Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016640

Physical Location & Seq

Genomic Coordinates Reverse (-)

44145815 .. 44147267

Gene Structure 1453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGCTGCTCTTCTTCAACCCTTCGCACCAAAAACCACCCAGAACAACCACACCACCGCCCACAATCACAATGCTCTTGTTCTTCTTCTTCTTCTTCTTCTTCAGCTTCCATAAACTCCTCACCATTCCCACTCCGCAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAAAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCGTATCATCGACCACCCTCTTCCTTCATCCCCATTATCATACACCAATCTCCACAATCAGGATCAACCCCCAGACGAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTAACGATGAATCCCATTCTCATTCTTTTGCACAAAAACCACAATCTTCAGTGAAATTCATAGGAGCGCAAAAGAAGCCGCTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAAATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGGAAATTGCGCACAACACTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCACCAGCACCGGTAAATTCCAATTCCAATGCTTGTTTTCTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGGTTGCGGGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTGGAGGCAAAGCACCAGTGAGACTGCCGCAAGTGTTTGTTAGAGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAATTGGCATTGCTTTTGAAGGGTTTTCCTAGTGCTTCTGCGTTTGGTTGTGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGTTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCTCTGCTTGCTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

362

Amino Acids

39.69

Weight (kDa)

8.74

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	217 - 285	8.7e-11	Glutaredoxin
GRXCR1-2_C	PF23733	315 - 361	2.3e-19	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41330 AT3G57070
malus_domestica	MD14G1084700.v1.1
prunus_persica	Prupe.7G043200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0125081
rosa_laevigata	RLG00000018848
rosa_multiflora	Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii	Rroxscaffold_2G00118710
rosa_rugosa	Rorug02G0255600
rosa_samantha	Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana	Rw2G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	650
Acc16I	TGCGCA	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	1035
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	7 cut(s)	58, 136, 440, 559, 733, 827, 1040
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	416, 601
AcuI	CTGAAG	3 cut(s)	87, 393, 706
AfaI	GTAC	2 cut(s)	776, 979
AfiI	CCNNNNNNNGG	3 cut(s)	286, 493, 507
AgeI	ACCGGT	1 cut(s)	595
AgsI	TTSAA	4 cut(s)	18, 568, 762, 913
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	3 cut(s)	107, 515, 889
AluI	AGCT	3 cut(s)	107, 515, 889
Alw21I	GWGCWC	2 cut(s)	517, 1073
Alw26I	GTCTC	2 cut(s)	202, 814
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	631
ApeKI	GCWGC	4 cut(s)	6, 448, 702, 993
ApoI	RAATTY	2 cut(s)	416, 601
ArsI	GACNNNNNNTTYG	2 cut(s)	639, 671
AsiGI	ACCGGT	1 cut(s)	595
AspLEI	GCGC	3 cut(s)	430, 537, 707
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	2 cut(s)	632, 633
AsuHPI	GGTGA	4 cut(s)	114, 152, 196, 579
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	1040
BanI	GGYRCC	1 cut(s)	1035
BanII	GRGCYC	2 cut(s)	145, 517
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	2 cut(s)	517, 1073
BbvI	GCAGC	3 cut(s)	460, 689, 1005
BccI	CCATC	1 cut(s)	941
BceAI	ACGGC	1 cut(s)	958
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	632, 633
BcoDI	GTCTC	2 cut(s)	202, 814
BfaI	CTAG	2 cut(s)	525, 924
BglI	GCCNNNNNGGC	1 cut(s)	445
BisI	GCNGC	7 cut(s)	7, 440, 449, 559, 703, 827, 994
