Rh2BG322300

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016640
Physical Location & Seq
Reverse (-)
38769861 .. 38771648
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG322300.1

Sequence Viewer

Length: 1086 bp
ATGGGCTGCTCTTCTTCAACCCTTCGCACCAAAAACCACCCAGAACAACCACACCACCGCCCACAATCACAATGCTCTTGTTCTTCTTCTTCTTCTTCTTCAGCTTCCATAAACTCCTCACCATTCCCACTCCGAAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAAAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCGTATCATCGACCACCCTCTTCCTTCATCCCCATTATCATACACCAATCTCCACAGTCAGGACCAACCCCCAGACAAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTAACGATGAATCCCATTCTCCTTCTTTTGCACAAAAACCACAATCTTCAGTGAAATTCATAGGAGCGCAAAAGAAGCCGCTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAGATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGCAAATTGCGCACAACGCTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCACCAGCACCGGTAAATTCCAATTCCAATGCTTGTTTTCTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGTTTGCGCGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTAGAGGTAAAGCACCAGTGAGGCTGCCGCAAGTGTTTGTTAGAGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAATTGGCATTGCTTTTGAAGGGTTTTCCTAGTGCTTCTGCGTTTGGTTGTGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGTTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCTCTGCTTGCTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

361

Amino Acids

39.56

Weight (kDa)

