Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016640

Physical Location & Seq

Genomic Coordinates Reverse (-)

37738827 .. 37739909

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018848

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGCTGCTCTTCTTCAACCCTTCGCACCAAAAACCACCCAGAACAACCACACCACCGCCCACAATCACAATGTTCTTCTTCTTCTTCTTCTTCTTCAGCTTCCATAAACTCCTCACCATTCCCACTCCGAAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAGAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCGTATCATCGACCACCCTCTTCCTTCATCCCCATTATCATACACCAATCTCCACAATCAGGATCAACCCCCAGACAAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTAACGATGAATCCCATTCTCATTCTTTTGCACAAAAACCACAATCTTCAGTGACATTCATAGGAGCGCAAAAGAAGCCACTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAGATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGGAAATTGCGCACAACACTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCACCAGCACCGGTAAATTCCAATACCAATGCTTGTTTTCTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGGTTGCGGGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTAGAGGCAAAGCACCAGTGAGGCTGCCGCAAGTGTTTGTTAGGGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAGTTGGCATTGCTTTTGAAGGGTTTTCCTAGTGCTTCTGCGTTTGGTTGTGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGTTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCTCTGCTTGCTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

361

Amino Acids

39.58

Weight (kDa)

8.78

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	215 - 283	9.4e-11	Glutaredoxin
GRXCR1-2_C	PF23733	313 - 359	2.3e-19	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41330 AT3G57070
malus_domestica	MD14G1084700.v1.1
prunus_persica	Prupe.7G043200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0125081
rosa_laevigata	RLG00000018848
rosa_multiflora	Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii	Rroxscaffold_2G00118710
rosa_rugosa	Rorug02G0255600
rosa_samantha	Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana	Rw2G025410

