Rorug06G0098600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009280
Physical Location & Seq
Reverse (-)
13167139 .. 13167754
616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0098600.1

Sequence Viewer

Length: 519 bp
ATGCTCGGACGTTCCAAGGAGATGACGAACAACTGCAAATGCCGCCAATCACCTGACGTAGACGCGAATAATTACTCAATACCGACTCATAATAAGACCACCGTTGCTCAAAGGAAACACTTCAAGATCCTTGCTTGGAACTGCCGAGGGCTGAATAATATAGAGACCCAGGATGCACTCGTCGACTTAGTCAGGAGACAAAACCCTAGTCTGGTGTTTCTTTCTGAGACGTTGGCCTCACTGGATCTGTTGACGACTGTTCGCCCTAAGATTGGCTTTGATGGAGTTGTGTGTGCTCCCAAGGATGATGATTGTCGTGGACTGGCTTTGTTTTGTCTCAAAGAAACTCCAGTTCATTTTCGAACGTATTCTCCTAATCATATTGATGCAGAGGTAGGGGTTGTAGGATCTGTAGGTGTTTTTCGCTTTACTGGCCTTTATAGAGTCGCTACTGCAGCTAATCGTACCACTACTTGGGACCTCCTTCAGTTGTTAGCCTCCCAACTCCATCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

172

Amino Acids

19.18

Weight (kDa)

