Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009280

Physical Location & Seq

Genomic Coordinates Reverse (-)

31198668 .. 31201181

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTCTATCTCCTAATATCTTGTGTCTCCTTCATTCTTGTTTCCAAGTCCTTCACCAACAAGCAACCATGGCAGCAGGGTAAGCTCAAGTTGTTTTCAATTGAGCCATCAAATTTCCTAGTGTCCTGGTTCCAGAATAGTAGGCTTTATACAGGTTTATTCCAACCCATTGCCTTCCAAGTTAAACAAATGATGGCCAAGTCTTCTAGTTCAAGAGTAGTTGTGGAGAATGTGGATCAGGAACAAGAAGCTGGCCATGTTTCTTTATTGGATTTGCCTGATCTGACATTGGAGTACATTCTTGAAAGGCTTTCCCCATCTGGGTTATGCTGTATGGCTGGAGTTTGTACTTCTATGAGAGATAGGTGTACAAGTGACCATTTTTGGAAGAAGCATATGAAGCAGAAATGGGGTAAACTGATTGGGGCTGCTGCTTATAGAGAATGGGAATTGCAGCATGTGGCTATAGCAAGAAGAAGAAACAGCCAGTCTGATCAAACCAAGAAGAAAAGTGTACTTGACTCCCTTTCTGGGTTTTTACCTTTTTGTTCATGGGTGATCAGACCAAAATCACAAAGTTGCAGGGCGAAGAGTACTAGTGCTACTCCTTTGCCGGTTGATTCCATCATGTCTTTATATCTTTCTCTTGAAAGAGGGGACTTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAACGGTAATGTAGGCTTTATGCTGTCTTGTTATGATGCAAAACTGAGCTATGATTCGGGAACAGACACATTTCAAGCAAGGTATTCACCTTATGGGAGGAGGGCAAATGAGGAACGTATACCGTGGGATAGGCTAAGAGCTGCTCCAGTTGATACTTCCTCACATATGCTTCATGTCTCTGATTGTTTACATGATTTAAAACCCGGTGATCATATTGAAATCCAATGGAGAAGAAGCAAGGAATTCCCTTATGGTTGGTGGTATGGTGTCATTGGCCACTTCGACCTGTGCGATGGGAATGAGAATCACTGCCGTTGTCACTACAATGATATAGTAGTACTGGAGTTCAGTCAATATACCCCTGGCTCGCGATGGAGACAAATGATGATAAACCGAAGAGACCACCGAGAAGAAGGAAACGAGGCAGATGGTTTCTATGGAGGAATTAGAAAGCTTTACAATGCAGAGGAAATTGCAAAATGGAAGCTCCTATGGCCTAACCAAGTCCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

403

Amino Acids

46.65

Weight (kDa)

