Rw2G025410

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0016640
Physical Location & Seq
Reverse (-)
37910686 .. 37911762
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G025410.1

Sequence Viewer

Length: 1005 bp
ATGGGCTGCTCTTCTTCAACCCTTCGCACCAAAAACCACCCAGAACAACCACAATCACAATGCTCTTGTTCTTGTTCTTCTTCTTCTTCTTCAGCTTCCATAAACTCCTCACCATTCCCACTCCGAAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAAAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCACAAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTAACGATGAATCCCATTCTCATTCTTTTGCACAAAAACCACAATCTTCAGTGAAATTCACAGGAGCGCAAAAGAAGCCGCTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAGATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGCAAATTGCGCACAACACTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCACCAGCACCGGTAAATTCCAATTCCAATGCTTGTTTTTTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGTTTGCGGGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTAGAGGTAAAGCACCAGTGAGGCTGCCGCAAGTGTTTGTTAGAGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAATTGGCATTGCTTTTGAAGGGTTTTCCTAGTGCTTCTGCGTTTGGTTGTGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGTTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCTCTGCTTGCTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

334

Amino Acids

36.53

Weight (kDa)

8.94

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 189 - 257 8.3e-11 Glutaredoxin
GRXCR1-2_C PF23733 287 - 333 2.1e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 566
Acc16I TGCGCA 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 951
AccI GTMKAC 1 cut(s) 573
AciI CCGC 5 cut(s) 356, 475, 649, 743, 956
AcsI RAATTY 2 cut(s) 332, 517
AcuI CTGAAG 3 cut(s) 75, 309, 622
AfaI GTAC 2 cut(s) 692, 895
AfiI CCNNNNNNNGG 2 cut(s) 409, 423
AgeI ACCGGT 1 cut(s) 511
AgsI TTSAA 4 cut(s) 18, 484, 678, 829
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 3 cut(s) 95, 431, 805
AluI AGCT 3 cut(s) 95, 431, 805
Alw21I GWGCWC 2 cut(s) 433, 989
Alw26I GTCTC 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 547
ApeKI GCWGC 5 cut(s) 6, 364, 618, 739, 909
ApoI RAATTY 2 cut(s) 332, 517
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
AsiGI ACCGGT 1 cut(s) 511
AspLEI GCGC 3 cut(s) 346, 453, 623
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 2 cut(s) 548, 549
AsuHPI GGTGA 4 cut(s) 102, 140, 184, 495
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 1 cut(s) 400
BaeGI GKGCMC 1 cut(s) 956
BanI GGYRCC 1 cut(s) 951
BanII GRGCYC 2 cut(s) 133, 433
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 433, 989
BbvI GCAGC 4 cut(s) 376, 605, 726, 921
BccI CCATC 2 cut(s) 391, 857
BceAI ACGGC 1 cut(s) 874
BciT130I CCWGG 1 cut(s) 259
BcnI CCSGG 2 cut(s) 548, 549
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 2 cut(s) 441, 840
BglI GCCNNNNNGGC 1 cut(s) 361
BisI GCNGC 8 cut(s) 7, 356, 365, 475, 619, 740, 743, 910
BlsI GCNGC 8 cut(s) 8, 357, 366, 476, 620, 741, 744, 911
Bme1390I CCNGG 3 cut(s) 259, 548, 549
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 3 cut(s) 402, 778, 953
BmrFI CCNGG 3 cut(s) 259, 548, 549
BmrI ACTGGG 1 cut(s) 682
