Rmu_sc0003505.1_g000023

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003505.1
OG0016640
Physical Location & Seq
Reverse (-)
110416 .. 112510
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003505.1_g000023.1.cds

Sequence Viewer

Length: 1413 bp
atgggctgctcttcttcaacccttcgcaccaaaaaccacccagaacaaccacaccaccgcccacaatcacaatgctcttgttcttcttcttcttcttcttcttcagcttccataaactcctcaccattcccactccgaagagccctctctcttgttcatcacccacctctcaaaaagggcgacaccaaccaccttgtctctctcacctccaccacttatggttctctccgtatcatcgaccaccctcttccttcatccccattatcatacaccaatctccacagtcaggaccaacccccagacaagtcctcatctttttctcccgactccgtcatcaacacctgggaacttatggacggtcttaacgatgaatcccattctccttcttttgcacaaaaaccacaatcttcagtgaaattcataggagcgcaaaagaagccgctatggcagcatttatcagaggaatcattgctggcaaagatggaccccaatgtggtttccacttataggagagctctatcttctagcaaattgcgcacaacactgccttttaagagccgccctttgaattgttctacttcttcttcaccagcaccggtaaattccaattccaatgcttgttttcttctcccgggaagtgaagacaaaatcgtcgtctactccaccagtttgagaggaatccgaaagacttacgaggattgctgcgctgttcggatgatcttcaggggtttgcgggtggctgtggatgagagggacatttcaatggactcccagtacaagaaagagttgcagaatgcagttagaggcaaagcaccagtgaggctgccgcaagtgtttgttagagggaattatattggaggagccgaggaggttaagcaactcaatgagcttggagaattggcattgcttttgaagggttttcctagtgcttctgcgtttggttgtgatggatgtggagatgtgagatttgtgccgtgtactacctgtaatggcagccaaaagttgtttgatgaaaacaaaggggaattgaggaggtgcccgcattgcaacgagaacggattgattaggagagctctatcttctagcaaattgcgcacaacactgccttttaagagccgccctttgaattgttctacttcttcttcaccagcaccggtaaattccaattccaatgcttgttttcttctcccggggagtgaagacaaaatcgtcgtctactccaccagtttgagaggaatccgaaagacttacgaggattgctgcgctgttcggatgatcttcaggggtttgcgggtggctgtggatgagagggacatttcaatggactcccagtacaagaaagagttgcagaatgcagttagaggctggttaattaagtgctgttcaagacaactagtactgcagaaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

470

Amino Acids

51.87

Weight (kDa)