8.62

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	89 - 131	2.1e-07	F-box domain
F-box-like	PF12937	90 - 132	3.9e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41170 AT2G41170 AT2G41170
fragaria_vesca	FvH4_2g14090 FvH4_2g14090
malus_domestica	MD12G1096100.v1.1 MD14G1089800.v1.1
prunus_persica	Prupe.7G034300_v2.0.a1
pyrus_communis	pycom12g08510 pycom14g08060
rosa_chinensis	RchiOBHm_Chr6g0276171
rosa_laevigata	RLG00000013412
rosa_multiflora	Rmu_ssc0000201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192510
rosa_rugosa	Rorug06G0098600 Rorug06G0098700 Rorug06G0098800
rosa_samantha	Rh6AG210400 Rh6BG214600 Rh6CG217300 Rh6DG206900
rosa_wichuraiana	Rw6G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1201
AccI	GTMKAC	1 cut(s)	811
AccII	CGCG	1 cut(s)	1063
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	3 cut(s)	195, 253, 967
AcsI	RAATTY	2 cut(s)	112, 935
AfaI	GTAC	6 cut(s)	296, 349, 370, 516, 595, 1032
AfiI	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
AgsI	TTSAA	6 cut(s)	99, 213, 305, 650, 767, 911
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	3 cut(s)	125, 1054, 1200
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	7 cut(s)	85, 251, 674, 741, 833, 1147, 1180
AluI	AGCT	7 cut(s)	85, 251, 674, 741, 833, 1147, 1180
Alw26I	GTCTC	4 cut(s)	31, 874, 1063, 1086
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	4 cut(s)	195, 253, 967, 1187
ApeKI	GCWGC	5 cut(s)	73, 428, 431, 454, 833
ApoI	RAATTY	2 cut(s)	112, 935
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	4 cut(s)	46, 568, 771, 911
BalI	TGGCCA	3 cut(s)	197, 255, 969
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	85, 415, 418, 466, 820
BccI	CCATC	7 cut(s)	115, 187, 325, 632, 980, 1059, 1115
BceAI	ACGGC	1 cut(s)	990
BciT130I	CCWGG	3 cut(s)	127, 1056, 1202
BclI	TGATCA	3 cut(s)	493, 558, 901
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	4 cut(s)	31, 874, 1063, 1086
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	3 cut(s)	119, 207, 597
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
BlsI	GCNGC	5 cut(s)	75, 430, 433, 456, 835
BmcAI	AGTACT	2 cut(s)	595, 1032
Bme1390I	CCNGG	4 cut(s)	127, 897, 1056, 1202
BmiI	GGNNCC	2 cut(s)	131, 668
BmrFI	CCNGG	4 cut(s)	127, 897, 1056, 1202
BmsI	GCATC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	3 cut(s)	360, 822, 1055
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	1086
BsaJI	CCNNGG	3 cut(s)	68, 815, 1054
Bsc4I	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	3 cut(s)	487, 839, 1038
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	3 cut(s)	127, 1056, 1202
BseDI	CCNNGG	3 cut(s)	68, 815, 1054
BseLI	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	689, 728
BseNI	ACTGG	3 cut(s)	487, 839, 1038
BseRI	GAGGAG	1 cut(s)	805
BseXI	GCAGC	5 cut(s)	85, 415, 418, 466, 820
BseYI	CCCAGC	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	1063
BshFI	GGCC	4 cut(s)	197, 255, 969, 1189
BsiSI	CCGG	2 cut(s)	614, 897
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	4 cut(s)	321, 531, 676, 1201
BsmAI	GTCTC	4 cut(s)	31, 874, 1063, 1086
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	4 cut(s)	197, 255, 969, 1189
Bso31I	GGTCTC	1 cut(s)	1086
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	235, 280, 493, 558, 901
Bsp19I	CCATGG	1 cut(s)	68