8.9

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 216 - 284 9.4e-11 Glutaredoxin
GRXCR1-2_C PF23733 314 - 360 2.3e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
Acc16I TGCGCA 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 1032
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 732
AciI CCGC 5 cut(s) 58, 437, 556, 824, 1037
AcsI RAATTY 2 cut(s) 413, 598
AcuI CTGAAG 3 cut(s) 84, 390, 703
AfaI GTAC 2 cut(s) 773, 976
AfiI CCNNNNNNNGG 3 cut(s) 283, 490, 504
AgeI ACCGGT 1 cut(s) 592
AgsI TTSAA 4 cut(s) 18, 565, 759, 910
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 3 cut(s) 104, 512, 886
AluI AGCT 3 cut(s) 104, 512, 886
Alw21I GWGCWC 2 cut(s) 514, 1070
Alw26I GTCTC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 628
ApeKI GCWGC 6 cut(s) 6, 445, 541, 699, 820, 990
ApoI RAATTY 2 cut(s) 413, 598
ArsI GACNNNNNNTTYG 2 cut(s) 636, 668
AsiGI ACCGGT 1 cut(s) 592
AspLEI GCGC 4 cut(s) 427, 534, 704, 732
AspS9I GGNCC 2 cut(s) 286, 481
AsuC2I CCSGG 2 cut(s) 629, 630
AsuHPI GGTGA 4 cut(s) 111, 149, 193, 576
AvaI CYCGRG 1 cut(s) 628
AvaII GGWCC 2 cut(s) 286, 481
BaeGI GKGCMC 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 1032
BanII GRGCYC 2 cut(s) 142, 514
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 514, 1070
BbvI GCAGC 5 cut(s) 457, 528, 686, 807, 1002
BccI CCATC 2 cut(s) 472, 938
BceAI ACGGC 1 cut(s) 955
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 2 cut(s) 629, 630
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 522, 921
BglI GCCNNNNNGGC 1 cut(s) 442
BisI GCNGC 9 cut(s) 7, 437, 446, 542, 556, 700, 821, 824, 991
BlsI GCNGC 9 cut(s) 8, 438, 447, 543, 557, 701, 822, 825, 992
Bme1390I CCNGG 3 cut(s) 340, 629, 630
Bme18I GGWCC 2 cut(s) 286, 481
BmeT110I CYCGRG 1 cut(s) 628
BmgT120I GGNCC 2 cut(s) 286, 481
BmiI GGNNCC 3 cut(s) 483, 859, 1034
BmrFI CCNGG 3 cut(s) 340, 629, 630
BmrI ACTGGG 1 cut(s) 763
BmuI ACTGGG 1 cut(s) 763
BpiI GAAGAC 1 cut(s) 645
BpuMI CCSGG 2 cut(s) 629, 630
BsaJI CCNNGG 4 cut(s) 339, 628, 629, 861
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 490, 504
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 3 cut(s) 663, 769, 812
Bse3DI GCAATG 3 cut(s) 464, 899, 1039
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 4 cut(s) 339, 628, 629, 861
BseGI GGATG 4 cut(s) 251, 717, 748, 953
BseLI CCNNNNNNNGG 3 cut(s) 283, 490, 504
BseMI GCAATG 3 cut(s) 464, 899, 1039
BseNI ACTGG 3 cut(s) 663, 769, 812
BseRI GAGGAG 4 cut(s) 106, 870, 878, 1042
BseSI GKGCMC 1 cut(s) 1037
BseXI GCAGC 5 cut(s) 457, 528, 686, 807, 1002
Bsh1236I CGCG 1 cut(s) 732
BshNI GGYRCC 1 cut(s) 1032
BshTI ACCGGT 1 cut(s) 592
BsiHKAI GWGCWC 2 cut(s) 514, 1070
BsiHKCI CYCGRG 1 cut(s) 628
BsiSI CCGG 2 cut(s) 593, 629
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 3 cut(s) 283, 490, 504
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 764
BsmI GAATGC 1 cut(s) 796
BsoBI CYCGRG 1 cut(s) 628
Bsp1286I GDGCHC 4 cut(s) 142, 514, 1037, 1070
Bsp143I GATC 1 cut(s) 714
BspACI CCGC 5 cut(s) 58, 437, 556, 824, 1037
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 3 cut(s) 483, 859, 1034
BspQI GCTCTTC 2 cut(s) 16, 130
BspT107I GGYRCC 1 cut(s) 1032
BsrDI GCAATG 3 cut(s) 464, 899, 1039
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 3 cut(s) 663, 769, 812
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 4 cut(s) 339, 628, 629, 861
BssMI GATC 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 281, 356
Bst6I CTCTTC 3 cut(s) 16, 130, 249
BstC8I GCNNGC 3 cut(s) 471, 1037, 1075
BstF5I GGATG 4 cut(s) 251, 717, 748, 953
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 4 cut(s) 427, 534, 704, 732
BstKTI GATC 1 cut(s) 717
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 714
BstMWI GCNNNNNNNGC 7 cut(s) 433, 442, 445, 531, 538, 1041, 1074
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 3 cut(s) 338, 627, 628
BstSLI GKGCMC 1 cut(s) 1037
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 5 cut(s) 457, 528, 686, 807, 1002
BstV2I GAAGAC 1 cut(s) 645
BtsCI GGATG 4 cut(s) 251, 717, 748, 953
BtsIMutI CAGTG 2 cut(s) 414, 819
Cac8I GCNNGC 3 cut(s) 471, 1037, 1075
CfoI GCGC 4 cut(s) 427, 534, 704, 732
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 2 cut(s) 286, 481
Cfr9I CCCGGG 1 cut(s) 628
Csp6I GTAC 2 cut(s) 772, 975
CspAI ACCGGT 1 cut(s) 592
