AT2G41330

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016640
Physical Location & Seq
Forward (+)
17226948 .. 17228519
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41330.1

Sequence Viewer

Length: 1209 bp
ATGGGTTCCTCTGTTTCTAAAACCGCTTCCTCTGCTTCTGCTTCTTCTATAACATCGATTTTGAATTCACCTCCGGAGACGGAATTCAACATCCCTTCTTCATCGGTACCTAAAGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCTGCTAAAAAAGGCGACACACACCACTTTGTCTCTCTTACATCGACCACTTACGGTTCTCTTGTTCTCGACGACAGACAAACATTGCCTCACATCTCCGTTTCCGGGAAGAGTAACAAGAAGATGCCTGAAACAGAGGAGGCTCGCGACTCGTTCTCTCCTGACTCAGTGATCAACACATGGGAGCTCATGAACGACCTCGACGACGAATTCGATTCCGCGAATTCCGATACAAGTAAGAGTAATTCCGTCGTAAATTTGGATTCCTTTTCTAAACCCATCACGAATCGAGACGTGGTTATTAATGGGTCTGCGTATGGATCTTACGAAGATGAGGAAGATTGGAGATTATTGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTGATTTAGATCCTAACATTATCTCATCTTACAAAAGAGCACTGTCCTCCAAACAGCTAGGCAAGAACAGTAGCAATGGCCACTCAAATCATTCGGTTTTAGTCAGTTTACCAGAATATGTATCTTCTAGTCCATTGAGTTCTCAGACTTCGGAAAAAGACCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACGAGAACAAGATAGTAGTATACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAGCGATATTGAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCAATGGACTCCAAATACAGGAAAGAGCTTCAGAATGCACTCGGCGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAGAGGCGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGTGAACTGGCAGAGATGTTAAAAGATTTTCCTGCTTGCGAATCCATTGGAGCCTGCGATAGCTGCGGAGATGCAAGGTTTGTGCCGTGTACTAATTGTGGCGGTAGTACTAAAGTGTTTGAGGAACAAGAAGATGGGTTTAAGAGATGCAATGGATGCAATGAGAATGGATTGGTACGTTGTAACAAGTGTTGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

402

Amino Acids

44.39

Weight (kDa)

