Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008961

Physical Location & Seq

Genomic Coordinates Reverse (-)

17532813 .. 17538628

Gene Structure 5816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGGATAATCACGGTCCTCGTTATCCATACCCTTACGGTCAGTACCCATACCCTTACCCATACCCAGCTCCTTATAGACCTCCCAGTTCAGAGCCATACCCACCTCCTCCAACCAATCAATACAGTGCTCCTTATTACCCTTACCCACCACCTCCATACGCAACACCACCACCATATGCATCACCACCACCGCCTCATCAGCACACTTCGGGTTCGCATTCTGGACCATTAGACTATAGCCACAACCCACAACCATCATCTCTCGCGGCTGCTCCTCCAGAGTATCACAGACATTCTTTTGACTACCAACCTTCTCCTTACCCTTATCAGCCCCAAGGTAACTTTGGTGCTTATGGTCCTCCGCCTCCTCACTATTCGTATCAAGAGCCAGCTCAATACCCTCCACCTGAAACTAAACCGCAAGAGCCTCTGCCTCCTCCGCAGCAAACTCAAGGTTTTCAAGAATATCGTAGGCAAGATTGTCTCAGTACCGGGGGAACAGGTCATGATAATGTAAGCAATTCTGGATCTTCTTATCCTCCTGTGGATGAACTTCTAGGTGGTCTGCATATTTCTACTAACCAACCAGGTCCCTCAGTTCCACAACTATCCTCCCTTCCTTCGAACTCTTGGCAAAGCCGCCCTGGGGACTTGTATGGTTACCCTAACAGCTCGTTTCCAAGTAACTCTCATTTGCCACAGTTAGGGAGAGTAGATTCCTCAAGTTCTTATTATGCATCTACCGAATCGCCACATAGTGCGGATATGCAGATGACACTGTTTGGTAAAGGGTCGTTGAAGGTCCTGTTGTTGCATGGGAATTTGGATATTTGGATCTATCATGCTAAAAATCTCCCTAACATGGATATGTTCCATAAGACACTGGGTGATATGTTTGGAAGATTGCCAGGGAAAATTGAAGGGCAGCTTACTAGTAAGATTACCAGTGATCCTTATGTTTCTGTATCAGTTGCTGGTGCTGTGATTGGAAGAACGTATGTCATGAGTAACAGCGAAAATCCTGTTTGGATGCAACATTTTTATGTTCCTGTTGCTCATCATGCTGCAGAAGTTCATTTTGTTGTTAAAGACAGTGATGTTGTGGGTTCACAGCTTATTGGATTGGTTACAATCCCGGTGGAGCAGATATACTCAGGTGCCAAGATCGAAGGAACTTATCCGATTCTAAACAGTAATGGGAAGCCTTGTAAACCAGGGGCAAACTTATCATTATCGATTCAGTATACTCCTATGGACAAACTCAGCGTTTATCATCATGGAGTTGGGGCAGGTCCTGATTACCAAGGGGTACCTGGAACATATTTTCCTCTTAGAAAAGGCGGAACTGTGAGATTGTATCAAGATGCACATGTCCCAGAAGGGATGCTCCCTGGTATAAGACTGGACAATGGAATGTCTTATGAACATGGGAAGTGTTGGCATGATATGTTTGATGCCATACGTCAGGCGCGGCGTTTGATTTATATCACAGGTTGGTCAGTGTGGCACAAAGTTAAGTTGATTCGTGATAAATTAGGTCCTGCATCCGAATGTACTCTTGGGGAGCTTCTAAGATCAAAGTCCCAAGAAGGAGTGAGAGTCCTCCTTTTGATATGGGATGACCCAACTTCACGTAGCATTTTGGGTTATAAAACAGATGGGGTTATGGCAACCCATGATGAGGAAACACGCCGTTTTTTTAAGCATTCCTCAGTTCAAGTCCTGCTTTGCCCCCGAAATGCTGGAAAGCGACATAGTTGGGTCAAGCAGAGGGAAGTTGGGACAATCTATACACATCATCAAAAAAACGTAATAGTAGATGCTGATGCTGGTGGTAACAGAAGGAAAATCATAGCTTTTGTCGGTGGGCTTGATCTATGTGATGGCCGATATGACACTCCTCAGCATCCGTTGTTCAGGACACTACAGACAATTCATAAAGATGATTTTCACAACCCCACTTTTACGGGAAATCTTTCAGGATGTCCAAGAGAACCGTGGCATGACTTACACAGTAAGATTGATGGCCCGGCTGCATATGATGTTCTGACCAACTTCGAAGAGAGATGGTTGAAGGCTGCAAAGCCTAGCGGGATCAAGAAGTTTAAGACTTCCTATGACGATGCGTTGTTAAGGATTGATAGGATTCCAGATATATTAGGAGTTTCTGATACTCCTACTGTTAGTGAGAACGATCCTGAGGCTTGGCATGTTCAGATTTTCCGTTCAATCGATTCAAACTCTGTGAAAGGTTTCCCAAAGGATCCAAAAGATGCTACATGCAAGAACTTGGTGTGTGGGAAGAACGTGCTGATTGATATGAGCATACACACAGCGTATGTCAAAGCCATTCGTGCAGCCCAACACTTCATCTATATTGAGAATCAGTATTTCATTGGGTCTTCATACAACTGGAATGCGCATAAGGACATAGGTGCGAATAATTTGATTCCTATGGAAATTGCGTTGAAGATAGCTGAAAAGATCAGGGCGAATGAACGGTTTGCTGCTTATATTGTCATTCCAATGTGGCCGGAAGGTGTTCCAACCGGCGCTGCTACCCAGAGGATTCTTTATTGGCAGCACAAGACAATACAGATGATGTATGAGACAATCTACAAGGCGTTAGTGGAGACAGGGCTTGAAGGAGCATTCTCCCCACAAGATTATCTCAATTTCTTCTGTCTTGGGAACAGAGAAATGGTGGATGGAATAGATAACTCAGGAACCGGGAGTCCAAGCAATGCAAACACTCCTCAGGCGTTGAGTCGGAAAAGCAGAAGATTTATGGTCTATGTTCACTCGAAAGGGATGGTAGTTGATGATGAATACGTAGTAATTGGATCTGCAAACATAAACCAACGATCAATGGAAGGCACAAGAGATACAGAGATTGCAATGGGAGCTTACCAGCCTCAACATACATGGGCAAGGAAACATTCTGGTCCTCGTGGTCAGATCTATGGATACAGAATGTCGCTTTGGGCAGAGCATATGGCAACATTAGATGACTGTTTCACACAGCCAGAGAGTATAGAGTGTGTAAGGAAAGTGAGAACAATGGGAGAGAGGAACTGGAAACAGTTTGCAGCTGAAGAAGTCTCAGACATGAGAGGACATTTATTAAAGTATCCAGTGGAAGTTGATCGAAAAGGAAAAGTCCGACCACTTCCCGGGAGTGAGACGTTCCCGGACGTCGGAGGTAACATTGTCGGATCATTCATAGCCATACAAGAGAATCTAACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

