AT3G57070

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016640
Physical Location & Seq
Forward (+)
21123859 .. 21125682
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57070.1

Sequence Viewer

Length: 1254 bp
ATGGGTTCTTCTGCTTCAAAGACCGCTTCTTCCGTTTCTTCTGCTTCTTCCTCATCTGCGTTTTCTCCACCGCCGACCAAATTCAGCTCCGATTCATCTTCACCGGCGGTGCAGAGAGCTTTTTCGTTTCCGACGCCGTTGGTTCACCATCCTCCGGCGAGAAAAGGCGACTCTCATCACCTTGTTTCCCTTACATCTACATCGTACGGTTCTCTTCTCCTCCTTGATCTCGATGGATCCAAAAACTCCTCTTCCGACCAACAAACGCTGCCTCGTATCTCAATCTCCGGGAAGAACACACCAGATCCGGTCTCTCCTGATTCAGTCATAAACACTTGGGAGCTTATGGATGGCTTGGACGATGAATTCGAATTCGAAATTCCCAAACCGGGTAAGCGTCTAAATTCGGATTTTTGCTCTAAACCCGACCCGAATCGGAATGTGAGTTTAAATGGGTCTTCGTTGAAATTGGATGAATCTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCCTTTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCTGATTTAGATCCCAGCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAGCAATCATAGTAATACTAGAAACCCTCATAGACCCACAAAGTCTCTCTCTTGTAGCCCATCATCAAATCCATCCATCTTAATAAGCGAAGAACCAAAATCTGTATCCTCTAGTCAATTGATTTCATCACCAGCCAAACCGAGATTACCAGGAACAGAAGACAAGATTGTACTCTACTTCACAACCCTCAGAGGAATTCGAAAGACATACGAGGATTGTTGTTGCGTTAGAGCGATATTGAGAGGAGTTCAAGTGTCCGTAGACGAACGTGACATCTCTATGGATTCCAAATACAGGAAAGAGCTTCAAAGCGTGCTTGGCGCCGCAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATCAGAGGAACTCACATTGGTGGCGTGGAGGAGATTATGCAGCTAAATGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGCCGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTGCGTTGTCGTGTGTGTTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

417

Amino Acids

45.72

Weight (kDa)

