Rroxscaffold_2G00118710

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016640
Physical Location & Seq
Forward (+)
50451922 .. 50453013
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118710.1

Sequence Viewer

Length: 1092 bp
ATGGGCTGCTCTTCTTCAATCCTTCGCACCAAAAACCACCCAGAACAACCACACCACCGCCCACAATCACAATGTTCTTCTTCTTCTTCTTCTTCAGCTTCCATAAACTCCTCACCATTCCCACTCCGAAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAAAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCGTATCATCGACCACCCTCTTCCTTCATCCCCATTATCATACACCAATCTCCACAGTCAGGATCAACCCCCAGACAAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTGACGATGAATCCCATTCTCATTCTTTTGCACAAAAACCACAATCTTCAGTGAAATTCAGAGGAGAGCAAAAGAAGCCGCTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAGATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGGAAATTGCGCACAACACTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCTTCTTCTTCTTCACCAGCACCTGTAAATTCCAATACCAATACTTGTTTTCTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGTTTGCGGGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTAGAGGCAAAGCACCAGTGAGGCTGCCGCAAGTGTTTGTTAGAGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAATTGGCATTGCTTTTGAAGGGTTTTCCTAGTGCTTCTGCGTTTGGTTGTGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGCTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCCCTGCTTGCTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

363

Amino Acids

40.0

Weight (kDa)