1083

Amino Acids

121.1

Weight (kDa)

7.04

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	273 - 394	1.5e-16	C2 domain
PLDc	PF00614	597 - 630	5.3e-06	Phospholipase D Active site motif
PLDc_2	PF13091	930 - 967	4.3e-06	PLD-like domain
PLDc	PF00614	933 - 956	1.2e-07	Phospholipase D Active site motif
PLD_C	PF12357	1003 - 1073	7.1e-32	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42010 AT2G42010 AT4G00240 AT4G00240 AT4G00240
fragaria_vesca	FvH4_7g12760
malus_domestica	MD07G1124600.v1.1
prunus_persica	Prupe.2G152100_v2.0.a1 Prupe.2G152100_v2.0.a1
pyrus_communis	pycom07g11820
rosa_chinensis	RchiOBHm_Chr1g0313111 RchiOBHm_Chr1g0351791
rosa_laevigata	RLG00000028383
rosa_multiflora	Rmu_sc0001933.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303540
rosa_rugosa	Rorug01G0221600
rosa_samantha	Rh1AG000800 Rh1AG235500 Rh1BG205900 Rh1CG005200 Rh1DG233000
rosa_wichuraiana	Rw1G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1650
AatII	GACGTC	1 cut(s)	3198
Acc16I	TGCGCA	1 cut(s)	2421
Acc36I	ACCTGC	1 cut(s)	1280
Acc65I	GGTACC	1 cut(s)	1309
AccB1I	GGYRCC	2 cut(s)	1157, 1309
AccI	GTMKAC	1 cut(s)	1244
AccII	CGCG	2 cut(s)	266, 1471
AclWI	GGATC	9 cut(s)	535, 842, 944, 2102, 2189, 2258, 2271, 2851, 3223
AcoI	YGGCCR	2 cut(s)	1885, 2531
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	3114
AcyI	GRCGYC	1 cut(s)	3195
AdeI	CACNNNGTG	2 cut(s)	758, 887
AfaI	GTAC	4 cut(s)	44, 490, 1311, 1555
AfiI	CCNNNNNNNGG	6 cut(s)	646, 704, 862, 1681, 3173, 3197
AflIII	ACRYGT	1 cut(s)	1369
AgsI	TTSAA	9 cut(s)	461, 799, 920, 1718, 2074, 2229, 2238, 2470, 2645
AhlI	ACTAGT	1 cut(s)	932
AjnI	CCWGG	6 cut(s)	586, 643, 907, 1213, 1312, 1390
AjuI	GAANNNNNNNTTGG	4 cut(s)	1542, 1574, 2965, 2997
AloI	GAACNNNNNNTCC	4 cut(s)	1309, 1341, 2719, 2751
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	5 cut(s)	488, 2603, 2627, 3106, 3176
AlwI	GGATC	9 cut(s)	535, 842, 944, 2102, 2189, 2258, 2271, 2851, 3223
AlwNI	CAGNNNCTG	2 cut(s)	974, 1295
Ama87I	CYCGRG	1 cut(s)	3173
AoxI	GGCC	3 cut(s)	1885, 2026, 2531
ApoI	RAATTY	1 cut(s)	820
Asp700I	GAANNNNTTC	3 cut(s)	1975, 2252, 2541
Asp718I	GGTACC	1 cut(s)	1309
AspLEI	GCGC	3 cut(s)	1471, 2422, 2555
AspS9I	GGNCC	9 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2027, 2945
AsuC2I	CCSGG	7 cut(s)	493, 1136, 2030, 2731, 3174, 3175, 3191
AsuHPI	GGTGA	2 cut(s)	174, 899
AsuII	TTCGAA	2 cut(s)	623, 2058
AvaI	CYCGRG	1 cut(s)	3173
AvaII	GGWCC	8 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2945
AxyI	CCTNAGG	2 cut(s)	2199, 2757
BamHI	GGATCC	1 cut(s)	2263
BanI	GGYRCC	2 cut(s)	1157, 1309
BauI	CACGAG	1 cut(s)	2949
BbsI	GAAGAC	1 cut(s)	2394
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	1902
BccI	CCATC	7 cut(s)	262, 1652, 1877, 2018, 2061, 2702, 2806
BceAI	ACGGC	1 cut(s)	1677
BciT130I	CCWGG	6 cut(s)	588, 645, 909, 1215, 1314, 1392
BciVI	GTATCC	2 cut(s)	2960, 3141
BcnI	CCSGG	7 cut(s)	493, 1136, 2030, 2731, 3174, 3175, 3191