6.12

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 271 - 339 9e-12 Glutaredoxin
GRXCR1-2_C PF23733 370 - 416 7.1e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 962
AccI GTMKAC 1 cut(s) 903
AciI CCGC 5 cut(s) 24, 71, 107, 966, 1198
AclWI GGATC 4 cut(s) 231, 244, 299, 587
AcsI RAATTY 6 cut(s) 80, 365, 371, 378, 403, 837
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 2 cut(s) 134, 963
AfaI GTAC 3 cut(s) 206, 813, 1144
AfiI CCNNNNNNNGG 3 cut(s) 154, 389, 936
AgeI ACCGGT 1 cut(s) 976
AgsI TTSAA 6 cut(s) 18, 466, 893, 950, 1075, 1175
AjnI CCWGG 1 cut(s) 790
AleI CACNNNNGTG 2 cut(s) 1017, 1166
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
AluBI AGCT 8 cut(s) 87, 119, 343, 623, 637, 946, 1042, 1116
AluI AGCT 8 cut(s) 87, 119, 343, 623, 637, 946, 1042, 1116
Alw26I GTCTC 3 cut(s) 316, 610, 690
AlwI GGATC 4 cut(s) 231, 244, 299, 587
ApeKI GCWGC 2 cut(s) 268, 1039
ApoI RAATTY 6 cut(s) 80, 365, 371, 378, 403, 837
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AsiGI ACCGGT 1 cut(s) 976
Asp700I GAANNNNTTC 2 cut(s) 576, 1079
AspLEI GCGC 1 cut(s) 965
AsuC2I CCSGG 2 cut(s) 289, 390
AsuHPI GGTGA 6 cut(s) 93, 137, 170, 762, 1067, 1133
AsuII TTCGAA 3 cut(s) 369, 375, 841
AxyI CCTNAGG 1 cut(s) 990
BamHI GGATCC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 962
BbsI GAAGAC 4 cut(s) 450, 510, 621, 807
BbvI GCAGC 2 cut(s) 255, 1051
BccI CCATC 9 cut(s) 156, 227, 344, 503, 709, 721, 725, 1043, 1148
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 757
BcnI CCSGG 2 cut(s) 289, 390
BcoDI GTCTC 3 cut(s) 316, 610, 690
BfaI CTAG 2 cut(s) 660, 753
BfoI RGCGCY 1 cut(s) 966
BfuI GTATCC 1 cut(s) 757
BisI GCNGC 3 cut(s) 269, 966, 1040
BlsI GCNGC 3 cut(s) 270, 967, 1041
Bme1390I CCNGG 3 cut(s) 289, 390, 792
BmiI GGNNCC 3 cut(s) 238, 522, 964
BmrFI CCNGG 3 cut(s) 289, 390, 792
BmsI GCATC 1 cut(s) 1114
BpiI GAAGAC 4 cut(s) 450, 510, 621, 807
Bpu10I CCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 3 cut(s) 369, 375, 841
BpuMI CCSGG 2 cut(s) 289, 390
BsaBI GATNNNNATC 1 cut(s) 591
BsaHI GRCGYC 2 cut(s) 134, 963
BsaI GGTCTC 1 cut(s) 316
BsaWI WCCGGW 2 cut(s) 307, 976
BsaXI ACNNNNNCTCC 6 cut(s) 504, 534, 879, 909, 1105, 1135
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 389, 936
Bse118I RCCGGY 2 cut(s) 103, 976
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 1219
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 1 cut(s) 792
BseGI GGATG 5 cut(s) 148, 355, 478, 608, 713
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 154, 389, 936
BseMI GCAATG 1 cut(s) 1219
BseMII CTCAG 2 cut(s) 844, 1004
BseRI GAGGAG 4 cut(s) 209, 238, 900, 1043
BseXI GCAGC 2 cut(s) 255, 1051
BseYI CCCAGC 1 cut(s) 596
BsgI GTGCAG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 962
BshTI ACCGGT 1 cut(s) 976
BsiSI CCGG 7 cut(s) 104, 155, 288, 308, 389, 977, 1111
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 1117
BslI CCNNNNNNNGG 3 cut(s) 154, 389, 936
BsmAI GTCTC 3 cut(s) 316, 610, 690
BsmFI GGGAC 1 cut(s) 1117
Bso31I GGTCTC 1 cut(s) 316
Bsp119I TTCGAA 3 cut(s) 369, 375, 841
Bsp143I GATC 4 cut(s) 226, 236, 304, 592
BspACI CCGC 5 cut(s) 24, 71, 107, 966, 1198