8.93

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 218 - 286 9.5e-11 Glutaredoxin
GRXCR1-2_C PF23733 316 - 362 3e-20 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
Acc16I TGCGCA 1 cut(s) 527
AccB1I GGYRCC 2 cut(s) 1038, 1071
AccI GTMKAC 1 cut(s) 660
AciI CCGC 6 cut(s) 58, 431, 550, 736, 830, 1043
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 2 cut(s) 407, 604
AcuI CTGAAG 3 cut(s) 78, 384, 709
AfaI GTAC 2 cut(s) 779, 982
AfiI CCNNNNNNNGG 3 cut(s) 277, 484, 498
AgsI TTSAA 4 cut(s) 18, 559, 765, 916
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 4 cut(s) 98, 506, 892, 1006
AluI AGCT 4 cut(s) 98, 506, 892, 1006
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 634
ApeKI GCWGC 5 cut(s) 6, 439, 705, 826, 996
ApoI RAATTY 2 cut(s) 407, 604
ArsI GACNNNNNNTTYG 2 cut(s) 642, 674
AspLEI GCGC 2 cut(s) 528, 710
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 2 cut(s) 635, 636
AsuHPI GGTGA 4 cut(s) 105, 143, 187, 582
AvaI CYCGRG 1 cut(s) 634
AvaII GGWCC 1 cut(s) 475
BaeGI GKGCMC 2 cut(s) 1043, 1076
BanI GGYRCC 2 cut(s) 1038, 1071
BanII GRGCYC 2 cut(s) 136, 508
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 4 cut(s) 451, 692, 813, 1008
BccI CCATC 2 cut(s) 466, 944
BceAI ACGGC 1 cut(s) 961
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 2 cut(s) 635, 636
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 2 cut(s) 516, 927
BglI GCCNNNNNGGC 1 cut(s) 436
BisI GCNGC 8 cut(s) 7, 431, 440, 550, 706, 827, 830, 997
BlsI GCNGC 8 cut(s) 8, 432, 441, 551, 707, 828, 831, 998
Bme1390I CCNGG 3 cut(s) 334, 635, 636
Bme18I GGWCC 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 4 cut(s) 477, 865, 1040, 1073
BmrFI CCNGG 3 cut(s) 334, 635, 636
BmrI ACTGGG 1 cut(s) 769
BmuI ACTGGG 1 cut(s) 769
BpiI GAAGAC 1 cut(s) 651
BpuMI CCSGG 2 cut(s) 635, 636
BsaJI CCNNGG 4 cut(s) 333, 634, 635, 867
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 484, 498
Bse1I ACTGG 3 cut(s) 669, 775, 818
Bse3DI GCAATG 3 cut(s) 458, 905, 1045
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 4 cut(s) 333, 634, 635, 867
BseGI GGATG 4 cut(s) 245, 723, 754, 959
BseLI CCNNNNNNNGG 3 cut(s) 277, 484, 498
BseMI GCAATG 3 cut(s) 458, 905, 1045
BseNI ACTGG 3 cut(s) 669, 775, 818
BseRI GAGGAG 5 cut(s) 100, 429, 876, 884, 1048
BseSI GKGCMC 2 cut(s) 1043, 1076
BseXI GCAGC 4 cut(s) 451, 692, 813, 1008
BshNI GGYRCC 2 cut(s) 1038, 1071
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 634
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 3 cut(s) 277, 484, 498
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 1 cut(s) 802
BsoBI CYCGRG 1 cut(s) 634
Bsp1286I GDGCHC 4 cut(s) 136, 508, 1043, 1076
Bsp143I GATC 2 cut(s) 280, 720
BspACI CCGC 6 cut(s) 58, 431, 550, 736, 830, 1043
BspLI GGNNCC 4 cut(s) 477, 865, 1040, 1073
BspPI GGATC 1 cut(s) 288
BspQI GCTCTTC 2 cut(s) 16, 124
BspT107I GGYRCC 2 cut(s) 1038, 1071
BsrDI GCAATG 3 cut(s) 458, 905, 1045
BsrI ACTGG 3 cut(s) 669, 775, 818
BssECI CCNNGG 4 cut(s) 333, 634, 635, 867
BssMI GATC 2 cut(s) 280, 720
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 275, 350
Bst6I CTCTTC 3 cut(s) 16, 124, 243
BstC8I GCNNGC 3 cut(s) 465, 1043, 1081
BstF5I GGATG 4 cut(s) 245, 723, 754, 959
BstHHI GCGC 2 cut(s) 528, 710
BstKTI GATC 2 cut(s) 283, 723
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 280, 720
BstMWI GCNNNNNNNGC 5 cut(s) 427, 436, 439, 1047, 1080
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 3 cut(s) 332, 633, 634
BstSLI GKGCMC 2 cut(s) 1043, 1076
BstV1I GCAGC 4 cut(s) 451, 692, 813, 1008
BstV2I GAAGAC 1 cut(s) 651
BtsCI GGATG 4 cut(s) 245, 723, 754, 959
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 3 cut(s) 408, 533, 825
Cac8I GCNNGC 3 cut(s) 465, 1043, 1081
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 2 cut(s) 528, 710
Cfr13I GGNCC 1 cut(s) 475
Cfr9I CCCGGG 1 cut(s) 634
Csp6I GTAC 2 cut(s) 778, 981
CviQI GTAC 2 cut(s) 778, 981
DpnI GATC 2 cut(s) 282, 722
DpnII GATC 2 cut(s) 280, 720
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 3 cut(s) 16, 124, 243
