Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009280

Physical Location & Seq

Genomic Coordinates Forward (+)

40499895 .. 40504818

Gene Structure 4924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG214600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCTCTATCTCCTAATATCTTGTGTCTCCTTCATCCTTGTTTCCAAGTCCTTCACCAACAAGCAACCATGGCAGCAGGGTAAGCTCAAGTTGTTTTCAATTGGGCCATCAAATTTCCTAGTGTCCTGGTTCCAGAACAGTAGGCTTTATACAGGTTTATTCCAACCCATTACCTTCCAAGTTAAACAAATGATGGCCAAGTCTTCTAGTTCAAGATTAGTTGTGGAGAATGTGGATCAGGAACAACAAGCTGGCCATGTTTCTTTATTGGATTTGCCTGATTTGACATTGGAGTGCATTCTTGAAAGGCTTTCTCCATCTGGGTTATGCAATATGGCTGGAGTTTGTACTTCTATGAGGGATAGGTGTACAAGTGACCATTTTTGGAAGAAGCATATGAAGCAGAAATGGGGTAAACTGATTCGGGCTGCTGCTTATAGAGAATGGGAATTGCAGCATATGGCTATAGCAAGAAGAAGAAACAGCCAGTCTGATCAAACCAAGAAGAAAAGTGTACTTGACTCCCTTTCTGGGTTTTTACCTTTTTGTTCATGGGTGATCAGACCAAAATCACAAAGTTTCAGGGTGAAGAGTACTGGTGCTACTACTTTGCCGGTTGATTCCATCATGTCCTTGTATCTTTCTCTTGAAAGAGGGGACTTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAACGGTAATGTAGGCTTTATGCTGTCTTGTTATGATGCACAACTGAGCTATGATTCGGCAACAGACACATTTCAAGCAAGGTATTCACCTTATGGGAGGAGGACAAATGAGGAACTTATACCATGGGATAGACTAAGAGCTGCTCCAGTTGATACTCCCTCACATATGCTTCATGTCTCTGATTGTTTACATGACTTAAAACCTGGTGATCATATCGAAATCCAATGGAGAAGAAGCAAGGAATTCCCTTATGGTATATTTCCAAATCCCATCTTCACTGAAAACATCAGATCAAGTAGTAGCATGGGGGTCAATTATTTGTTAAATATTTTCATTCTTCTGCAACTCTTTTTAAGTGCTTCATGCTTAATGGGTGTTAAATGTTTGTCCACCAGGCAATTAATCTATATATGTTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

371

Amino Acids

42.65

Weight (kDa)