9.25

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 650, 1208
Acc16I TGCGCA 2 cut(s) 536, 1094
AccB1I GGYRCC 1 cut(s) 1035
AccI GTMKAC 2 cut(s) 657, 1215
AciI CCGC 8 cut(s) 58, 440, 559, 733, 827, 1040, 1117, 1291
AcsI RAATTY 3 cut(s) 416, 601, 1159
AcuI CTGAAG 4 cut(s) 87, 393, 706, 1264
AfaI GTAC 4 cut(s) 776, 979, 1334, 1398
AfiI CCNNNNNNNGG 3 cut(s) 286, 493, 507
AgeI ACCGGT 2 cut(s) 595, 1153
AgsI TTSAA 7 cut(s) 18, 568, 762, 913, 1126, 1320, 1386
AhlI ACTAGT 1 cut(s) 1393
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 4 cut(s) 107, 515, 889, 1073
AluI AGCT 4 cut(s) 107, 515, 889, 1073
Alw21I GWGCWC 2 cut(s) 517, 1075
Alw26I GTCTC 1 cut(s) 202
Ama87I CYCGRG 2 cut(s) 631, 1189
ApeKI GCWGC 6 cut(s) 6, 448, 702, 823, 993, 1260
ApoI RAATTY 3 cut(s) 416, 601, 1159
ArsI GACNNNNNNTTYG 4 cut(s) 639, 671, 1197, 1229
AsiGI ACCGGT 2 cut(s) 595, 1153
AspLEI GCGC 5 cut(s) 430, 537, 707, 1095, 1265
AspS9I GGNCC 2 cut(s) 289, 484
AsuC2I CCSGG 4 cut(s) 632, 633, 1190, 1191
AsuHPI GGTGA 5 cut(s) 114, 152, 196, 579, 1137
AvaI CYCGRG 2 cut(s) 631, 1189
AvaII GGWCC 2 cut(s) 289, 484
BaeGI GKGCMC 1 cut(s) 1040
BanI GGYRCC 1 cut(s) 1035
BanII GRGCYC 3 cut(s) 145, 517, 1075
BbsI GAAGAC 2 cut(s) 648, 1206
Bbv12I GWGCWC 2 cut(s) 517, 1075
BbvI GCAGC 5 cut(s) 460, 689, 810, 1005, 1247
BccI CCATC 2 cut(s) 475, 941
BceAI ACGGC 1 cut(s) 958
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 4 cut(s) 632, 633, 1190, 1191
BcoDI GTCTC 1 cut(s) 202
BcuI ACTAGT 1 cut(s) 1393
BfaI CTAG 4 cut(s) 525, 924, 1083, 1394
BfmI CTRYAG 1 cut(s) 1400
BglI GCCNNNNNGGC 1 cut(s) 445
BmcAI AGTACT 1 cut(s) 1398
Bme1390I CCNGG 5 cut(s) 343, 632, 633, 1190, 1191
Bme18I GGWCC 2 cut(s) 289, 484
BmeT110I CYCGRG 2 cut(s) 631, 1189
BmgT120I GGNCC 2 cut(s) 289, 484
BmiI GGNNCC 3 cut(s) 486, 862, 1037
BmrFI CCNGG 5 cut(s) 343, 632, 633, 1190, 1191
BmrI ACTGGG 2 cut(s) 766, 1324
BmuI ACTGGG 2 cut(s) 766, 1324
BpiI GAAGAC 2 cut(s) 648, 1206
BpuMI CCSGG 4 cut(s) 632, 633, 1190, 1191
BsaJI CCNNGG 5 cut(s) 342, 631, 864, 1189, 1190
BsaWI WCCGGW 2 cut(s) 595, 1153
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 493, 507
Bse118I RCCGGY 2 cut(s) 595, 1153
Bse1I ACTGG 5 cut(s) 666, 772, 815, 1224, 1330
Bse3DI GCAATG 3 cut(s) 467, 902, 1042
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 5 cut(s) 342, 631, 864, 1189, 1190
BseGI GGATG 6 cut(s) 254, 720, 751, 956, 1278, 1309
BseLI CCNNNNNNNGG 3 cut(s) 286, 493, 507
BseMI GCAATG 3 cut(s) 467, 902, 1042
BseNI ACTGG 5 cut(s) 666, 772, 815, 1224, 1330
BseRI GAGGAG 4 cut(s) 109, 873, 881, 1045
BseSI GKGCMC 1 cut(s) 1040
BseXI GCAGC 5 cut(s) 460, 689, 810, 1005, 1247
BshNI GGYRCC 1 cut(s) 1035
BshTI ACCGGT 2 cut(s) 595, 1153
BsiHKAI GWGCWC 2 cut(s) 517, 1075
BsiHKCI CYCGRG 2 cut(s) 631, 1189
BsiSI CCGG 4 cut(s) 596, 632, 1154, 1190
BslFI GGGAC 2 cut(s) 767, 1325
BslI CCNNNNNNNGG 3 cut(s) 286, 493, 507
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 767, 1325
BsmI GAATGC 2 cut(s) 799, 1357
BsoBI CYCGRG 2 cut(s) 631, 1189