BlsI	GCNGC	7 cut(s)	8, 441, 450, 560, 704, 828, 995
Bme1390I	CCNGG	3 cut(s)	343, 632, 633
Bme18I	GGWCC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	3 cut(s)	486, 862, 1037
BmrFI	CCNGG	3 cut(s)	343, 632, 633
BmrI	ACTGGG	1 cut(s)	766
BmuI	ACTGGG	1 cut(s)	766
BpiI	GAAGAC	1 cut(s)	648
BpuMI	CCSGG	2 cut(s)	632, 633
BsaJI	CCNNGG	4 cut(s)	342, 631, 632, 864
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 493, 507
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	3 cut(s)	666, 772, 815
Bse3DI	GCAATG	3 cut(s)	467, 902, 1042
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	4 cut(s)	342, 631, 632, 864
BseGI	GGATG	4 cut(s)	254, 720, 751, 956
BseLI	CCNNNNNNNGG	3 cut(s)	286, 493, 507
BseMI	GCAATG	3 cut(s)	467, 902, 1042
BseNI	ACTGG	3 cut(s)	666, 772, 815
BseRI	GAGGAG	4 cut(s)	109, 873, 881, 1045
BseSI	GKGCMC	1 cut(s)	1040
BseXI	GCAGC	3 cut(s)	460, 689, 1005
BshNI	GGYRCC	1 cut(s)	1035
BshTI	ACCGGT	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	517, 1073
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	596, 632
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	3 cut(s)	286, 493, 507
BsmAI	GTCTC	2 cut(s)	202, 814
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	799
BsoBI	CYCGRG	1 cut(s)	631
Bsp1286I	GDGCHC	4 cut(s)	145, 517, 1040, 1073
Bsp143I	GATC	2 cut(s)	289, 717
BspACI	CCGC	7 cut(s)	58, 136, 440, 559, 733, 827, 1040
BspLI	GGNNCC	3 cut(s)	486, 862, 1037
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	1035
BsrDI	GCAATG	3 cut(s)	467, 902, 1042
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	3 cut(s)	666, 772, 815
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	4 cut(s)	342, 631, 632, 864
BssMI	GATC	2 cut(s)	289, 717
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	16, 252
BstC8I	GCNNGC	3 cut(s)	474, 1040, 1078
BstF5I	GGATG	4 cut(s)	254, 720, 751, 956
BstHHI	GCGC	3 cut(s)	430, 537, 707
BstKTI	GATC	2 cut(s)	292, 720
BstMAI	GTCTC	2 cut(s)	202, 814
BstMBI	GATC	2 cut(s)	289, 717
BstMWI	GCNNNNNNNGC	5 cut(s)	436, 445, 448, 1044, 1077
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	341, 630, 631
BstSLI	GKGCMC	1 cut(s)	1040
BstV1I	GCAGC	3 cut(s)	460, 689, 1005
BstV2I	GAAGAC	1 cut(s)	648
BtsCI	GGATG	4 cut(s)	254, 720, 751, 956
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	3 cut(s)	417, 542, 822
Cac8I	GCNNGC	3 cut(s)	474, 1040, 1078
CfoI	GCGC	3 cut(s)	430, 537, 707
Cfr10I	RCCGGY	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	484
Cfr9I	CCCGGG	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	775, 978
CspAI	ACCGGT	1 cut(s)	595
CviQI	GTAC	2 cut(s)	775, 978
DpnI	GATC	2 cut(s)	291, 719
DpnII	GATC	2 cut(s)	289, 717
DrdI	GACNNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	650
Eam1104I	CTCTTC	2 cut(s)	16, 252
EarI	CTCTTC	2 cut(s)	16, 252
Ecl136II	GAGCTC	1 cut(s)	515
Eco24I	GRGCYC	2 cut(s)	145, 517
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	515
Eco57I	CTGAAG	3 cut(s)	87, 393, 706
Eco88I	CYCGRG	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	341
EcoT38I	GRGCYC	2 cut(s)	145, 517
FaiI	YATR	8 cut(s)	113, 219, 268, 353, 422, 445, 507, 852
FaqI	GGGAC	1 cut(s)	767
FauI	CCCGC	2 cut(s)	726, 1047
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	7 cut(s)	7, 440, 449, 559, 703, 827, 994
FokI	GGATG	4 cut(s)	241, 727, 758, 963
FriOI	GRGCYC	2 cut(s)	145, 517
Fsp4HI	GCNGC	7 cut(s)	7, 440, 449, 559, 703, 827, 994