5.17

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 257 - 323 1.8e-11 Glutaredoxin
GRXCR1-2_C PF23733 355 - 401 1.4e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 160
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 774
AccII CGCG 2 cut(s) 297, 371
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 6 cut(s) 24, 369, 857, 967, 1074, 1110
AclWI GGATC 2 cut(s) 478, 563
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 6 cut(s) 64, 83, 359, 373, 406, 795
AcuI CTGAAG 2 cut(s) 564, 890
AcyI GRCGYC 1 cut(s) 963
AfaI GTAC 4 cut(s) 108, 1099, 1117, 1185
AfiI CCNNNNNNNGG 2 cut(s) 255, 894
AgeI ACCGGT 1 cut(s) 931
AgsI TTSAA 3 cut(s) 64, 88, 743
AjiI CACGTC 1 cut(s) 445
AluBI AGCT 5 cut(s) 116, 337, 616, 904, 1071
AluI AGCT 5 cut(s) 116, 337, 616, 904, 1071
Alw21I GWGCWC 2 cut(s) 339, 601
Alw26I GTCTC 3 cut(s) 71, 187, 435
AlwI GGATC 2 cut(s) 478, 563
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 1 cut(s) 637
ApeKI GCWGC 1 cut(s) 1071
ApoI RAATTY 6 cut(s) 64, 83, 359, 373, 406, 795
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 1 cut(s) 453
AsiGI ACCGGT 1 cut(s) 931
Asp700I GAANNNNTTC 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 60, 1022
AsuII TTCGAA 1 cut(s) 799
AxyI CCTNAGG 1 cut(s) 945
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 2 cut(s) 339, 601
BbvI GCAGC 1 cut(s) 1058
BccI CCATC 3 cut(s) 437, 998, 1136
BceAI ACGGC 2 cut(s) 118, 1078
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 71, 187, 435
BfaI CTAG 3 cut(s) 617, 687, 783
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 1072
BlsI GCNGC 1 cut(s) 1073
BmcAI AGTACT 1 cut(s) 1117
Bme1390I CCNGG 1 cut(s) 256
BmgBI CACGTC 1 cut(s) 445
BmiI GGNNCC 3 cut(s) 7, 108, 1060
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 5 cut(s) 120, 264, 1069, 1145, 1154
Bpu10I CCTNAGC 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 799
BpuMI CCSGG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 963
BsaWI WCCGGW 2 cut(s) 73, 931
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 894
Bse118I RCCGGY 1 cut(s) 931
Bse1I ACTGG 1 cut(s) 1020
Bse21I CCTNAGG 1 cut(s) 945
Bse3DI GCAATG 4 cut(s) 233, 640, 1165, 1174
Bse8I GATNNNNATC 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 56
BseGI GGATG 3 cut(s) 90, 145, 1169
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 255, 894
BseMI GCAATG 4 cut(s) 233, 640, 1165, 1174
BseMII CTCAG 4 cut(s) 330, 716, 802, 959
BseNI ACTGG 1 cut(s) 1020
BseRI GAGGAG 3 cut(s) 302, 878, 998
BseXI GCAGC 1 cut(s) 1058
Bsh1236I CGCG 2 cut(s) 297, 371
BshFI GGCC 1 cut(s) 639
BshNI GGYRCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 931
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 339, 601
BsiSI CCGG 3 cut(s) 74, 255, 932
BslI CCNNNNNNNGG 2 cut(s) 255, 894
BsmAI GTCTC 3 cut(s) 71, 187, 435
BsmBI CGTCTC 2 cut(s) 71, 435
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 1 cut(s) 639
Bsp119I TTCGAA 1 cut(s) 799
Bsp1286I GDGCHC 2 cut(s) 339, 601
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 4 cut(s) 321, 470, 568, 987
Bsp68I TCGCGA 1 cut(s) 297
BspACI CCGC 6 cut(s) 24, 369, 857, 967, 1074, 1110
BspANI GGCC 1 cut(s) 639
BspCNI CTCAG 4 cut(s) 329, 715, 801, 958
BspDI ATCGAT 1 cut(s) 56
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 2 cut(s) 297, 371
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 3 cut(s) 7, 108, 1060
