Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016640

Physical Location & Seq

Genomic Coordinates Reverse (-)

40379095 .. 40380866

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG314000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGCTGCTCTTCTTCAACCCTTCGCACCAAAAACCACCCAGAACAACCACACCACCGCCCACAATCACAATGCTCTTGTTCTTGTTCTTCTTCTTCTTCTTCAGCTTCCATAAACTCCTCACTATTCCCACTCCGAAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAAAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCGTATCATCGACCACCCTCTTCCTTCATCCCCATTATCATACACCAATCTCCACAATCAGGATCAACCCCCAGACAAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTAACGATGAATCCCATTCTCATTATTCTTTTGCACAAAAACCACAATCTTCAGTGAAATTCATAGGAGCGCAAAAGAAGCCGCTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAGATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGGAAATTGCGCACAACACTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCACCAGCACCGGTAAATTCCAATTCCAATGCTTGTTTTTTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGGTTGCGGGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTGGAGGCAAAGCACCAGTGAGGCTGCCGCAAGTGTTTGTTAGAGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAATTGGCATTGCTTTTGAAGGGTTTTCCTAGTGCTTCTGCGTTTGGTTGTGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGTTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCTCTGCTTGCTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

363

Amino Acids

39.91

Weight (kDa)

8.86

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	218 - 286	8.7e-11	Glutaredoxin
GRXCR1-2_C	PF23733	316 - 362	2.3e-19	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41330 AT3G57070
malus_domestica	MD14G1084700.v1.1
prunus_persica	Prupe.7G043200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0125081
rosa_laevigata	RLG00000018848
rosa_multiflora	Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii	Rroxscaffold_2G00118710
rosa_rugosa	Rorug02G0255600
rosa_samantha	Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana	Rw2G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
Acc16I	TGCGCA	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	1038
AccI	GTMKAC	1 cut(s)	660
AciI	CCGC	6 cut(s)	58, 443, 562, 736, 830, 1043
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	419, 604
AcuI	CTGAAG	3 cut(s)	87, 396, 709
AfaI	GTAC	2 cut(s)	779, 982
AfiI	CCNNNNNNNGG	3 cut(s)	286, 496, 510
AgeI	ACCGGT	1 cut(s)	598
AgsI	TTSAA	4 cut(s)	18, 571, 765, 916
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	3 cut(s)	107, 518, 892
AluI	AGCT	3 cut(s)	107, 518, 892
Alw21I	GWGCWC	2 cut(s)	520, 1076
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	634
ApeKI	GCWGC	5 cut(s)	6, 451, 705, 826, 996
ApoI	RAATTY	2 cut(s)	419, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	642, 674
AsiGI	ACCGGT	1 cut(s)	598
AspLEI	GCGC	3 cut(s)	433, 540, 710
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	2 cut(s)	635, 636
AsuHPI	GGTGA	3 cut(s)	152, 196, 582
AvaI	CYCGRG	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	1043
BanI	GGYRCC	1 cut(s)	1038
BanII	GRGCYC	2 cut(s)	145, 520
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	520, 1076
BbvI	GCAGC	4 cut(s)	463, 692, 813, 1008
BccI	CCATC	2 cut(s)	478, 944
BceAI	ACGGC	1 cut(s)	961
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	635, 636
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	528, 927
BglI	GCCNNNNNGGC	1 cut(s)	448
BisI	GCNGC	8 cut(s)	7, 443, 452, 562, 706, 827, 830, 997
BlsI	GCNGC	8 cut(s)	8, 444, 453, 563, 707, 828, 831, 998