BcoDI	GTCTC	5 cut(s)	488, 2603, 2627, 3106, 3176
BcuI	ACTAGT	1 cut(s)	932
BfaI	CTAG	3 cut(s)	557, 933, 2088
BfmI	CTRYAG	3 cut(s)	235, 1065, 1925
BfoI	RGCGCY	1 cut(s)	2556
BfuAI	ACCTGC	1 cut(s)	1280
BfuI	GTATCC	2 cut(s)	2960, 3141
BglII	AGATCT	1 cut(s)	2958
Bme18I	GGWCC	8 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2945
BmeT110I	CYCGRG	1 cut(s)	3173
BmgT120I	GGNCC	9 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2027, 2945
BmiI	GGNNCC	5 cut(s)	592, 1159, 1311, 2265, 2728
BmrI	ACTGGG	2 cut(s)	78, 893
BmuI	ACTGGG	2 cut(s)	78, 893
BpiI	GAAGAC	1 cut(s)	2394
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	1902
Bpu14I	TTCGAA	2 cut(s)	623, 2058
BpuEI	CTTGAG	2 cut(s)	435, 706
BpuMI	CCSGG	7 cut(s)	493, 1136, 2030, 2731, 3174, 3175, 3191
Bsa29I	ATCGAT	2 cut(s)	1235, 2232
BsaAI	YACGTR	2 cut(s)	1634, 2833
BsaBI	GATNNNNATC	1 cut(s)	1484
BsaHI	GRCGYC	1 cut(s)	3195
BsaXI	ACNNNNNCTCC	2 cut(s)	1584, 1614
Bsc4I	CCNNNNNNNGG	6 cut(s)	646, 704, 862, 1681, 3173, 3197
Bse118I	RCCGGY	1 cut(s)	2549
Bse1I	ACTGG	7 cut(s)	84, 888, 945, 1407, 2417, 3080, 3134
Bse21I	CCTNAGG	2 cut(s)	2199, 2757
Bse3DI	GCAATG	2 cut(s)	2749, 2904
Bse8I	GATNNNNATC	1 cut(s)	1484
BseBI	CCWGG	6 cut(s)	588, 645, 909, 1215, 1314, 1392
BseCI	ATCGAT	2 cut(s)	1235, 2232
BseGI	GGATG	9 cut(s)	553, 1035, 1389, 1544, 1624, 1906, 1988, 2713, 2817
BseJI	GATNNNNATC	1 cut(s)	1484
BseLI	CCNNNNNNNGG	6 cut(s)	646, 704, 862, 1681, 3173, 3197
BseMI	GCAATG	2 cut(s)	2749, 2904
BseNI	ACTGG	7 cut(s)	84, 888, 945, 1407, 2417, 3080, 3134
BseRI	GAGGAG	6 cut(s)	96, 264, 357, 426, 1890, 2745
BseYI	CCCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	2376
Bsh1236I	CGCG	2 cut(s)	266, 1471
BshFI	GGCC	3 cut(s)	1887, 2028, 2533
BshNI	GGYRCC	2 cut(s)	1157, 1309
BshVI	ATCGAT	2 cut(s)	1235, 2232
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	3173
BsiSI	CCGG	8 cut(s)	492, 1136, 2030, 2534, 2550, 2730, 3174, 3191
BslFI	GGGAC	5 cut(s)	576, 662, 1358, 1567, 1795
BslI	CCNNNNNNNGG	6 cut(s)	646, 704, 862, 1681, 3173, 3197
BsmAI	GTCTC	5 cut(s)	488, 2603, 2627, 3106, 3176
BsmBI	CGTCTC	1 cut(s)	3176
BsmFI	GGGAC	5 cut(s)	576, 662, 1358, 1567, 1795
BsmI	GAATGC	4 cut(s)	217, 1705, 2422, 2651
BsnI	GGCC	3 cut(s)	1887, 2028, 2533
BsoBI	CYCGRG	1 cut(s)	3173
Bsp119I	TTCGAA	2 cut(s)	623, 2058
Bsp1286I	GDGCHC	1 cut(s)	130
BspANI	GGCC	3 cut(s)	1887, 2028, 2533
BspDI	ATCGAT	2 cut(s)	1235, 2232
BspFNI	CGCG	2 cut(s)	266, 1471
BspHI	TCATGA	2 cut(s)	505, 1002
BspLI	GGNNCC	5 cut(s)	592, 1159, 1311, 2265, 2728
BspMAI	CTGCAG	1 cut(s)	1069
BspMI	ACCTGC	1 cut(s)	1280
BspPI	GGATC	9 cut(s)	535, 842, 944, 2102, 2189, 2258, 2271, 2851, 3223
BspT104I	TTCGAA	2 cut(s)	623, 2058
BspT107I	GGYRCC	2 cut(s)	1157, 1309
BsrDI	GCAATG	2 cut(s)	2749, 2904
BsrFI	RCCGGY	1 cut(s)	2549
BsrI	ACTGG	7 cut(s)	84, 888, 945, 1407, 2417, 3080, 3134
BssAI	RCCGGY	1 cut(s)	2549
BssNAI	GTATAC	1 cut(s)	1245