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 478, 563
BspT104I TTCGAA 1 cut(s) 799
BspT107I GGYRCC 1 cut(s) 106
BsrDI GCAATG 4 cut(s) 233, 640, 1165, 1174
BsrFI RCCGGY 1 cut(s) 931
BsrI ACTGG 1 cut(s) 1020
BssAI RCCGGY 1 cut(s) 931
BssMI GATC 4 cut(s) 321, 470, 568, 987
BssNAI GTATAC 1 cut(s) 775
BssNI GRCGYC 1 cut(s) 963
Bst1107I GTATAC 1 cut(s) 775
Bst4CI ACNGT 3 cut(s) 206, 603, 629
Bst6I CTCTTC 2 cut(s) 254, 918
BstACI GRCGYC 1 cut(s) 963
BstAPI GCANNNNNTGC 1 cut(s) 1164
BstBI TTCGAA 1 cut(s) 799
BstC8I GCNNGC 3 cut(s) 295, 1045, 1063
BstDEI CTNAG 5 cut(s) 316, 516, 702, 788, 945
BstF5I GGATG 3 cut(s) 90, 145, 1169
BstFNI CGCG 2 cut(s) 297, 371
BstKTI GATC 4 cut(s) 324, 473, 571, 990
BstMAI GTCTC 3 cut(s) 71, 187, 435
BstMBI GATC 4 cut(s) 321, 470, 568, 987
BstMWI GCNNNNNNNGC 3 cut(s) 32, 1071, 1164
BstSCI CCNGG 1 cut(s) 254
BstUI CGCG 2 cut(s) 297, 371
BstV1I GCAGC 1 cut(s) 1058
BstX2I RGATCY 2 cut(s) 470, 568
BstYI RGATCY 2 cut(s) 470, 568
BstZ17I GTATAC 1 cut(s) 775
Bsu15I ATCGAT 1 cut(s) 56
Bsu36I CCTNAGG 1 cut(s) 945
BsuRI GGCC 1 cut(s) 639
BsuTUI ATCGAT 1 cut(s) 56
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 3 cut(s) 90, 145, 1169
BtsIMutI CAGTG 2 cut(s) 324, 599
BtuMI TCGCGA 1 cut(s) 297
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 3 cut(s) 295, 1045, 1063
CciI TCATGA 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 931
ClaI ATCGAT 1 cut(s) 56
CseI GACGC 1 cut(s) 952
Csp6I GTAC 4 cut(s) 107, 1098, 1116, 1184
CspAI ACCGGT 1 cut(s) 931
CspCI CAANNNNNGTGG 2 cut(s) 509, 544
CviAII CATG 2 cut(s) 330, 340
CviJI RGCY 9 cut(s) 116, 293, 337, 616, 639, 786, 904, 1061, 1071
CviKI_1 RGCY 9 cut(s) 116, 293, 337, 616, 639, 786, 904, 1061, 1071
CviQI GTAC 4 cut(s) 107, 1098, 1116, 1184
DdeI CTNAG 5 cut(s) 316, 516, 702, 788, 945
DpnI GATC 4 cut(s) 323, 472, 570, 989
DpnII GATC 4 cut(s) 321, 470, 568, 987
DraI TTTAAA 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 254, 918
EarI CTCTTC 2 cut(s) 254, 918
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 564, 890
Eco81I CCTNAGG 1 cut(s) 945
EcoICRI GAGCTC 1 cut(s) 337
EcoRI GAATTC 5 cut(s) 64, 83, 359, 373, 795
EcoT38I GRGCYC 1 cut(s) 339
Esp3I CGTCTC 2 cut(s) 71, 435
FaeI CATG 2 cut(s) 333, 343
FatI CATG 2 cut(s) 329, 339
FauNDI CATATG 1 cut(s) 537
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 1 cut(s) 1072
FokI GGATG 3 cut(s) 77, 132, 1176
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 1072
FspBI CTAG 3 cut(s) 617, 687, 783
GluI GCNGC 1 cut(s) 1072
HaeIII GGCC 1 cut(s) 639
HapII CCGG 3 cut(s) 74, 255, 932
HgaI GACGC 1 cut(s) 952
Hin1I GRCGYC 1 cut(s) 963
Hin1II CATG 2 cut(s) 333, 343
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 9 cut(s) 139, 299, 314, 365, 413, 436, 548, 884, 1049
HpaII CCGG 3 cut(s) 74, 255, 932
HphI GGTGA 2 cut(s) 60, 1022
Hpy166II GTNNAC 4 cut(s) 668, 775, 1013, 1098
Hpy188I TCNGA 8 cut(s) 129, 379, 544, 562, 705, 712, 791, 909
Hpy188III TCNNGA 8 cut(s) 74, 218, 296, 311, 340, 433, 440, 991
Hpy8I GTNNAC 4 cut(s) 668, 775, 1013, 1098
Hpy99I CGWCG 5 cut(s) 139, 224, 356, 359, 404
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 3 cut(s) 206, 603, 629
HpyCH4IV ACGT 3 cut(s) 444, 806, 1186
HpyCH4V TGCA 4 cut(s) 914, 1082, 1158, 1167
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 1071, 1164
HpyF3I CTNAG 5 cut(s) 316, 516, 702, 788, 945
HpySE526I ACGT 3 cut(s) 444, 806, 1186