9.19

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	89 - 131	3.2e-08	F-box domain
F-box-like	PF12937	90 - 132	1.7e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41170 AT2G41170 AT2G41170
fragaria_vesca	FvH4_2g14090 FvH4_2g14090
malus_domestica	MD12G1096100.v1.1 MD14G1089800.v1.1
prunus_persica	Prupe.7G034300_v2.0.a1
pyrus_communis	pycom12g08510 pycom14g08060
rosa_chinensis	RchiOBHm_Chr6g0276171
rosa_laevigata	RLG00000013412
rosa_multiflora	Rmu_ssc0000201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192510
rosa_rugosa	Rorug06G0098600 Rorug06G0098700 Rorug06G0098800
rosa_samantha	Rh6AG210400 Rh6BG214600 Rh6CG217300 Rh6DG206900
rosa_wichuraiana	Rw6G018330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	2 cut(s)	195, 253
AcsI	RAATTY	2 cut(s)	112, 935
AfaI	GTAC	4 cut(s)	349, 370, 516, 595
AfiI	CCNNNNNNNGG	2 cut(s)	531, 676
AgsI	TTSAA	5 cut(s)	99, 213, 305, 650, 767
AjnI	CCWGG	3 cut(s)	125, 895, 1085
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	5 cut(s)	85, 251, 674, 741, 833
AluI	AGCT	5 cut(s)	85, 251, 674, 741, 833
Alw26I	GTCTC	2 cut(s)	31, 874
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	3 cut(s)	104, 195, 253
ApeKI	GCWGC	5 cut(s)	73, 428, 431, 454, 833
ApoI	RAATTY	2 cut(s)	112, 935
AseI	ATTAAT	1 cut(s)	1094
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	5 cut(s)	46, 568, 598, 771, 911
BalI	TGGCCA	2 cut(s)	197, 255
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	85, 415, 418, 466, 820
BccI	CCATC	5 cut(s)	115, 187, 325, 632, 971
BciT130I	CCWGG	3 cut(s)	127, 897, 1087
BclI	TGATCA	3 cut(s)	493, 558, 901
BcoDI	GTCTC	2 cut(s)	31, 874
BfaI	CTAG	2 cut(s)	119, 207
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
BlsI	GCNGC	5 cut(s)	75, 430, 433, 456, 835
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	3 cut(s)	127, 897, 1087
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	131, 668
BmrFI	CCNGG	3 cut(s)	127, 897, 1087
BmsI	GCATC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	360, 822
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	68, 815
Bsc4I	CCNNNNNNNGG	2 cut(s)	531, 676
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	3 cut(s)	487, 601, 839
BseBI	CCWGG	3 cut(s)	127, 897, 1087
BseDI	CCNNGG	2 cut(s)	68, 815
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	531, 676
BseMII	CTCAG	2 cut(s)	689, 728
BseNI	ACTGG	3 cut(s)	487, 601, 839
BseRI	GAGGAG	1 cut(s)	805
BseXI	GCAGC	5 cut(s)	85, 415, 418, 466, 820
BseYI	CCCAGC	1 cut(s)	670
BshFI	GGCC	3 cut(s)	106, 197, 255
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	2 cut(s)	531, 676
BsmAI	GTCTC	2 cut(s)	31, 874
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	106, 197, 255
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	235, 493, 558, 901, 983
Bsp19I	CCATGG	2 cut(s)	68, 815
BspANI	GGCC	3 cut(s)	106, 197, 255
BspCNI	CTCAG	2 cut(s)	688, 729
BspLI	GGNNCC	2 cut(s)	131, 668
BspPI	GGATC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	487, 601, 839
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	2 cut(s)	68, 815
BssMI	GATC	5 cut(s)	235, 493, 558, 901, 983
BssT1I	CCWWGG	2 cut(s)	68, 815
Bst2UI	CCWGG	3 cut(s)	127, 897, 1087
Bst4CI	ACNGT	3 cut(s)	140, 689, 698
Bst6I	CTCTTC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	675, 737, 827
BstDSI	CCRYGG	2 cut(s)	68, 815
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	5 cut(s)	238, 496, 561, 904, 986
BstMAI	GTCTC	2 cut(s)	31, 874
BstMBI	GATC	5 cut(s)	235, 493, 558, 901, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 82, 400
BstNI	CCWGG	3 cut(s)	127, 897, 1087
BstSCI	CCNGG	3 cut(s)	125, 895, 1085
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	5 cut(s)	85, 415, 418, 466, 820
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	106, 197, 255
BtgI	CCRYGG	2 cut(s)	68, 815
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	969
Cac8I	GCNNGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	4 cut(s)	348, 369, 515, 594
CviAII	CATG	9 cut(s)	69, 257, 552, 628, 816, 866, 884, 997, 1056
CviQI	GTAC	4 cut(s)	348, 369, 515, 594
DdeI	CTNAG	3 cut(s)	675, 737, 827
DpnI	GATC	5 cut(s)	237, 495, 560, 903, 985
DpnII	GATC	5 cut(s)	235, 493, 558, 901, 983
EaeI	YGGCCR	2 cut(s)	195, 253