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	644
Acc16I	TGCGCA	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	1029
AccI	GTMKAC	1 cut(s)	651
AciI	CCGC	5 cut(s)	58, 553, 727, 821, 1034
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	3 cut(s)	81, 387, 700
AfaI	GTAC	2 cut(s)	770, 973
AfiI	CCNNNNNNNGG	3 cut(s)	280, 487, 501
AgeI	ACCGGT	1 cut(s)	589
AgsI	TTSAA	4 cut(s)	18, 562, 756, 907
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	101, 509, 883
AluI	AGCT	3 cut(s)	101, 509, 883
Alw21I	GWGCWC	2 cut(s)	511, 1067
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	625
ApeKI	GCWGC	5 cut(s)	6, 442, 696, 817, 987
ApoI	RAATTY	1 cut(s)	595
ArsI	GACNNNNNNTTYG	2 cut(s)	633, 665
AsiGI	ACCGGT	1 cut(s)	589
AspLEI	GCGC	3 cut(s)	424, 531, 701
AspS9I	GGNCC	1 cut(s)	478
AsuC2I	CCSGG	2 cut(s)	626, 627
AsuHPI	GGTGA	4 cut(s)	108, 146, 190, 573
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	1034
BanI	GGYRCC	1 cut(s)	1029
BanII	GRGCYC	2 cut(s)	139, 511
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	2 cut(s)	511, 1067
BbvI	GCAGC	4 cut(s)	454, 683, 804, 999
BccI	CCATC	2 cut(s)	469, 935
BceAI	ACGGC	1 cut(s)	952
BciT130I	CCWGG	1 cut(s)	337
BcnI	CCSGG	2 cut(s)	626, 627
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	519, 918
BglI	GCCNNNNNGGC	1 cut(s)	439
BisI	GCNGC	7 cut(s)	7, 443, 553, 697, 818, 821, 988
BlsI	GCNGC	7 cut(s)	8, 444, 554, 698, 819, 822, 989
Bme1390I	CCNGG	3 cut(s)	337, 626, 627
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	3 cut(s)	480, 856, 1031
BmrFI	CCNGG	3 cut(s)	337, 626, 627
BmrI	ACTGGG	1 cut(s)	760
BmuI	ACTGGG	1 cut(s)	760
BpiI	GAAGAC	1 cut(s)	642
BpuMI	CCSGG	2 cut(s)	626, 627
BsaJI	CCNNGG	4 cut(s)	336, 625, 626, 858
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 487, 501
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	3 cut(s)	660, 766, 809
Bse3DI	GCAATG	3 cut(s)	461, 896, 1036
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	4 cut(s)	336, 625, 626, 858
BseGI	GGATG	4 cut(s)	248, 714, 745, 950
BseLI	CCNNNNNNNGG	3 cut(s)	280, 487, 501
BseMI	GCAATG	3 cut(s)	461, 896, 1036
BseNI	ACTGG	3 cut(s)	660, 766, 809
BseRI	GAGGAG	4 cut(s)	103, 867, 875, 1039
BseSI	GKGCMC	1 cut(s)	1034
BseXI	GCAGC	4 cut(s)	454, 683, 804, 999
BshNI	GGYRCC	1 cut(s)	1029
BshTI	ACCGGT	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	511, 1067
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	590, 626
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	280, 487, 501
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	761
BsmI	GAATGC	1 cut(s)	793
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	4 cut(s)	139, 511, 1034, 1067
Bsp143I	GATC	2 cut(s)	283, 711
BspACI	CCGC	5 cut(s)	58, 553, 727, 821, 1034
BspLI	GGNNCC	3 cut(s)	480, 856, 1031
BspPI	GGATC	1 cut(s)	291
BspQI	GCTCTTC	2 cut(s)	16, 127
BspT107I	GGYRCC	1 cut(s)	1029
BsrDI	GCAATG	3 cut(s)	461, 896, 1036
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	3 cut(s)	660, 766, 809
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	4 cut(s)	336, 625, 626, 858
BssMI	GATC	2 cut(s)	283, 711
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	3 cut(s)	16, 127, 246
BstC8I	GCNNGC	3 cut(s)	468, 1034, 1072
BstF5I	GGATG	4 cut(s)	248, 714, 745, 950
BstHHI	GCGC	3 cut(s)	424, 531, 701
BstKTI	GATC	2 cut(s)	286, 714
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	283, 711
BstMWI	GCNNNNNNNGC	4 cut(s)	430, 439, 1038, 1071
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	3 cut(s)	335, 624, 625
BstSLI	GKGCMC	1 cut(s)	1034
BstV1I	GCAGC	4 cut(s)	454, 683, 804, 999
BstV2I	GAAGAC	1 cut(s)	642
BtsCI	GGATG	4 cut(s)	248, 714, 745, 950
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	3 cut(s)	411, 536, 816
Cac8I	GCNNGC	3 cut(s)	468, 1034, 1072
CfoI	GCGC	3 cut(s)	424, 531, 701
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	478
Cfr9I	CCCGGG	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	769, 972
CspAI	ACCGGT	1 cut(s)	589
CviQI	GTAC	2 cut(s)	769, 972
DpnI	GATC	2 cut(s)	285, 713
DpnII	GATC	2 cut(s)	283, 711
DrdI	GACNNNNNNGTC	1 cut(s)	644