8.81

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 474
AccI GTMKAC 2 cut(s) 60, 183
AccII CGCG 1 cut(s) 65
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 121, 252, 415
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 3 cut(s) 211, 272, 474
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 1 cut(s) 495
AloI GAACNNNNNNTCC 2 cut(s) 355, 387
AluBI AGCT 1 cut(s) 458
AluI AGCT 1 cut(s) 458
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 4 cut(s) 158, 190, 221, 341
AlwI GGATC 3 cut(s) 121, 252, 415
AoxI GGCC 2 cut(s) 234, 433
ApeKI GCWGC 1 cut(s) 455
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
Asp700I GAANNNNTTC 2 cut(s) 119, 367
AspS9I GGNCC 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 42
AsuII TTCGAA 1 cut(s) 361
AvaII GGWCC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 467
BccI CCATC 2 cut(s) 275, 516
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 4 cut(s) 158, 190, 221, 341
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 2 cut(s) 411, 453
BisI GCNGC 2 cut(s) 43, 456
BlsI GCNGC 2 cut(s) 44, 457
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 163, 376
BpmI CTGGAG 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 4 cut(s) 15, 145, 168, 300
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 272, 474
Bse1I ACTGG 4 cut(s) 246, 327, 350, 436
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 4 cut(s) 15, 145, 168, 300
BseGI GGATG 2 cut(s) 178, 310
BseLI CCNNNNNNNGG 3 cut(s) 211, 272, 474
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 4 cut(s) 246, 327, 350, 436
BseXI GCAGC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 236, 435
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 211, 272, 474
BsmAI GTCTC 4 cut(s) 158, 190, 221, 341
BsmBI CGTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 2 cut(s) 236, 435
Bso31I GGTCTC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 126, 244, 407
BspACI CCGC 1 cut(s) 43
BspANI GGCC 2 cut(s) 236, 435
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 479
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 3 cut(s) 121, 252, 415
BspT104I TTCGAA 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 4 cut(s) 246, 327, 350, 436
BssECI CCNNGG 4 cut(s) 15, 145, 168, 300
BssMI GATC 3 cut(s) 126, 244, 407
BssT1I CCWWGG 2 cut(s) 15, 300
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 103, 259
BstBI TTCGAA 1 cut(s) 361
BstDEI CTNAG 4 cut(s) 187, 225, 267, 516
BstF5I GGATG 2 cut(s) 178, 310
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 129, 247, 410
BstMAI GTCTC 4 cut(s) 158, 190, 221, 341
BstMBI GATC 3 cut(s) 126, 244, 407
BstMWI GCNNNNNNNGC 3 cut(s) 42, 432, 455
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 2 cut(s) 411, 453
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 467
BstX2I RGATCY 3 cut(s) 126, 244, 407
BstYI RGATCY 3 cut(s) 126, 244, 407
BsuRI GGCC 2 cut(s) 236, 435
BtsCI GGATG 2 cut(s) 178, 310
BtsIMutI CAGTG 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 465
CviJI RGCY 7 cut(s) 151, 236, 276, 326, 435, 458, 497
CviKI_1 RGCY 7 cut(s) 151, 236, 276, 326, 435, 458, 497
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 4 cut(s) 187, 225, 267, 516
DpnI GATC 3 cut(s) 128, 246, 409
DpnII GATC 3 cut(s) 126, 244, 407
Eco130I CCWWGG 2 cut(s) 15, 300
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 15, 300
ErhI CCWWGG 2 cut(s) 15, 300
Esp3I CGTCTC 1 cut(s) 221
FaiI YATR 4 cut(s) 90, 161, 381, 441
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 491
FblI GTMKAC 2 cut(s) 60, 183
Fnu4HI GCNGC 2 cut(s) 43, 456
FokI GGATG 2 cut(s) 185, 317
Fsp4HI GCNGC 2 cut(s) 43, 456
FspBI CTAG 1 cut(s) 207
GluI GCNGC 2 cut(s) 43, 456
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 2 cut(s) 236, 435
HgaI GACGC 1 cut(s) 71
HincII GTYRAC 2 cut(s) 184, 252
HindII GTYRAC 2 cut(s) 184, 252
HinfI GANTC 2 cut(s) 85, 444
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 4 cut(s) 61, 184, 252, 320
Hpy188I TCNGA 2 cut(s) 8, 226
Hpy188III TCNNGA 2 cut(s) 124, 193
Hpy8I GTNNAC 4 cut(s) 61, 184, 252, 320
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 2 cut(s) 103, 259
HpyCH4IV ACGT 4 cut(s) 10, 57, 230, 365
HpyCH4V TGCA 4 cut(s) 36, 176, 389, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 432, 455
HpyF3I CTNAG 4 cut(s) 187, 225, 267, 516
HpySE526I ACGT 4 cut(s) 10, 57, 230, 365
Kzo9I GATC 3 cut(s) 126, 244, 407
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 9 cut(s) 66, 155, 178, 182, 197, 227, 308, 363, 417
Lsp1109I GCAGC 1 cut(s) 467
LweI GCATC 2 cut(s) 163, 376
MaeI CTAG 1 cut(s) 207
MaeII ACGT 4 cut(s) 10, 57, 230, 365
MalI GATC 3 cut(s) 128, 246, 409
MboI GATC 3 cut(s) 126, 244, 407
MboII GAAGA 1 cut(s) 503
MflI RGATCY 3 cut(s) 126, 244, 407
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 1 cut(s) 70
MlyI GAGTC 2 cut(s) 79, 453
MnlI CCTC 5 cut(s) 140, 247, 385, 491, 508
MroXI GAANNNNTTC 2 cut(s) 119, 367
MslI CAYNNNNRTG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 3 cut(s) 42, 432, 455
NdeII GATC 3 cut(s) 126, 244, 407
NlaIV GGNNCC 1 cut(s) 479
NmeAIII GCCGAG 1 cut(s) 170
NspV TTCGAA 1 cut(s) 361
PdmI GAANNNNTTC 2 cut(s) 119, 367
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 474
PkrI GCNGC 2 cut(s) 44, 457
PleI GAGTC 2 cut(s) 79, 452
PpsI GAGTC 2 cut(s) 79, 452
PpuMI RGGWCCY 1 cut(s) 478
Psp5II RGGWCCY 1 cut(s) 478
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 1 cut(s) 478
PspPPI RGGWCCY 1 cut(s) 478
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 3 cut(s) 126, 244, 407
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 1 cut(s) 384
SalI GTCGAC 1 cut(s) 182
SatI GCNGC 2 cut(s) 43, 456
Sau3AI GATC 3 cut(s) 126, 244, 407
Sau96I GGNCC 1 cut(s) 478
SchI GAGTC 2 cut(s) 79, 453
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 298
SetI ASST 9 cut(s) 13, 55, 60, 233, 368, 396, 418, 460, 483
SfaNI GCATC 2 cut(s) 163, 376
SfcI CTRYAG 2 cut(s) 411, 453
SfuI TTCGAA 1 cut(s) 361
SinI GGWCC 1 cut(s) 478
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 1 cut(s) 70
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 2 cut(s) 15, 300
TaaI ACNGT 2 cut(s) 103, 259
TaiI ACGT 4 cut(s) 13, 60, 233, 368
TaqI TCGA 2 cut(s) 183, 361
TasI AATT 1 cut(s) 70
TauI GCSGC 1 cut(s) 45
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 1 cut(s) 246
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 478
XmiI GTMKAC 2 cut(s) 60, 183
XmnI GAANNNNTTC 2 cut(s) 119, 367
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.