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 564
BpuMI CCSGG 2 cut(s) 548, 549
BsaJI CCNNGG 4 cut(s) 258, 547, 548, 780
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 423
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 3 cut(s) 582, 688, 731
Bse3DI GCAATG 3 cut(s) 383, 818, 958
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 258, 547, 548, 780
BseGI GGATG 3 cut(s) 636, 667, 872
BseLI CCNNNNNNNGG 2 cut(s) 409, 423
BseMI GCAATG 3 cut(s) 383, 818, 958
BseNI ACTGG 3 cut(s) 582, 688, 731
BseRI GAGGAG 4 cut(s) 97, 789, 797, 961
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 4 cut(s) 376, 605, 726, 921
BshNI GGYRCC 1 cut(s) 951
BshTI ACCGGT 1 cut(s) 511
BsiHKAI GWGCWC 2 cut(s) 433, 989
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 2 cut(s) 512, 548
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 2 cut(s) 409, 423
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 683
BsmI GAATGC 1 cut(s) 715
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 4 cut(s) 133, 433, 956, 989
Bsp143I GATC 1 cut(s) 633
BspACI CCGC 5 cut(s) 356, 475, 649, 743, 956
BspLI GGNNCC 3 cut(s) 402, 778, 953
BspQI GCTCTTC 2 cut(s) 16, 121
BspT107I GGYRCC 1 cut(s) 951
BsrDI GCAATG 3 cut(s) 383, 818, 958
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 3 cut(s) 582, 688, 731
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 4 cut(s) 258, 547, 548, 780
BssMI GATC 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 2 cut(s) 16, 121
BstC8I GCNNGC 3 cut(s) 390, 956, 994
BstF5I GGATG 3 cut(s) 636, 667, 872
BstHHI GCGC 3 cut(s) 346, 453, 623
BstKTI GATC 1 cut(s) 636
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 633
BstMWI GCNNNNNNNGC 6 cut(s) 352, 361, 364, 450, 960, 993
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 3 cut(s) 257, 546, 547
BstSLI GKGCMC 1 cut(s) 956
BstV1I GCAGC 4 cut(s) 376, 605, 726, 921
BstV2I GAAGAC 1 cut(s) 564
BtsCI GGATG 3 cut(s) 636, 667, 872
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 3 cut(s) 333, 458, 738
Cac8I GCNNGC 3 cut(s) 390, 956, 994
CfoI GCGC 3 cut(s) 346, 453, 623
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 400
Cfr9I CCCGGG 1 cut(s) 547
Csp6I GTAC 2 cut(s) 691, 894
CspAI ACCGGT 1 cut(s) 511
CviQI GTAC 2 cut(s) 691, 894
DpnI GATC 1 cut(s) 635
DpnII GATC 1 cut(s) 633
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
Eam1104I CTCTTC 2 cut(s) 16, 121
EarI CTCTTC 2 cut(s) 16, 121
Ecl136II GAGCTC 1 cut(s) 431
Eco24I GRGCYC 2 cut(s) 133, 433
Eco47I GGWCC 1 cut(s) 400
Eco53kI GAGCTC 1 cut(s) 431
Eco57I CTGAAG 3 cut(s) 75, 309, 622
Eco88I CYCGRG 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 257
EcoT38I GRGCYC 2 cut(s) 133, 433
FaiI YATR 6 cut(s) 101, 207, 269, 361, 423, 768
FaqI GGGAC 1 cut(s) 683
FauI CCCGC 2 cut(s) 642, 963
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 8 cut(s) 7, 356, 365, 475, 619, 740, 743, 910
FokI GGATG 3 cut(s) 643, 674, 879
FriOI GRGCYC 2 cut(s) 133, 433
Fsp4HI GCNGC 8 cut(s) 7, 356, 365, 475, 619, 740, 743, 910
FspBI CTAG 2 cut(s) 441, 840
FspI TGCGCA 1 cut(s) 452
GlaI GCGC 3 cut(s) 345, 452, 622
GluI GCNGC 8 cut(s) 7, 356, 365, 475, 619, 740, 743, 910