Bme1390I	CCNGG	3 cut(s)	343, 635, 636
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	3 cut(s)	489, 865, 1040
BmrFI	CCNGG	3 cut(s)	343, 635, 636
BmrI	ACTGGG	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	769
BpiI	GAAGAC	1 cut(s)	651
BpuMI	CCSGG	2 cut(s)	635, 636
BsaJI	CCNNGG	4 cut(s)	342, 634, 635, 867
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 496, 510
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	3 cut(s)	669, 775, 818
Bse3DI	GCAATG	3 cut(s)	470, 905, 1045
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	4 cut(s)	342, 634, 635, 867
BseGI	GGATG	4 cut(s)	254, 723, 754, 959
BseLI	CCNNNNNNNGG	3 cut(s)	286, 496, 510
BseMI	GCAATG	3 cut(s)	470, 905, 1045
BseNI	ACTGG	3 cut(s)	669, 775, 818
BseRI	GAGGAG	4 cut(s)	109, 876, 884, 1048
BseSI	GKGCMC	1 cut(s)	1043
BseXI	GCAGC	4 cut(s)	463, 692, 813, 1008
BshNI	GGYRCC	1 cut(s)	1038
BshTI	ACCGGT	1 cut(s)	598
BsiHKAI	GWGCWC	2 cut(s)	520, 1076
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	2 cut(s)	599, 635
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	3 cut(s)	286, 496, 510
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	1 cut(s)	802
BsoBI	CYCGRG	1 cut(s)	634
Bsp1286I	GDGCHC	4 cut(s)	145, 520, 1043, 1076
Bsp143I	GATC	2 cut(s)	289, 720
BspACI	CCGC	6 cut(s)	58, 443, 562, 736, 830, 1043
BspLI	GGNNCC	3 cut(s)	489, 865, 1040
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	2 cut(s)	16, 133
BspT107I	GGYRCC	1 cut(s)	1038
BsrDI	GCAATG	3 cut(s)	470, 905, 1045
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	3 cut(s)	669, 775, 818
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	4 cut(s)	342, 634, 635, 867
BssMI	GATC	2 cut(s)	289, 720
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	3 cut(s)	16, 133, 252
BstC8I	GCNNGC	3 cut(s)	477, 1043, 1081
BstF5I	GGATG	4 cut(s)	254, 723, 754, 959
BstHHI	GCGC	3 cut(s)	433, 540, 710
BstKTI	GATC	2 cut(s)	292, 723
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	2 cut(s)	289, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	439, 448, 451, 1047, 1080
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	341, 633, 634
BstSLI	GKGCMC	1 cut(s)	1043
BstV1I	GCAGC	4 cut(s)	463, 692, 813, 1008
BstV2I	GAAGAC	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	254, 723, 754, 959
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	3 cut(s)	420, 545, 825
Cac8I	GCNNGC	3 cut(s)	477, 1043, 1081
CfoI	GCGC	3 cut(s)	433, 540, 710
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	487
Cfr9I	CCCGGG	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	778, 981
CspAI	ACCGGT	1 cut(s)	598
CviQI	GTAC	2 cut(s)	778, 981
DpnI	GATC	2 cut(s)	291, 722
DpnII	GATC	2 cut(s)	289, 720
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
Eam1104I	CTCTTC	3 cut(s)	16, 133, 252
EarI	CTCTTC	3 cut(s)	16, 133, 252
Ecl136II	GAGCTC	1 cut(s)	518
Eco24I	GRGCYC	2 cut(s)	145, 520
Eco47I	GGWCC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	518
Eco57I	CTGAAG	3 cut(s)	87, 396, 709
Eco88I	CYCGRG	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	341
EcoT38I	GRGCYC	2 cut(s)	145, 520
FaiI	YATR	8 cut(s)	113, 219, 268, 353, 425, 448, 510, 855
FaqI	GGGAC	1 cut(s)	770
FauI	CCCGC	2 cut(s)	729, 1050
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	8 cut(s)	7, 443, 452, 562, 706, 827, 830, 997
FokI	GGATG	4 cut(s)	241, 730, 761, 966
FriOI	GRGCYC	2 cut(s)	145, 520
Fsp4HI	GCNGC	8 cut(s)	7, 443, 452, 562, 706, 827, 830, 997
FspBI	CTAG	2 cut(s)	528, 927