Bsp1286I GDGCHC 4 cut(s) 145, 517, 1040, 1075
Bsp143I GATC 2 cut(s) 717, 1275
BspACI CCGC 8 cut(s) 58, 440, 559, 733, 827, 1040, 1117, 1291
BspLI GGNNCC 3 cut(s) 486, 862, 1037
BspMAI CTGCAG 1 cut(s) 1404
BspQI GCTCTTC 2 cut(s) 16, 133
BspT107I GGYRCC 1 cut(s) 1035
BsrDI GCAATG 3 cut(s) 467, 902, 1042
BsrFI RCCGGY 2 cut(s) 595, 1153
BsrI ACTGG 5 cut(s) 666, 772, 815, 1224, 1330
BssAI RCCGGY 2 cut(s) 595, 1153
BssECI CCNNGG 5 cut(s) 342, 631, 864, 1189, 1190
BssMI GATC 2 cut(s) 717, 1275
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 284, 359
Bst6I CTCTTC 3 cut(s) 16, 133, 252
BstC8I GCNNGC 2 cut(s) 474, 1040
BstF5I GGATG 6 cut(s) 254, 720, 751, 956, 1278, 1309
BstHHI GCGC 5 cut(s) 430, 537, 707, 1095, 1265
BstKTI GATC 2 cut(s) 720, 1278
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 717, 1275
BstMWI GCNNNNNNNGC 6 cut(s) 436, 445, 448, 534, 1044, 1092
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 5 cut(s) 341, 630, 631, 1188, 1189
BstSFI CTRYAG 1 cut(s) 1400
BstSLI GKGCMC 1 cut(s) 1040
BstV1I GCAGC 5 cut(s) 460, 689, 810, 1005, 1247
BstV2I GAAGAC 2 cut(s) 648, 1206
BtsCI GGATG 6 cut(s) 254, 720, 751, 956, 1278, 1309
BtsI GCAGTG 2 cut(s) 542, 1100
BtsIMutI CAGTG 4 cut(s) 417, 542, 822, 1100
Cac8I GCNNGC 2 cut(s) 474, 1040
CfoI GCGC 5 cut(s) 430, 537, 707, 1095, 1265
Cfr10I RCCGGY 2 cut(s) 595, 1153
Cfr13I GGNCC 2 cut(s) 289, 484
Cfr9I CCCGGG 2 cut(s) 631, 1189
Csp6I GTAC 4 cut(s) 775, 978, 1333, 1397
CspAI ACCGGT 2 cut(s) 595, 1153
CviQI GTAC 4 cut(s) 775, 978, 1333, 1397
DpnI GATC 2 cut(s) 719, 1277
DpnII GATC 2 cut(s) 717, 1275
DrdI GACNNNNNNGTC 2 cut(s) 650, 1208
DseDI GACNNNNNNGTC 2 cut(s) 650, 1208
Eam1104I CTCTTC 3 cut(s) 16, 133, 252
EarI CTCTTC 3 cut(s) 16, 133, 252
Ecl136II GAGCTC 2 cut(s) 515, 1073
Eco24I GRGCYC 3 cut(s) 145, 517, 1075
Eco47I GGWCC 2 cut(s) 289, 484
Eco53kI GAGCTC 2 cut(s) 515, 1073
Eco57I CTGAAG 4 cut(s) 87, 393, 706, 1264
Eco88I CYCGRG 2 cut(s) 631, 1189
EcoICRI GAGCTC 2 cut(s) 515, 1073
EcoRII CCWGG 1 cut(s) 341
EcoT38I GRGCYC 3 cut(s) 145, 517, 1075
FaiI YATR 8 cut(s) 113, 219, 268, 353, 422, 445, 507, 852
FaqI GGGAC 2 cut(s) 767, 1325
FauI CCCGC 3 cut(s) 726, 1047, 1284
FblI GTMKAC 2 cut(s) 657, 1215
FokI GGATG 6 cut(s) 241, 727, 758, 963, 1285, 1316
FriOI GRGCYC 3 cut(s) 145, 517, 1075
FspBI CTAG 4 cut(s) 525, 924, 1083, 1394
FspI TGCGCA 2 cut(s) 536, 1094
GlaI GCGC 5 cut(s) 429, 536, 706, 1094, 1264
HapII CCGG 4 cut(s) 596, 632, 1154, 1190
HhaI GCGC 5 cut(s) 430, 537, 707, 1095, 1265
Hin6I GCGC 5 cut(s) 428, 535, 705, 1093, 1263
HinP1I GCGC 5 cut(s) 428, 535, 705, 1093, 1263
HinfI GANTC 7 cut(s) 326, 371, 464, 678, 767, 1236, 1325
HpaII CCGG 4 cut(s) 596, 632, 1154, 1190
HphI GGTGA 5 cut(s) 114, 152, 196, 579, 1137
Hpy166II GTNNAC 3 cut(s) 658, 978, 1216
Hpy188I TCNGA 6 cut(s) 137, 460, 683, 714, 1241, 1272
Hpy188III TCNNGA 3 cut(s) 287, 323, 1386
Hpy8I GTNNAC 3 cut(s) 658, 978, 1216
Hpy99I CGWCG 2 cut(s) 656, 1214
HpyAV CCTTC 5 cut(s) 32, 261, 393, 907, 1399
HpyCH4III ACNGT 2 cut(s) 284, 359