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	2 cut(s)	68, 815
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	3 cut(s)	125, 895, 1085
EcoT14I	CCWWGG	2 cut(s)	68, 815
ErhI	CCWWGG	2 cut(s)	68, 815
FaeI	CATG	9 cut(s)	72, 260, 555, 631, 819, 869, 887, 1000, 1059
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	9 cut(s)	68, 256, 551, 627, 815, 865, 883, 996, 1055
FauNDI	CATATG	3 cut(s)	396, 459, 858
FbaI	TGATCA	3 cut(s)	493, 558, 901
Fnu4HI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
FspBI	CTAG	2 cut(s)	119, 207
GluI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	2 cut(s)	360, 822
HaeIII	GGCC	3 cut(s)	106, 197, 255
HapII	CCGG	1 cut(s)	614
Hin1II	CATG	9 cut(s)	72, 260, 555, 631, 819, 869, 887, 1000, 1059
HinfI	GANTC	4 cut(s)	421, 521, 620, 746
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	5 cut(s)	46, 568, 598, 771, 911
Hpy166II	GTNNAC	5 cut(s)	369, 416, 515, 881, 1083
Hpy188I	TCNGA	4 cut(s)	493, 563, 874, 983
Hpy188III	TCNNGA	5 cut(s)	133, 213, 239, 302, 647
Hpy8I	GTNNAC	5 cut(s)	369, 416, 515, 881, 1083
HpyAV	CCTTC	3 cut(s)	40, 61, 184
HpyCH4III	ACNGT	3 cut(s)	140, 689, 698
HpyCH4V	TGCA	5 cut(s)	297, 330, 454, 731, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 82, 400
HpyF3I	CTNAG	3 cut(s)	675, 737, 827
Hsp92II	CATG	9 cut(s)	72, 260, 555, 631, 819, 869, 887, 1000, 1059
Ksp22I	TGATCA	3 cut(s)	493, 558, 901
Kzo9I	GATC	5 cut(s)	235, 493, 558, 901, 983
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	5 cut(s)	85, 415, 418, 466, 820
LweI	GCATC	1 cut(s)	718
MabI	ACCWGGT	1 cut(s)	895
MaeI	CTAG	2 cut(s)	119, 207
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	5 cut(s)	237, 495, 560, 903, 985
MboI	GATC	5 cut(s)	235, 493, 558, 901, 983
MboII	GAAGA	9 cut(s)	195, 400, 486, 489, 517, 601, 936, 958, 1022
MfeI	CAATTG	1 cut(s)	99
MlsI	TGGCCA	2 cut(s)	197, 255
MluCI	AATT	6 cut(s)	99, 112, 449, 935, 1006, 1091
MluNI	TGGCCA	2 cut(s)	197, 255
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	6 cut(s)	351, 647, 783, 786, 796, 862
Mox20I	TGGCCA	2 cut(s)	197, 255
MscI	TGGCCA	2 cut(s)	197, 255
MseI	TTAA	7 cut(s)	183, 890, 1016, 1046, 1061, 1071, 1094
MslI	CAYNNNNRTG	1 cut(s)	292
Msp20I	TGGCCA	2 cut(s)	197, 255
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	3 cut(s)	127, 897, 1087
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	3 cut(s)	127, 897, 1087
MwoI	GCNNNNNNNGC	3 cut(s)	70, 82, 400
NcoI	CCATGG	2 cut(s)	68, 815
NdeI	CATATG	3 cut(s)	396, 459, 858
NdeII	GATC	5 cut(s)	235, 493, 558, 901, 983
NlaIII	CATG	9 cut(s)	72, 260, 555, 631, 819, 869, 887, 1000, 1059
NlaIV	GGNNCC	2 cut(s)	131, 668
NmuCI	GTSAC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	421, 620, 746
PkrI	GCNGC	5 cut(s)	75, 430, 433, 456, 835
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PshBI	ATTAAT	1 cut(s)	1094
Psp6I	CCWGG	3 cut(s)	125, 895, 1085
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	3 cut(s)	125, 895, 1085
PspN4I	GGNNCC	2 cut(s)	131, 668
PspPI	GGNCC	1 cut(s)	104
RsaI	GTAC	4 cut(s)	349, 370, 516, 595
RsaNI	GTAC	4 cut(s)	348, 369, 515, 594
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	7 cut(s)	183, 890, 1016, 1046, 1061, 1071, 1094
SatI	GCNGC	5 cut(s)	74, 429, 432, 455, 834
Sau3AI	GATC	5 cut(s)	235, 493, 558, 901, 983
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	127, 897, 1087
SexAI	ACCWGGT	1 cut(s)	895
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	6 cut(s)	99, 112, 449, 935, 1006, 1091
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	2 cut(s)	119, 207
StyD4I	CCNGG	3 cut(s)	125, 895, 1085
StyI	CCWWGG	2 cut(s)	68, 815
TaaI	ACNGT	3 cut(s)	140, 689, 698
TaqI	TCGA	1 cut(s)	909
TasI	AATT	6 cut(s)	99, 112, 449, 935, 1006, 1091
TatI	WGTACW	4 cut(s)	347, 368, 514, 593
TfiI	GAWTC	3 cut(s)	421, 620, 746
Tru1I	TTAA	7 cut(s)	183, 890, 1016, 1046, 1061, 1071, 1094
Tru9I	TTAA	7 cut(s)	183, 890, 1016, 1046, 1061, 1071, 1094
TscAI	CASTG	1 cut(s)	976
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	5 cut(s)	73, 428, 431, 454, 833
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	6 cut(s)	22, 413, 540, 854, 1015, 1044
TspRI	CASTG	1 cut(s)	976
VspI	ATTAAT	1 cut(s)	1094
XapI	RAATTY	2 cut(s)	112, 935
XspI	CTAG	2 cut(s)	119, 207
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.