BspCNI CTCAG 2 cut(s) 843, 1003
BspLI GGNNCC 3 cut(s) 238, 522, 964
BspPI GGATC 4 cut(s) 231, 244, 299, 587
BspT104I TTCGAA 3 cut(s) 369, 375, 841
BspT107I GGYRCC 1 cut(s) 962
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 1219
BsrFI RCCGGY 2 cut(s) 103, 976
BssAI RCCGGY 2 cut(s) 103, 976
BssMI GATC 4 cut(s) 226, 236, 304, 592
BssNI GRCGYC 2 cut(s) 134, 963
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 209, 1151, 1191
Bst6I CTCTTC 2 cut(s) 219, 256
BstACI GRCGYC 2 cut(s) 134, 963
BstBI TTCGAA 3 cut(s) 369, 375, 841
BstC8I GCNNGC 1 cut(s) 956
BstDEI CTNAG 4 cut(s) 540, 633, 830, 990
BstF5I GGATG 5 cut(s) 148, 355, 478, 608, 713
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 1 cut(s) 965
BstKTI GATC 4 cut(s) 229, 239, 307, 595
BstMAI GTCTC 3 cut(s) 316, 610, 690
BstMBI GATC 4 cut(s) 226, 236, 304, 592
BstMWI GCNNNNNNNGC 1 cut(s) 960
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 1 cut(s) 1110
BstSCI CCNGG 3 cut(s) 287, 388, 790
BstV1I GCAGC 2 cut(s) 255, 1051
BstV2I GAAGAC 4 cut(s) 450, 510, 621, 807
BstX2I RGATCY 3 cut(s) 236, 304, 592
BstYI RGATCY 3 cut(s) 236, 304, 592
Bsu36I CCTNAGG 1 cut(s) 990
BsuI GTATCC 1 cut(s) 757
BtsCI GGATG 5 cut(s) 148, 355, 478, 608, 713
Cac8I GCNNGC 1 cut(s) 956
CfoI GCGC 1 cut(s) 965
Cfr10I RCCGGY 2 cut(s) 103, 976
CseI GACGC 2 cut(s) 142, 386
Csp6I GTAC 3 cut(s) 205, 812, 1143
CspAI ACCGGT 1 cut(s) 976
CspCI CAANNNNNGTGG 2 cut(s) 533, 568
CviAII CATG 1 cut(s) 1107
CviQI GTAC 3 cut(s) 205, 812, 1143
DdeI CTNAG 4 cut(s) 540, 633, 830, 990
DinI GGCGCC 1 cut(s) 964
DpnI GATC 4 cut(s) 228, 238, 306, 594
DpnII GATC 4 cut(s) 226, 236, 304, 592
DraI TTTAAA 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 219, 256
EarI CTCTTC 2 cut(s) 219, 256
Eco31I GGTCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 588
Eco81I CCTNAGG 1 cut(s) 990
EcoRI GAATTC 3 cut(s) 365, 371, 837
EcoRII CCWGG 1 cut(s) 790
EgeI GGCGCC 1 cut(s) 964
EheI GGCGCC 1 cut(s) 964
FaeI CATG 1 cut(s) 1110
FaiI YATR 9 cut(s) 329, 347, 534, 651, 672, 850, 923, 1037, 1108
FaqI GGGAC 1 cut(s) 1117
FatI CATG 1 cut(s) 1106
FblI GTMKAC 1 cut(s) 903
Fnu4HI GCNGC 3 cut(s) 269, 966, 1040
FokI GGATG 5 cut(s) 135, 362, 485, 595, 700
Fsp4HI GCNGC 3 cut(s) 269, 966, 1040
FspBI CTAG 2 cut(s) 660, 753
GlaI GCGC 1 cut(s) 964
GluI GCNGC 3 cut(s) 269, 966, 1040
GsaI CCCAGC 1 cut(s) 600
HaeII RGCGCY 1 cut(s) 966
HapII CCGG 7 cut(s) 104, 155, 288, 308, 389, 977, 1111
HgaI GACGC 2 cut(s) 142, 386
HhaI GCGC 1 cut(s) 965
Hin1I GRCGYC 2 cut(s) 134, 963
Hin1II CATG 1 cut(s) 1110
Hin6I GCGC 1 cut(s) 963
HinP1I GCGC 1 cut(s) 963
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 8 cut(s) 92, 170, 320, 433, 476, 495, 572, 926
HpaII CCGG 7 cut(s) 104, 155, 288, 308, 389, 977, 1111
HphI GGTGA 6 cut(s) 93, 137, 170, 762, 1067, 1133
Hpy166II GTNNAC 3 cut(s) 145, 904, 1094
Hpy188I TCNGA 9 cut(s) 91, 132, 256, 409, 438, 568, 586, 833, 1004
Hpy188III TCNNGA 2 cut(s) 230, 317
Hpy8I GTNNAC 3 cut(s) 145, 904, 1094
Hpy99I CGWCG 1 cut(s) 136
HpyCH4III ACNGT 3 cut(s) 209, 1151, 1191
HpyCH4IV ACGT 1 cut(s) 910
HpyCH4V TGCA 4 cut(s) 112, 1039, 1127, 1212
HpyF10VI GCNNNNNNNGC 1 cut(s) 960
HpyF3I CTNAG 4 cut(s) 540, 633, 830, 990