Bsp68I	TCGCGA	1 cut(s)	1063
BspANI	GGCC	4 cut(s)	197, 255, 969, 1189
BspCNI	CTCAG	2 cut(s)	688, 729
BspFNI	CGCG	1 cut(s)	1063
BspLI	GGNNCC	2 cut(s)	131, 668
BspPI	GGATC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	1086
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	487, 839, 1038
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	3 cut(s)	68, 815, 1054
BssMI	GATC	5 cut(s)	235, 280, 493, 558, 901
BssNAI	GTATAC	1 cut(s)	812
BssT1I	CCWWGG	1 cut(s)	68
Bst1107I	GTATAC	1 cut(s)	812
Bst2UI	CCWGG	3 cut(s)	127, 1056, 1202
Bst4CI	ACNGT	3 cut(s)	689, 698, 816
Bst6I	CTCTTC	2 cut(s)	584, 1084
BstAUI	TGTACA	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	253, 1061
BstDEI	CTNAG	3 cut(s)	675, 737, 827
BstDSI	CCRYGG	2 cut(s)	68, 815
BstFNI	CGCG	1 cut(s)	1063
BstKTI	GATC	5 cut(s)	238, 283, 496, 561, 904
BstMAI	GTCTC	4 cut(s)	31, 874, 1063, 1086
BstMBI	GATC	5 cut(s)	235, 280, 493, 558, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 82, 400, 1186
BstNI	CCWGG	3 cut(s)	127, 1056, 1202
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	4 cut(s)	125, 895, 1054, 1200
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	1063
BstV1I	GCAGC	5 cut(s)	85, 415, 418, 466, 820
BstV2I	GAAGAC	1 cut(s)	195
BstZ17I	GTATAC	1 cut(s)	812
BsuRI	GGCC	4 cut(s)	197, 255, 969, 1189
BtgI	CCRYGG	2 cut(s)	68, 815
BtgZI	GCGATG	2 cut(s)	999, 1078
BtsI	GCAGTG	1 cut(s)	1000
BtsIMutI	CAGTG	1 cut(s)	1000
BtuMI	TCGCGA	1 cut(s)	1063
Cac8I	GCNNGC	2 cut(s)	253, 1061
Cfr10I	RCCGGY	1 cut(s)	613
Csp6I	GTAC	6 cut(s)	295, 348, 369, 515, 594, 1031
CviAII	CATG	7 cut(s)	69, 257, 458, 552, 628, 866, 884
CviQI	GTAC	6 cut(s)	295, 348, 369, 515, 594, 1031
DdeI	CTNAG	3 cut(s)	675, 737, 827
DpnI	GATC	5 cut(s)	237, 282, 495, 560, 903
DpnII	GATC	5 cut(s)	235, 280, 493, 558, 901
DraI	TTTAAA	1 cut(s)	891
EaeI	YGGCCR	3 cut(s)	195, 253, 967
Eam1104I	CTCTTC	2 cut(s)	584, 1084
EarI	CTCTTC	2 cut(s)	584, 1084
Eco130I	CCWWGG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	1086
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	3 cut(s)	125, 1054, 1200
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	7 cut(s)	72, 260, 461, 555, 631, 869, 887
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	7 cut(s)	68, 256, 457, 551, 627, 865, 883
FauNDI	CATATG	2 cut(s)	396, 858
FbaI	TGATCA	3 cut(s)	493, 558, 901
FblI	GTMKAC	1 cut(s)	811
Fnu4HI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
Fsp4HI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
FspBI	CTAG	3 cut(s)	119, 207, 597
GluI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	3 cut(s)	360, 822, 1055
HaeIII	GGCC	4 cut(s)	197, 255, 969, 1189
HapII	CCGG	2 cut(s)	614, 897
Hin1II	CATG	7 cut(s)	72, 260, 461, 555, 631, 869, 887
HindIII	AAGCTT	1 cut(s)	1145
HinfI	GANTC	4 cut(s)	521, 620, 746, 997
HpaII	CCGG	2 cut(s)	614, 897
HphI	GGTGA	4 cut(s)	46, 568, 771, 911
Hpy166II	GTNNAC	5 cut(s)	369, 416, 515, 812, 881
Hpy188I	TCNGA	4 cut(s)	285, 493, 563, 874
Hpy188III	TCNNGA	7 cut(s)	133, 213, 239, 302, 647, 750, 1062
Hpy8I	GTNNAC	5 cut(s)	369, 416, 515, 812, 881
HpyAV	CCTTC	4 cut(s)	40, 61, 184, 1100
HpyCH4III	ACNGT	3 cut(s)	689, 698, 816
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	5 cut(s)	454, 582, 731, 1157, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 82, 400, 1186