Hsp92I GRCGYC 1 cut(s) 963
Hsp92II CATG 2 cut(s) 333, 343
Kpn2I TCCGGA 1 cut(s) 73
KpnI GGTACC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 4 cut(s) 321, 470, 568, 987
LmnI GCTCC 3 cut(s) 334, 865, 1058
Lsp1109I GCAGC 1 cut(s) 1058
LweI GCATC 5 cut(s) 120, 264, 1069, 1145, 1154
MaeI CTAG 3 cut(s) 617, 687, 783
MaeII ACGT 3 cut(s) 444, 806, 1186
MaeIII GTNAC 3 cut(s) 263, 869, 1190
MalI GATC 4 cut(s) 323, 472, 570, 989
MboI GATC 4 cut(s) 321, 470, 568, 987
MflI RGATCY 2 cut(s) 470, 568
MhlI GDGCHC 2 cut(s) 339, 601
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 9 cut(s) 64, 83, 359, 373, 394, 406, 795, 978, 1102
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 3 cut(s) 293, 308, 878
Mox20I TGGCCA 1 cut(s) 639
MroI TCCGGA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 552
MscI TGGCCA 1 cut(s) 639
MseI TTAA 4 cut(s) 453, 510, 1028, 1149
MslI CAYNNNNRTG 1 cut(s) 878
Msp20I TGGCCA 1 cut(s) 639
MspI CCGG 3 cut(s) 74, 255, 932
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 916
MvnI CGCG 2 cut(s) 297, 371
MwoI GCNNNNNNNGC 3 cut(s) 32, 1071, 1164
NciI CCSGG 1 cut(s) 256
NdeI CATATG 1 cut(s) 537
NdeII GATC 4 cut(s) 321, 470, 568, 987
NlaIII CATG 2 cut(s) 333, 343
NlaIV GGNNCC 3 cut(s) 7, 108, 1060
NmeAIII GCCGAG 1 cut(s) 897
NmuCI GTSAC 1 cut(s) 869
NruI TCGCGA 1 cut(s) 297
NspV TTCGAA 1 cut(s) 799
PagI TCATGA 1 cut(s) 339
PaqCI CACCTGC 1 cut(s) 160
PcsI WCGNNNNNNNCGW 2 cut(s) 351, 360
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 6 cut(s) 139, 365, 413, 436, 548, 1049
PfoI TCCNGGA 1 cut(s) 254
PinAI ACCGGT 1 cut(s) 931
PkrI GCNGC 1 cut(s) 1073
PleI GAGTC 3 cut(s) 293, 308, 878
PpsI GAGTC 3 cut(s) 293, 308, 878
PshBI ATTAAT 1 cut(s) 453
PsiI TTATAA 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 7, 108, 1060
PsuI RGATCY 2 cut(s) 470, 568
RruI TCGCGA 1 cut(s) 297
RsaI GTAC 4 cut(s) 108, 1099, 1117, 1185
RsaNI GTAC 4 cut(s) 107, 1098, 1116, 1184
RseI CAYNNNNRTG 1 cut(s) 878
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 4 cut(s) 453, 510, 1028, 1149
SatI GCNGC 1 cut(s) 1072
Sau3AI GATC 4 cut(s) 321, 470, 568, 987
ScaI AGTACT 1 cut(s) 1117
SchI GAGTC 3 cut(s) 293, 308, 878
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 2 cut(s) 339, 601
SfaNI GCATC 5 cut(s) 120, 264, 1069, 1145, 1154
SfuI TTCGAA 1 cut(s) 799
SmiMI CAYNNNNRTG 1 cut(s) 878
Sse9I AATT 9 cut(s) 64, 83, 359, 373, 394, 406, 795, 978, 1102
SsiI CCGC 6 cut(s) 24, 369, 857, 967, 1074, 1110
SspMI CTAG 3 cut(s) 617, 687, 783
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 206, 603, 629
TaiI ACGT 3 cut(s) 447, 809, 1189
TaqI TCGA 8 cut(s) 56, 137, 194, 219, 351, 363, 439, 799
TasI AATT 9 cut(s) 64, 83, 359, 373, 394, 406, 795, 978, 1102
TatI WGTACW 2 cut(s) 1097, 1115
TfiI GAWTC 6 cut(s) 139, 365, 413, 436, 548, 1049
Tru1I TTAA 4 cut(s) 453, 510, 1028, 1149
Tru9I TTAA 4 cut(s) 453, 510, 1028, 1149
TscAI CASTG 2 cut(s) 324, 606
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 1 cut(s) 1071
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 4 cut(s) 90, 131, 356, 825
TspGWI ACGGA 3 cut(s) 95, 238, 388
TspRI CASTG 2 cut(s) 324, 606
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 6 cut(s) 64, 83, 359, 373, 406, 795
XmiI GTMKAC 1 cut(s) 774
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 3 cut(s) 617, 687, 783
ZrmI AGTACT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.