HpyCH4V TGCA 7 cut(s) 392, 790, 797, 1047, 1348, 1355, 1402
HpyF10VI GCNNNNNNNGC 6 cut(s) 436, 445, 448, 534, 1044, 1092
HspAI GCGC 5 cut(s) 428, 535, 705, 1093, 1263
Kzo9I GATC 2 cut(s) 717, 1275
LguI GCTCTTC 2 cut(s) 16, 133
LmnI GCTCC 2 cut(s) 425, 860
Lsp1109I GCAGC 5 cut(s) 460, 689, 810, 1005, 1247
MaeI CTAG 4 cut(s) 525, 924, 1083, 1394
MalI GATC 2 cut(s) 719, 1277
MboI GATC 2 cut(s) 717, 1275
MhlI GDGCHC 4 cut(s) 145, 517, 1040, 1075
MlyI GAGTC 3 cut(s) 320, 761, 1319
MseI TTAA 6 cut(s) 363, 552, 873, 1110, 1370, 1374
MslI CAYNNNNRTG 2 cut(s) 761, 1319
MspI CCGG 4 cut(s) 596, 632, 1154, 1190
MspR9I CCNGG 5 cut(s) 343, 632, 633, 1190, 1191
Mva1269I GAATGC 2 cut(s) 799, 1357
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 6 cut(s) 436, 445, 448, 534, 1044, 1092
NciI CCSGG 4 cut(s) 632, 633, 1190, 1191
NdeII GATC 2 cut(s) 717, 1275
NlaIV GGNNCC 3 cut(s) 486, 862, 1037
NmeAIII GCCGAG 1 cut(s) 889
NsbI TGCGCA 2 cut(s) 536, 1094
PacI TTAATTAA 1 cut(s) 1374
PciSI GCTCTTC 2 cut(s) 16, 133
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 2 cut(s) 799, 1357
PfeI GAWTC 4 cut(s) 371, 464, 678, 1236
PflFI GACNNNGTC 1 cut(s) 329
PinAI ACCGGT 2 cut(s) 595, 1153
PleI GAGTC 3 cut(s) 320, 761, 1319
PpsI GAGTC 3 cut(s) 320, 761, 1319
Psp124BI GAGCTC 2 cut(s) 517, 1075
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 3 cut(s) 486, 862, 1037
PspPI GGNCC 2 cut(s) 289, 484
PstI CTGCAG 1 cut(s) 1404
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 4 cut(s) 776, 979, 1334, 1398
RsaNI GTAC 4 cut(s) 775, 978, 1333, 1397
RseI CAYNNNNRTG 2 cut(s) 761, 1319
SacI GAGCTC 2 cut(s) 517, 1075
SapI GCTCTTC 2 cut(s) 16, 133
SaqAI TTAA 6 cut(s) 363, 552, 873, 1110, 1370, 1374
Sau3AI GATC 2 cut(s) 717, 1275
Sau96I GGNCC 2 cut(s) 289, 484
ScaI AGTACT 1 cut(s) 1398
SchI GAGTC 3 cut(s) 320, 761, 1319
ScrFI CCNGG 5 cut(s) 343, 632, 633, 1190, 1191
SduI GDGCHC 4 cut(s) 145, 517, 1040, 1075
SfcI CTRYAG 1 cut(s) 1400
SinI GGWCC 2 cut(s) 289, 484
SmaI CCCGGG 2 cut(s) 633, 1191
SmiMI CAYNNNNRTG 2 cut(s) 761, 1319
SpeI ACTAGT 1 cut(s) 1393
SsiI CCGC 8 cut(s) 58, 440, 559, 733, 827, 1040, 1117, 1291
SspMI CTAG 4 cut(s) 525, 924, 1083, 1394
SstI GAGCTC 2 cut(s) 517, 1075
StyD4I CCNGG 5 cut(s) 341, 630, 631, 1188, 1189
TaaI ACNGT 2 cut(s) 284, 359
TaqI TCGA 1 cut(s) 237
TatI WGTACW 4 cut(s) 774, 977, 1332, 1396
TauI GCSGC 4 cut(s) 442, 561, 829, 1119
TfiI GAWTC 4 cut(s) 371, 464, 678, 1236
Tru1I TTAA 6 cut(s) 363, 552, 873, 1110, 1370, 1374
Tru9I TTAA 6 cut(s) 363, 552, 873, 1110, 1370, 1374
TscAI CASTG 4 cut(s) 417, 549, 822, 1107
TseI GCWGC 6 cut(s) 6, 448, 702, 823, 993, 1260
TspDTI ATGAA 5 cut(s) 146, 243, 384, 409, 1026
TspGWI ACGGA 3 cut(s) 218, 319, 1071
TspMI CCCGGG 2 cut(s) 631, 1189
TspRI CASTG 4 cut(s) 417, 549, 822, 1107
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 289, 484
XapI RAATTY 3 cut(s) 416, 601, 1159
XmaI CCCGGG 2 cut(s) 631, 1189
XmiI GTMKAC 2 cut(s) 657, 1215
XspI CTAG 4 cut(s) 525, 924, 1083, 1394
ZrmI AGTACT 1 cut(s) 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.