HapII CCGG 2 cut(s) 512, 548
HhaI GCGC 3 cut(s) 346, 453, 623
Hin6I GCGC 3 cut(s) 344, 451, 621
HinP1I GCGC 3 cut(s) 344, 451, 621
HinfI GANTC 5 cut(s) 242, 287, 380, 594, 683
HpaII CCGG 2 cut(s) 512, 548
HphI GGTGA 4 cut(s) 102, 140, 184, 495
Hpy166II GTNNAC 2 cut(s) 574, 894
Hpy188I TCNGA 4 cut(s) 125, 376, 599, 630
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 574, 894
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 2 cut(s) 32, 823
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 308, 706, 713, 963
HpyF10VI GCNNNNNNNGC 6 cut(s) 352, 361, 364, 450, 960, 993
HspAI GCGC 3 cut(s) 344, 451, 621
Kzo9I GATC 1 cut(s) 633
LguI GCTCTTC 2 cut(s) 16, 121
LmnI GCTCC 2 cut(s) 341, 776
Lsp1109I GCAGC 4 cut(s) 376, 605, 726, 921
MaeI CTAG 2 cut(s) 441, 840
MalI GATC 1 cut(s) 635
MboI GATC 1 cut(s) 633
MhlI GDGCHC 4 cut(s) 133, 433, 956, 989
MluCI AATT 8 cut(s) 332, 446, 484, 517, 523, 763, 812, 941
MlyI GAGTC 2 cut(s) 236, 677
MseI TTAA 3 cut(s) 279, 468, 789
MslI CAYNNNNRTG 1 cut(s) 677
MspI CCGG 2 cut(s) 512, 548
MspR9I CCNGG 3 cut(s) 259, 548, 549
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 6 cut(s) 352, 361, 364, 450, 960, 993
NciI CCSGG 2 cut(s) 548, 549
NdeII GATC 1 cut(s) 633
NlaIV GGNNCC 3 cut(s) 402, 778, 953
NmeAIII GCCGAG 1 cut(s) 805
NsbI TGCGCA 1 cut(s) 452
PciSI GCTCTTC 2 cut(s) 16, 121
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 287, 380, 594
PflFI GACNNNGTC 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 511
PkrI GCNGC 8 cut(s) 8, 357, 366, 476, 620, 741, 744, 911
PleI GAGTC 2 cut(s) 236, 677
PpsI GAGTC 2 cut(s) 236, 677
Psp124BI GAGCTC 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 3 cut(s) 402, 778, 953
PspPI GGNCC 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 2 cut(s) 692, 895
RsaNI GTAC 2 cut(s) 691, 894
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 433
SapI GCTCTTC 2 cut(s) 16, 121
SaqAI TTAA 3 cut(s) 279, 468, 789
SatI GCNGC 8 cut(s) 7, 356, 365, 475, 619, 740, 743, 910
Sau3AI GATC 1 cut(s) 633
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 2 cut(s) 236, 677
ScrFI CCNGG 3 cut(s) 259, 548, 549
SduI GDGCHC 4 cut(s) 133, 433, 956, 989
SinI GGWCC 1 cut(s) 400
SmaI CCCGGG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 8 cut(s) 332, 446, 484, 517, 523, 763, 812, 941
SsiI CCGC 5 cut(s) 356, 475, 649, 743, 956
SspMI CTAG 2 cut(s) 441, 840
SstI GAGCTC 1 cut(s) 433
StyD4I CCNGG 3 cut(s) 257, 546, 547
TaaI ACNGT 1 cut(s) 275
TasI AATT 8 cut(s) 332, 446, 484, 517, 523, 763, 812, 941
TatI WGTACW 2 cut(s) 690, 893
TauI GCSGC 3 cut(s) 358, 477, 745
TfiI GAWTC 3 cut(s) 287, 380, 594
Tru1I TTAA 3 cut(s) 279, 468, 789
Tru9I TTAA 3 cut(s) 279, 468, 789
TscAI CASTG 3 cut(s) 333, 465, 738
TseI GCWGC 5 cut(s) 6, 364, 618, 739, 909
TspDTI ATGAA 3 cut(s) 134, 300, 942
TspGWI ACGGA 2 cut(s) 235, 987
TspMI CCCGGG 1 cut(s) 547
TspRI CASTG 3 cut(s) 333, 465, 738
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 2 cut(s) 332, 517
XmaI CCCGGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 2 cut(s) 441, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.