HpyF3I	CTNAG	3 cut(s)	675, 737, 827
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	7 cut(s)	72, 260, 461, 555, 631, 869, 887
Ksp22I	TGATCA	3 cut(s)	493, 558, 901
Kzo9I	GATC	5 cut(s)	235, 280, 493, 558, 901
LmnI	GCTCC	2 cut(s)	841, 1185
Lsp1109I	GCAGC	5 cut(s)	85, 415, 418, 466, 820
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	3 cut(s)	119, 207, 597
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	2 cut(s)	374, 1010
MalI	GATC	5 cut(s)	237, 282, 495, 560, 903
MboI	GATC	5 cut(s)	235, 280, 493, 558, 901
MboII	GAAGA	9 cut(s)	195, 400, 486, 489, 517, 601, 936, 1101, 1115
MfeI	CAATTG	1 cut(s)	99
MlsI	TGGCCA	3 cut(s)	197, 255, 969
MluCI	AATT	6 cut(s)	99, 112, 449, 935, 1137, 1164
MluNI	TGGCCA	3 cut(s)	197, 255, 969
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	8 cut(s)	647, 783, 786, 796, 862, 1108, 1127, 1153
Mox20I	TGGCCA	3 cut(s)	197, 255, 969
MscI	TGGCCA	3 cut(s)	197, 255, 969
MseI	TTAA	2 cut(s)	183, 890
MslI	CAYNNNNRTG	1 cut(s)	1017
Msp20I	TGGCCA	3 cut(s)	197, 255, 969
MspI	CCGG	2 cut(s)	614, 897
MspR9I	CCNGG	4 cut(s)	127, 897, 1056, 1202
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	3 cut(s)	127, 1056, 1202
MvnI	CGCG	1 cut(s)	1063
MwoI	GCNNNNNNNGC	4 cut(s)	70, 82, 400, 1186
NciI	CCSGG	1 cut(s)	897
NcoI	CCATGG	1 cut(s)	68
NdeI	CATATG	2 cut(s)	396, 858
NdeII	GATC	5 cut(s)	235, 280, 493, 558, 901
NlaIII	CATG	7 cut(s)	72, 260, 461, 555, 631, 869, 887
NlaIV	GGNNCC	2 cut(s)	131, 668
NmuCI	GTSAC	2 cut(s)	374, 1010
NruI	TCGCGA	1 cut(s)	1063
NspI	RCATGY	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PfeI	GAWTC	3 cut(s)	620, 746, 997
PflMI	CCANNNNNTGG	1 cut(s)	1201
PfoI	TCCNGGA	1 cut(s)	1200
PkrI	GCNGC	5 cut(s)	75, 430, 433, 456, 835
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp6I	CCWGG	3 cut(s)	125, 1054, 1200
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	3 cut(s)	125, 1054, 1200
PspN4I	GGNNCC	2 cut(s)	131, 668
RruI	TCGCGA	1 cut(s)	1063
RsaI	GTAC	6 cut(s)	296, 349, 370, 516, 595, 1032
RsaNI	GTAC	6 cut(s)	295, 348, 369, 515, 594, 1031
RseI	CAYNNNNRTG	1 cut(s)	1017
SaqAI	TTAA	2 cut(s)	183, 890
SatI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
Sau3AI	GATC	5 cut(s)	235, 280, 493, 558, 901
ScaI	AGTACT	2 cut(s)	595, 1032
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	4 cut(s)	127, 897, 1056, 1202
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	1017
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	6 cut(s)	99, 112, 449, 935, 1137, 1164
SspMI	CTAG	3 cut(s)	119, 207, 597
StyD4I	CCNGG	4 cut(s)	125, 895, 1054, 1200
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	689, 698, 816
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	1 cut(s)	975
TasI	AATT	6 cut(s)	99, 112, 449, 935, 1137, 1164
TatI	WGTACW	6 cut(s)	294, 347, 368, 514, 593, 1030
TfiI	GAWTC	3 cut(s)	620, 746, 997
Tru1I	TTAA	2 cut(s)	183, 890
Tru9I	TTAA	2 cut(s)	183, 890
TscAI	CASTG	1 cut(s)	1007
TseFI	GTSAC	2 cut(s)	374, 1010
TseI	GCWGC	5 cut(s)	73, 428, 431, 454, 833
Tsp45I	GTSAC	2 cut(s)	374, 1010
TspDTI	ATGAA	4 cut(s)	22, 413, 540, 854
TspRI	CASTG	1 cut(s)	1007
Van91I	CCANNNNNTGG	1 cut(s)	1201
XapI	RAATTY	2 cut(s)	112, 935
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	811
XspI	CTAG	3 cut(s)	119, 207, 597
ZrmI	AGTACT	2 cut(s)	595, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.