG	1 cut(s)	1192
PfoI	TCCNGGA	2 cut(s)	252, 1045
PkrI	GCNGC	6 cut(s)	281, 325, 353, 418, 514, 826
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	252, 1045
PspGI	CCWGG	2 cut(s)	252, 1045
PspN4I	GGNNCC	3 cut(s)	659, 828, 1051
PspPI	GGNCC	2 cut(s)	410, 1084
PstI	CTGCAG	1 cut(s)	356
PsuI	RGATCY	3 cut(s)	125, 903, 1049
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	1008
SaqAI	TTAA	4 cut(s)	101, 182, 818, 881
SatI	GCNGC	6 cut(s)	280, 324, 352, 417, 513, 825
Sau3AI	GATC	6 cut(s)	125, 361, 615, 892, 903, 1049
Sau96I	GGNCC	2 cut(s)	410, 1084
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	5 cut(s)	254, 662, 888, 1047, 1054
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	1 cut(s)	709
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	1084
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	4 cut(s)	110, 287, 448, 476
SmoI	CTYRAG	4 cut(s)	110, 287, 448, 476
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	4 cut(s)	179, 571, 926, 1155
SsiI	CCGC	4 cut(s)	512, 679, 781, 824
SspMI	CTAG	3 cut(s)	240, 588, 695
StyD4I	CCNGG	5 cut(s)	252, 660, 886, 1045, 1052
StyI	CCWWGG	3 cut(s)	273, 318, 806
TaaI	ACNGT	2 cut(s)	473, 765
TaqI	TCGA	3 cut(s)	614, 639, 1090
TasI	AATT	4 cut(s)	179, 571, 926, 1155
TauI	GCSGC	2 cut(s)	515, 827
TfiI	GAWTC	4 cut(s)	459, 737, 988, 1128
Tru1I	TTAA	4 cut(s)	101, 182, 818, 881
Tru9I	TTAA	4 cut(s)	101, 182, 818, 881
TscAI	CASTG	2 cut(s)	914, 998
TseFI	GTSAC	3 cut(s)	193, 959, 1001
TseI	GCWGC	4 cut(s)	279, 323, 351, 416
Tsp45I	GTSAC	3 cut(s)	193, 959, 1001
TspDTI	ATGAA	5 cut(s)	22, 398, 845, 939, 1119
TspRI	CASTG	2 cut(s)	914, 998
Van91I	CCANNNNNTGG	1 cut(s)	1192
VpaK11BI	GGWCC	1 cut(s)	1084
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	3 cut(s)	240, 588, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.