DseDI	GACNNNNNNGTC	1 cut(s)	644
Eam1104I	CTCTTC	3 cut(s)	16, 127, 246
EarI	CTCTTC	3 cut(s)	16, 127, 246
Ecl136II	GAGCTC	1 cut(s)	509
Eco24I	GRGCYC	2 cut(s)	139, 511
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	3 cut(s)	81, 387, 700
Eco88I	CYCGRG	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	335
EcoT38I	GRGCYC	2 cut(s)	139, 511
FaiI	YATR	8 cut(s)	107, 213, 262, 347, 416, 439, 501, 846
FaqI	GGGAC	1 cut(s)	761
FauI	CCCGC	2 cut(s)	720, 1041
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	7 cut(s)	7, 443, 553, 697, 818, 821, 988
FokI	GGATG	4 cut(s)	235, 721, 752, 957
FriOI	GRGCYC	2 cut(s)	139, 511
Fsp4HI	GCNGC	7 cut(s)	7, 443, 553, 697, 818, 821, 988
FspBI	CTAG	2 cut(s)	519, 918
FspI	TGCGCA	1 cut(s)	530
GlaI	GCGC	3 cut(s)	423, 530, 700
GluI	GCNGC	7 cut(s)	7, 443, 553, 697, 818, 821, 988
HapII	CCGG	2 cut(s)	590, 626
HhaI	GCGC	3 cut(s)	424, 531, 701
Hin6I	GCGC	3 cut(s)	422, 529, 699
HinP1I	GCGC	3 cut(s)	422, 529, 699
HinfI	GANTC	5 cut(s)	320, 365, 458, 672, 761
HpaII	CCGG	2 cut(s)	590, 626
HphI	GGTGA	4 cut(s)	108, 146, 190, 573
Hpy166II	GTNNAC	2 cut(s)	652, 972
Hpy188I	TCNGA	4 cut(s)	131, 454, 677, 708
Hpy188III	TCNNGA	2 cut(s)	281, 317
Hpy8I	GTNNAC	2 cut(s)	652, 972
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	3 cut(s)	32, 255, 901
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	386, 784, 791, 1041
HpyF10VI	GCNNNNNNNGC	4 cut(s)	430, 439, 1038, 1071
HspAI	GCGC	3 cut(s)	422, 529, 699
Kzo9I	GATC	2 cut(s)	283, 711
LguI	GCTCTTC	2 cut(s)	16, 127
LmnI	GCTCC	2 cut(s)	419, 854
Lsp1109I	GCAGC	4 cut(s)	454, 683, 804, 999
MaeI	CTAG	2 cut(s)	519, 918
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	285, 713
MboI	GATC	2 cut(s)	283, 711
MhlI	GDGCHC	4 cut(s)	139, 511, 1034, 1067
MluCI	AATT	5 cut(s)	524, 562, 595, 841, 1019
MlyI	GAGTC	2 cut(s)	314, 755
MseI	TTAA	3 cut(s)	357, 546, 867
MslI	CAYNNNNRTG	1 cut(s)	755
MspI	CCGG	2 cut(s)	590, 626
MspR9I	CCNGG	3 cut(s)	337, 626, 627
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	4 cut(s)	430, 439, 1038, 1071
NciI	CCSGG	2 cut(s)	626, 627
NdeII	GATC	2 cut(s)	283, 711
NlaIV	GGNNCC	3 cut(s)	480, 856, 1031
NmeAIII	GCCGAG	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	530
PciSI	GCTCTTC	2 cut(s)	16, 127
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	3 cut(s)	365, 458, 672
PflFI	GACNNNGTC	1 cut(s)	323
PinAI	ACCGGT	1 cut(s)	589
PkrI	GCNGC	7 cut(s)	8, 444, 554, 698, 819, 822, 989
PleI	GAGTC	2 cut(s)	314, 755
PpsI	GAGTC	2 cut(s)	314, 755
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	480, 856, 1031
PspPI	GGNCC	1 cut(s)	478
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	2 cut(s)	770, 973
RsaNI	GTAC	2 cut(s)	769, 972
RseI	CAYNNNNRTG	1 cut(s)	755
SacI	GAGCTC	1 cut(s)	511
SapI	GCTCTTC	2 cut(s)	16, 127
SaqAI	TTAA	3 cut(s)	357, 546, 867
SatI	GCNGC	7 cut(s)	7, 443, 553, 697, 818, 821, 988
Sau3AI	GATC	2 cut(s)	283, 711
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	314, 755
ScrFI	CCNGG	3 cut(s)	337, 626, 627
SduI	GDGCHC	4 cut(s)	139, 511, 1034, 1067
SinI	GGWCC	1 cut(s)	478
SmaI	CCCGGG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	755
Sse9I	AATT	5 cut(s)	524, 562, 595, 841, 1019
SsiI	CCGC	5 cut(s)	58, 553, 727, 821, 1034
SspMI	CTAG	2 cut(s)	519, 918
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	3 cut(s)	335, 624, 625
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	231
TasI	AATT	5 cut(s)	524, 562, 595, 841, 1019
TatI	WGTACW	2 cut(s)	768, 971
TauI	GCSGC	2 cut(s)	555, 823
TfiI	GAWTC	3 cut(s)	365, 458, 672
Tru1I	TTAA	3 cut(s)	357, 546, 867
Tru9I	TTAA	3 cut(s)	357, 546, 867
TscAI	CASTG	3 cut(s)	411, 543, 816
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	5 cut(s)	6, 442, 696, 817, 987
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	140, 237, 378, 403, 1020
TspGWI	ACGGA	3 cut(s)	212, 313, 1065
TspMI	CCCGGG	1 cut(s)	625
TspRI	CASTG	3 cut(s)	411, 543, 816
Tth111I	GACNNNGTC	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	595
XmaI	CCCGGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	2 cut(s)	519, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.