FspBI	CTAG	2 cut(s)	525, 924
FspI	TGCGCA	1 cut(s)	536
GlaI	GCGC	3 cut(s)	429, 536, 706
GluI	GCNGC	7 cut(s)	7, 440, 449, 559, 703, 827, 994
HapII	CCGG	2 cut(s)	596, 632
HhaI	GCGC	3 cut(s)	430, 537, 707
Hin6I	GCGC	3 cut(s)	428, 535, 705
HinP1I	GCGC	3 cut(s)	428, 535, 705
HinfI	GANTC	6 cut(s)	305, 326, 371, 464, 678, 767
HpaII	CCGG	2 cut(s)	596, 632
HphI	GGTGA	4 cut(s)	114, 152, 196, 579
Hpy166II	GTNNAC	2 cut(s)	658, 978
Hpy188I	TCNGA	3 cut(s)	460, 683, 714
Hpy188III	TCNNGA	2 cut(s)	287, 323
Hpy8I	GTNNAC	2 cut(s)	658, 978
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	3 cut(s)	32, 261, 907
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	392, 790, 797, 1047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	436, 445, 448, 1044, 1077
HspAI	GCGC	3 cut(s)	428, 535, 705
Kzo9I	GATC	2 cut(s)	289, 717
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	425, 860
Lsp1109I	GCAGC	3 cut(s)	460, 689, 1005
MaeI	CTAG	2 cut(s)	525, 924
MalI	GATC	2 cut(s)	291, 719
MboI	GATC	2 cut(s)	289, 717
MhlI	GDGCHC	4 cut(s)	145, 517, 1040, 1073
MluCI	AATT	8 cut(s)	416, 530, 568, 601, 607, 847, 896, 1025
MlyI	GAGTC	3 cut(s)	314, 320, 761
MmeI	TCCRAC	1 cut(s)	781
MseI	TTAA	3 cut(s)	363, 552, 873
MslI	CAYNNNNRTG	1 cut(s)	761
MspI	CCGG	2 cut(s)	596, 632
MspR9I	CCNGG	3 cut(s)	343, 632, 633
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	5 cut(s)	436, 445, 448, 1044, 1077
NciI	CCSGG	2 cut(s)	632, 633
NdeII	GATC	2 cut(s)	289, 717
NlaIV	GGNNCC	3 cut(s)	486, 862, 1037
NmeAIII	GCCGAG	1 cut(s)	889
NsbI	TGCGCA	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	3 cut(s)	371, 464, 678
PflFI	GACNNNGTC	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	595
PkrI	GCNGC	7 cut(s)	8, 441, 450, 560, 704, 828, 995
PleI	GAGTC	3 cut(s)	313, 320, 761
PpsI	GAGTC	3 cut(s)	313, 320, 761
Psp124BI	GAGCTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	3 cut(s)	486, 862, 1037
PspPI	GGNCC	1 cut(s)	484
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	2 cut(s)	776, 979
RsaNI	GTAC	2 cut(s)	775, 978
RseI	CAYNNNNRTG	1 cut(s)	761
SacI	GAGCTC	1 cut(s)	517
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	363, 552, 873
SatI	GCNGC	7 cut(s)	7, 440, 449, 559, 703, 827, 994
Sau3AI	GATC	2 cut(s)	289, 717
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	3 cut(s)	314, 320, 761
ScrFI	CCNGG	3 cut(s)	343, 632, 633
SduI	GDGCHC	4 cut(s)	145, 517, 1040, 1073
SinI	GGWCC	1 cut(s)	484
SmaI	CCCGGG	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	761
Sse9I	AATT	8 cut(s)	416, 530, 568, 601, 607, 847, 896, 1025
SsiI	CCGC	7 cut(s)	58, 136, 440, 559, 733, 827, 1040
SspMI	CTAG	2 cut(s)	525, 924
SstI	GAGCTC	1 cut(s)	517
StyD4I	CCNGG	3 cut(s)	341, 630, 631
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	237
TasI	AATT	8 cut(s)	416, 530, 568, 601, 607, 847, 896, 1025
TatI	WGTACW	2 cut(s)	774, 977
TauI	GCSGC	3 cut(s)	442, 561, 829
TfiI	GAWTC	3 cut(s)	371, 464, 678
Tru1I	TTAA	3 cut(s)	363, 552, 873
Tru9I	TTAA	3 cut(s)	363, 552, 873
TscAI	CASTG	3 cut(s)	417, 549, 822
TseI	GCWGC	4 cut(s)	6, 448, 702, 993
TspDTI	ATGAA	5 cut(s)	146, 243, 384, 409, 1026
TspGWI	ACGGA	3 cut(s)	218, 319, 1071
TspMI	CCCGGG	1 cut(s)	631
TspRI	CASTG	3 cut(s)	417, 549, 822
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	2 cut(s)	416, 601
XmaI	CCCGGG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	2 cut(s)	525, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.