FspI	TGCGCA	1 cut(s)	539
GlaI	GCGC	3 cut(s)	432, 539, 709
GluI	GCNGC	8 cut(s)	7, 443, 452, 562, 706, 827, 830, 997
HapII	CCGG	2 cut(s)	599, 635
HhaI	GCGC	3 cut(s)	433, 540, 710
Hin6I	GCGC	3 cut(s)	431, 538, 708
HinP1I	GCGC	3 cut(s)	431, 538, 708
HinfI	GANTC	5 cut(s)	326, 371, 467, 681, 770
HpaII	CCGG	2 cut(s)	599, 635
HphI	GGTGA	3 cut(s)	152, 196, 582
Hpy166II	GTNNAC	2 cut(s)	661, 981
Hpy188I	TCNGA	4 cut(s)	137, 463, 686, 717
Hpy188III	TCNNGA	2 cut(s)	287, 323
Hpy8I	GTNNAC	2 cut(s)	661, 981
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	32, 261, 910
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	395, 793, 800, 1050
HpyF10VI	GCNNNNNNNGC	5 cut(s)	439, 448, 451, 1047, 1080
HspAI	GCGC	3 cut(s)	431, 538, 708
Kzo9I	GATC	2 cut(s)	289, 720
LguI	GCTCTTC	2 cut(s)	16, 133
LmnI	GCTCC	2 cut(s)	428, 863
Lsp1109I	GCAGC	4 cut(s)	463, 692, 813, 1008
MaeI	CTAG	2 cut(s)	528, 927
MalI	GATC	2 cut(s)	291, 722
MboI	GATC	2 cut(s)	289, 720
MhlI	GDGCHC	4 cut(s)	145, 520, 1043, 1076
MluCI	AATT	8 cut(s)	419, 533, 571, 604, 610, 850, 899, 1028
MlyI	GAGTC	2 cut(s)	320, 764
MmeI	TCCRAC	1 cut(s)	784
MseI	TTAA	3 cut(s)	363, 555, 876
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	2 cut(s)	599, 635
MspR9I	CCNGG	3 cut(s)	343, 635, 636
Mva1269I	GAATGC	1 cut(s)	802
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	5 cut(s)	439, 448, 451, 1047, 1080
NciI	CCSGG	2 cut(s)	635, 636
NdeII	GATC	2 cut(s)	289, 720
NlaIV	GGNNCC	3 cut(s)	489, 865, 1040
NmeAIII	GCCGAG	1 cut(s)	892
NsbI	TGCGCA	1 cut(s)	539
PciSI	GCTCTTC	2 cut(s)	16, 133
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PctI	GAATGC	1 cut(s)	802
PfeI	GAWTC	3 cut(s)	371, 467, 681
PflFI	GACNNNGTC	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	598
PkrI	GCNGC	8 cut(s)	8, 444, 453, 563, 707, 828, 831, 998
PleI	GAGTC	2 cut(s)	320, 764
PpsI	GAGTC	2 cut(s)	320, 764
Psp124BI	GAGCTC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	3 cut(s)	489, 865, 1040
PspPI	GGNCC	1 cut(s)	487
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	2 cut(s)	779, 982
RsaNI	GTAC	2 cut(s)	778, 981
RseI	CAYNNNNRTG	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	520
SapI	GCTCTTC	2 cut(s)	16, 133
SaqAI	TTAA	3 cut(s)	363, 555, 876
SatI	GCNGC	8 cut(s)	7, 443, 452, 562, 706, 827, 830, 997
Sau3AI	GATC	2 cut(s)	289, 720
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	320, 764
ScrFI	CCNGG	3 cut(s)	343, 635, 636
SduI	GDGCHC	4 cut(s)	145, 520, 1043, 1076
SinI	GGWCC	1 cut(s)	487
SmaI	CCCGGG	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	764
Sse9I	AATT	8 cut(s)	419, 533, 571, 604, 610, 850, 899, 1028
SsiI	CCGC	6 cut(s)	58, 443, 562, 736, 830, 1043
SspMI	CTAG	2 cut(s)	528, 927
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	341, 633, 634
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	237
TasI	AATT	8 cut(s)	419, 533, 571, 604, 610, 850, 899, 1028
TatI	WGTACW	2 cut(s)	777, 980
TauI	GCSGC	3 cut(s)	445, 564, 832
TfiI	GAWTC	3 cut(s)	371, 467, 681
Tru1I	TTAA	3 cut(s)	363, 555, 876
Tru9I	TTAA	3 cut(s)	363, 555, 876
TscAI	CASTG	3 cut(s)	420, 552, 825
TseI	GCWGC	5 cut(s)	6, 451, 705, 826, 996
TspDTI	ATGAA	5 cut(s)	146, 243, 384, 412, 1029
TspGWI	ACGGA	3 cut(s)	218, 319, 1074
TspMI	CCCGGG	1 cut(s)	634
TspRI	CASTG	3 cut(s)	420, 552, 825
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	419, 604
XmaI	CCCGGG	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	2 cut(s)	528, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.