HpySE526I ACGT 1 cut(s) 910
Hsp92I GRCGYC 2 cut(s) 134, 963
Hsp92II CATG 1 cut(s) 1110
HspAI GCGC 1 cut(s) 963
KasI GGCGCC 1 cut(s) 962
Kzo9I GATC 4 cut(s) 226, 236, 304, 592
LmnI GCTCC 3 cut(s) 92, 340, 1113
Lsp1109I GCAGC 2 cut(s) 255, 1051
LweI GCATC 1 cut(s) 1114
MaeI CTAG 2 cut(s) 660, 753
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 1 cut(s) 911
MalI GATC 4 cut(s) 228, 238, 306, 594
MboI GATC 4 cut(s) 226, 236, 304, 592
MfeI CAATTG 1 cut(s) 758
MflI RGATCY 3 cut(s) 236, 304, 592
MluCI AATT 9 cut(s) 80, 365, 371, 378, 403, 467, 758, 837, 1058
Mly113I GGCGCC 1 cut(s) 963
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 155, 279
MroXI GAANNNNTTC 2 cut(s) 576, 1079
MseI TTAA 4 cut(s) 449, 641, 722, 1194
MslI CAYNNNNRTG 3 cut(s) 920, 1017, 1166
MspI CCGG 7 cut(s) 104, 155, 288, 308, 389, 977, 1111
MspR9I CCNGG 3 cut(s) 289, 390, 792
MunI CAATTG 1 cut(s) 758
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 1 cut(s) 960
NarI GGCGCC 1 cut(s) 963
NciI CCSGG 2 cut(s) 289, 390
NdeII GATC 4 cut(s) 226, 236, 304, 592
NlaIII CATG 1 cut(s) 1110
NlaIV GGNNCC 3 cut(s) 238, 522, 964
NmuCI GTSAC 1 cut(s) 911
NspI RCATGY 1 cut(s) 1110
NspV TTCGAA 3 cut(s) 369, 375, 841
OliI CACNNNNGTG 2 cut(s) 1017, 1166
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 504
PdmI GAANNNNTTC 2 cut(s) 576, 1079
PfeI GAWTC 7 cut(s) 92, 320, 433, 476, 495, 572, 926
Pfl23II CGTACG 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 976
PkrI GCNGC 3 cut(s) 270, 967, 1041
PleI GAGTC 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 966
PpsI GAGTC 1 cut(s) 164
PsiI TTATAA 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 1 cut(s) 790
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 238, 522, 964
PsuI RGATCY 3 cut(s) 236, 304, 592
RsaI GTAC 3 cut(s) 206, 813, 1144
RsaNI GTAC 3 cut(s) 205, 812, 1143
RseI CAYNNNNRTG 3 cut(s) 920, 1017, 1166
SaqAI TTAA 4 cut(s) 449, 641, 722, 1194
SatI GCNGC 3 cut(s) 269, 966, 1040
Sau3AI GATC 4 cut(s) 226, 236, 304, 592
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 289, 390, 792
SfaNI GCATC 1 cut(s) 1114
SfoI GGCGCC 1 cut(s) 964
SfuI TTCGAA 3 cut(s) 369, 375, 841
SgrAI CRCCGGYG 1 cut(s) 103
SmiMI CAYNNNNRTG 3 cut(s) 920, 1017, 1166
Sse9I AATT 9 cut(s) 80, 365, 371, 378, 403, 467, 758, 837, 1058
SsiI CCGC 5 cut(s) 24, 71, 107, 966, 1198
SspDI GGCGCC 1 cut(s) 962
SspMI CTAG 2 cut(s) 660, 753
StyD4I CCNGG 3 cut(s) 287, 388, 790
TaaI ACNGT 3 cut(s) 209, 1151, 1191
TaiI ACGT 1 cut(s) 913
TaqI TCGA 5 cut(s) 231, 369, 375, 498, 841
TasI AATT 9 cut(s) 80, 365, 371, 378, 403, 467, 758, 837, 1058
TatI WGTACW 2 cut(s) 811, 1142
TauI GCSGC 1 cut(s) 968
TfiI GAWTC 7 cut(s) 92, 320, 433, 476, 495, 572, 926
Tru1I TTAA 4 cut(s) 449, 641, 722, 1194
Tru9I TTAA 4 cut(s) 449, 641, 722, 1194
TseFI GTSAC 1 cut(s) 911
TseI GCWGC 2 cut(s) 268, 1039
Tsp45I GTSAC 1 cut(s) 911
TspDTI ATGAA 5 cut(s) 84, 378, 489, 756, 1200
TspGWI ACGGA 2 cut(s) 22, 889
XapI RAATTY 6 cut(s) 80, 365, 371, 378, 403, 837
XceI RCATGY 1 cut(s) 1110
XmiI GTMKAC 1 cut(s) 903
XmnI GAANNNNTTC 2 cut(s) 576, 1079
XspI CTAG 2 cut(s) 660, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.