EarI CTCTTC 3 cut(s) 16, 124, 243
Ecl136II GAGCTC 1 cut(s) 506
Eco24I GRGCYC 2 cut(s) 136, 508
Eco47I GGWCC 1 cut(s) 475
Eco53kI GAGCTC 1 cut(s) 506
Eco57I CTGAAG 3 cut(s) 78, 384, 709
Eco88I CYCGRG 1 cut(s) 634
EcoICRI GAGCTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 332
EcoT38I GRGCYC 2 cut(s) 136, 508
FaiI YATR 7 cut(s) 104, 210, 259, 344, 436, 498, 855
FaqI GGGAC 1 cut(s) 770
FauI CCCGC 2 cut(s) 729, 1050
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 8 cut(s) 7, 431, 440, 550, 706, 827, 830, 997
FokI GGATG 4 cut(s) 232, 730, 761, 966
FriOI GRGCYC 2 cut(s) 136, 508
Fsp4HI GCNGC 8 cut(s) 7, 431, 440, 550, 706, 827, 830, 997
FspBI CTAG 2 cut(s) 516, 927
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 2 cut(s) 527, 709
GluI GCNGC 8 cut(s) 7, 431, 440, 550, 706, 827, 830, 997
HapII CCGG 1 cut(s) 635
HhaI GCGC 2 cut(s) 528, 710
Hin6I GCGC 2 cut(s) 526, 708
HinP1I GCGC 2 cut(s) 526, 708
HinfI GANTC 5 cut(s) 317, 362, 455, 681, 770
HpaII CCGG 1 cut(s) 635
HphI GGTGA 4 cut(s) 105, 143, 187, 582
Hpy166II GTNNAC 2 cut(s) 661, 981
Hpy188I TCNGA 5 cut(s) 128, 413, 451, 686, 717
Hpy188III TCNNGA 3 cut(s) 278, 314, 353
Hpy8I GTNNAC 2 cut(s) 661, 981
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 3 cut(s) 32, 252, 910
HpyCH4III ACNGT 2 cut(s) 275, 350
HpyCH4V TGCA 4 cut(s) 383, 793, 800, 1050
HpyF10VI GCNNNNNNNGC 5 cut(s) 427, 436, 439, 1047, 1080
HspAI GCGC 2 cut(s) 526, 708
Kzo9I GATC 2 cut(s) 280, 720
LguI GCTCTTC 2 cut(s) 16, 124
LmnI GCTCC 1 cut(s) 863
Lsp1109I GCAGC 4 cut(s) 451, 692, 813, 1008
MaeI CTAG 2 cut(s) 516, 927
MalI GATC 2 cut(s) 282, 722
MboI GATC 2 cut(s) 280, 720
MhlI GDGCHC 4 cut(s) 136, 508, 1043, 1076
MluCI AATT 7 cut(s) 407, 521, 559, 604, 850, 899, 1028
MlyI GAGTC 2 cut(s) 311, 764
MseI TTAA 2 cut(s) 543, 876
MslI CAYNNNNRTG 1 cut(s) 764
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 3 cut(s) 334, 635, 636
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 5 cut(s) 427, 436, 439, 1047, 1080
NciI CCSGG 2 cut(s) 635, 636
NdeII GATC 2 cut(s) 280, 720
NlaIV GGNNCC 4 cut(s) 477, 865, 1040, 1073
NmeAIII GCCGAG 1 cut(s) 892
NsbI TGCGCA 1 cut(s) 527
PciSI GCTCTTC 2 cut(s) 16, 124
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PctI GAATGC 1 cut(s) 802
PfeI GAWTC 3 cut(s) 362, 455, 681
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 8 cut(s) 8, 432, 441, 551, 707, 828, 831, 998
PleI GAGTC 2 cut(s) 311, 764
PpsI GAGTC 2 cut(s) 311, 764
Psp124BI GAGCTC 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 4 cut(s) 477, 865, 1040, 1073
PspPI GGNCC 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 599
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 2 cut(s) 779, 982
RsaNI GTAC 2 cut(s) 778, 981
RseI CAYNNNNRTG 1 cut(s) 764
SacI GAGCTC 1 cut(s) 508
SapI GCTCTTC 2 cut(s) 16, 124
SaqAI TTAA 2 cut(s) 543, 876
SatI GCNGC 8 cut(s) 7, 431, 440, 550, 706, 827, 830, 997
Sau3AI GATC 2 cut(s) 280, 720
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 2 cut(s) 311, 764
ScrFI CCNGG 3 cut(s) 334, 635, 636
SduI GDGCHC 4 cut(s) 136, 508, 1043, 1076
SinI GGWCC 1 cut(s) 475
SmaI CCCGGG 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 764
Sse9I AATT 7 cut(s) 407, 521, 559, 604, 850, 899, 1028
SsiI CCGC 6 cut(s) 58, 431, 550, 736, 830, 1043
SspMI CTAG 2 cut(s) 516, 927
SstI GAGCTC 1 cut(s) 508
StyD4I CCNGG 3 cut(s) 332, 633, 634
TaaI ACNGT 2 cut(s) 275, 350
TaqI TCGA 1 cut(s) 228
TasI AATT 7 cut(s) 407, 521, 559, 604, 850, 899, 1028
TatI WGTACW 2 cut(s) 777, 980
TauI GCSGC 3 cut(s) 433, 552, 832
TfiI GAWTC 3 cut(s) 362, 455, 681
Tru1I TTAA 2 cut(s) 543, 876
Tru9I TTAA 2 cut(s) 543, 876
TscAI CASTG 3 cut(s) 408, 540, 825
TseI GCWGC 5 cut(s) 6, 439, 705, 826, 996
TspDTI ATGAA 4 cut(s) 137, 234, 375, 1029
TspGWI ACGGA 3 cut(s) 209, 310, 1074
TspMI CCCGGG 1 cut(s) 634
TspRI CASTG 3 cut(s) 408, 540, 825
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 2 cut(s) 407, 604
XmaI CCCGGG 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 516, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.