CviQI GTAC 2 cut(s) 772, 975
DpnI GATC 1 cut(s) 716
DpnII GATC 1 cut(s) 714
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 3 cut(s) 16, 130, 249
EarI CTCTTC 3 cut(s) 16, 130, 249
Ecl136II GAGCTC 1 cut(s) 512
Eco24I GRGCYC 2 cut(s) 142, 514
Eco47I GGWCC 2 cut(s) 286, 481
Eco53kI GAGCTC 1 cut(s) 512
Eco57I CTGAAG 3 cut(s) 84, 390, 703
Eco88I CYCGRG 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 338
EcoT38I GRGCYC 2 cut(s) 142, 514
FaiI YATR 8 cut(s) 110, 216, 265, 350, 419, 442, 504, 849
FaqI GGGAC 1 cut(s) 764
FauI CCCGC 1 cut(s) 1044
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 9 cut(s) 7, 437, 446, 542, 556, 700, 821, 824, 991
FokI GGATG 4 cut(s) 238, 724, 755, 960
FriOI GRGCYC 2 cut(s) 142, 514
Fsp4HI GCNGC 9 cut(s) 7, 437, 446, 542, 556, 700, 821, 824, 991
FspBI CTAG 2 cut(s) 522, 921
FspI TGCGCA 1 cut(s) 533
GlaI GCGC 4 cut(s) 426, 533, 703, 731
GluI GCNGC 9 cut(s) 7, 437, 446, 542, 556, 700, 821, 824, 991
HapII CCGG 2 cut(s) 593, 629
HhaI GCGC 4 cut(s) 427, 534, 704, 732
Hin6I GCGC 4 cut(s) 425, 532, 702, 730
HinP1I GCGC 4 cut(s) 425, 532, 702, 730
HinfI GANTC 5 cut(s) 323, 368, 461, 675, 764
HpaII CCGG 2 cut(s) 593, 629
HphI GGTGA 4 cut(s) 111, 149, 193, 576
Hpy166II GTNNAC 2 cut(s) 655, 975
Hpy188I TCNGA 4 cut(s) 134, 457, 680, 711
Hpy188III TCNNGA 2 cut(s) 284, 320
Hpy8I GTNNAC 2 cut(s) 655, 975
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 4 cut(s) 32, 258, 390, 904
HpyCH4III ACNGT 2 cut(s) 281, 356
HpyCH4V TGCA 4 cut(s) 389, 787, 794, 1044
HpyF10VI GCNNNNNNNGC 7 cut(s) 433, 442, 445, 531, 538, 1041, 1074
HspAI GCGC 4 cut(s) 425, 532, 702, 730
Kzo9I GATC 1 cut(s) 714
LguI GCTCTTC 2 cut(s) 16, 130
LmnI GCTCC 2 cut(s) 422, 857
Lsp1109I GCAGC 5 cut(s) 457, 528, 686, 807, 1002
MaeI CTAG 2 cut(s) 522, 921
MalI GATC 1 cut(s) 716
MboI GATC 1 cut(s) 714
MhlI GDGCHC 4 cut(s) 142, 514, 1037, 1070
MluCI AATT 8 cut(s) 413, 527, 565, 598, 604, 844, 893, 1022
MlyI GAGTC 2 cut(s) 317, 758
MseI TTAA 3 cut(s) 360, 549, 870
MslI CAYNNNNRTG 1 cut(s) 758
MspI CCGG 2 cut(s) 593, 629
MspR9I CCNGG 3 cut(s) 340, 629, 630
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 1 cut(s) 340
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 7 cut(s) 433, 442, 445, 531, 538, 1041, 1074
NciI CCSGG 2 cut(s) 629, 630
NdeII GATC 1 cut(s) 714
NlaIV GGNNCC 3 cut(s) 483, 859, 1034
NmeAIII GCCGAG 1 cut(s) 886
NsbI TGCGCA 1 cut(s) 533
PciSI GCTCTTC 2 cut(s) 16, 130
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 3 cut(s) 368, 461, 675
PflFI GACNNNGTC 1 cut(s) 326
PinAI ACCGGT 1 cut(s) 592
PkrI GCNGC 9 cut(s) 8, 438, 447, 543, 557, 701, 822, 825, 992
PleI GAGTC 2 cut(s) 317, 758
PpsI GAGTC 2 cut(s) 317, 758
Psp124BI GAGCTC 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 3 cut(s) 483, 859, 1034
PspPI GGNCC 2 cut(s) 286, 481
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 2 cut(s) 773, 976
RsaNI GTAC 2 cut(s) 772, 975
RseI CAYNNNNRTG 1 cut(s) 758
SacI GAGCTC 1 cut(s) 514
SapI GCTCTTC 2 cut(s) 16, 130
SaqAI TTAA 3 cut(s) 360, 549, 870
SatI GCNGC 9 cut(s) 7, 437, 446, 542, 556, 700, 821, 824, 991
Sau3AI GATC 1 cut(s) 714
Sau96I GGNCC 2 cut(s) 286, 481
SchI GAGTC 2 cut(s) 317, 758
ScrFI CCNGG 3 cut(s) 340, 629, 630
SduI GDGCHC 4 cut(s) 142, 514, 1037, 1070
SinI GGWCC 2 cut(s) 286, 481
SmaI CCCGGG 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 758
Sse9I AATT 8 cut(s) 413, 527, 565, 598, 604, 844, 893, 1022
SsiI CCGC 5 cut(s) 58, 437, 556, 824, 1037
SspMI CTAG 2 cut(s) 522, 921
SstI GAGCTC 1 cut(s) 514
StyD4I CCNGG 3 cut(s) 338, 627, 628
TaaI ACNGT 2 cut(s) 281, 356
TaqI TCGA 1 cut(s) 234
TasI AATT 8 cut(s) 413, 527, 565, 598, 604, 844, 893, 1022
TatI WGTACW 2 cut(s) 771, 974
TauI GCSGC 3 cut(s) 439, 558, 826
TfiI GAWTC 3 cut(s) 368, 461, 675
Tru1I TTAA 3 cut(s) 360, 549, 870
Tru9I TTAA 3 cut(s) 360, 549, 870
TscAI CASTG 2 cut(s) 414, 819
TseI GCWGC 6 cut(s) 6, 445, 541, 699, 820, 990
TspDTI ATGAA 5 cut(s) 143, 240, 381, 406, 1023
TspGWI ACGGA 3 cut(s) 215, 316, 1068
TspMI CCCGGG 1 cut(s) 628
TspRI CASTG 2 cut(s) 414, 819
Tth111I GACNNNGTC 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 286, 481
XapI RAATTY 2 cut(s) 413, 598
XmaI CCCGGG 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 522, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.