BssNI	GRCGYC	1 cut(s)	3195
BssSI	CACGAG	1 cut(s)	2949
BssT1I	CCWWGG	2 cut(s)	334, 1303
Bst1107I	GTATAC	1 cut(s)	1245
Bst2BI	CACGAG	1 cut(s)	2949
Bst2UI	CCWGG	6 cut(s)	588, 645, 909, 1215, 1314, 1392
Bst6I	CTCTTC	1 cut(s)	2055
BstACI	GRCGYC	1 cut(s)	3195
BstBAI	YACGTR	2 cut(s)	1634, 2833
BstBI	TTCGAA	2 cut(s)	623, 2058
BstC8I	GCNNGC	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	1997
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	9 cut(s)	553, 1035, 1389, 1544, 1624, 1906, 1988, 2713, 2817
BstFNI	CGCG	2 cut(s)	266, 1471
BstH2I	RGCGCY	1 cut(s)	2556
BstHHI	GCGC	3 cut(s)	1471, 2422, 2555
BstMAI	GTCTC	5 cut(s)	488, 2603, 2627, 3106, 3176
BstMWI	GCNNNNNNNGC	5 cut(s)	199, 439, 1061, 2354, 2903
BstNI	CCWGG	6 cut(s)	588, 645, 909, 1215, 1314, 1392
BstNSI	RCATGY	3 cut(s)	1373, 2213, 2283
BstPI	GGTNACC	1 cut(s)	659
BstSFI	CTRYAG	3 cut(s)	235, 1065, 1925
BstSNI	TACGTA	1 cut(s)	2833
BstUI	CGCG	2 cut(s)	266, 1471
BstV2I	GAAGAC	1 cut(s)	2394
BstX2I	RGATCY	5 cut(s)	527, 834, 2263, 2843, 2958
BstYI	RGATCY	5 cut(s)	527, 834, 2263, 2843, 2958
BstZ17I	GTATAC	1 cut(s)	1245
Bsu15I	ATCGAT	2 cut(s)	1235, 2232
Bsu36I	CCTNAGG	2 cut(s)	2199, 2757
BsuI	GTATCC	2 cut(s)	2960, 3141
BsuRI	GGCC	3 cut(s)	1887, 2028, 2533
BsuTUI	ATCGAT	2 cut(s)	1235, 2232
BtgI	CCRYGG	1 cut(s)	1997
BtsCI	GGATG	9 cut(s)	553, 1035, 1389, 1544, 1624, 1906, 1988, 2713, 2817
BtsIMutI	CAGTG	7 cut(s)	130, 776, 881, 952, 1099, 1506, 3141
BveI	ACCTGC	1 cut(s)	1280
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	2 cut(s)	974, 1295
CciI	TCATGA	2 cut(s)	505, 1002
CfoI	GCGC	3 cut(s)	1471, 2422, 2555
Cfr10I	RCCGGY	1 cut(s)	2549
Cfr13I	GGNCC	9 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2027, 2945
Cfr9I	CCCGGG	1 cut(s)	3173
ClaI	ATCGAT	2 cut(s)	1235, 2232
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	4 cut(s)	43, 489, 1310, 1554
CspCI	CAANNNNNGTGG	2 cut(s)	1119, 1154
CviQI	GTAC	4 cut(s)	43, 489, 1310, 1554
DraIII	CACNNNGTG	2 cut(s)	758, 887
EaeI	YGGCCR	2 cut(s)	1885, 2531
Eam1104I	CTCTTC	1 cut(s)	2055
EarI	CTCTTC	1 cut(s)	2055
EciI	GGCGGA	2 cut(s)	351, 1356
Eco105I	TACGTA	1 cut(s)	2833
Eco130I	CCWWGG	2 cut(s)	334, 1303
Eco47I	GGWCC	8 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2945
Eco57I	CTGAAG	1 cut(s)	3114
Eco81I	CCTNAGG	2 cut(s)	2199, 2757
Eco88I	CYCGRG	1 cut(s)	3173
Eco91I	GGTNACC	1 cut(s)	659
EcoO109I	RGGNCCY	4 cut(s)	590, 802, 1292, 1538
EcoO65I	GGTNACC	1 cut(s)	659
EcoRII	CCWGG	6 cut(s)	586, 643, 907, 1213, 1312, 1390
EcoT14I	CCWWGG	2 cut(s)	334, 1303
EcoT22I	ATGCAT	2 cut(s)	181, 739
ErhI	CCWWGG	2 cut(s)	334, 1303
Esp3I	CGTCTC	1 cut(s)	3176
FalI	AAGNNNNNCTT	4 cut(s)	912, 944, 1710, 1742
FaqI	GGGAC	5 cut(s)	576, 662, 1358, 1567, 1795
FauI	CCCGC	1 cut(s)	2084
FauNDI	CATATG	3 cut(s)	175, 2038, 2994
FblI	GTMKAC	1 cut(s)	1244
FokI	GGATG	9 cut(s)	560, 1042, 1396, 1531, 1631, 1893, 1995, 2720, 2824
FspAI	RTGCGCAY	1 cut(s)	2421
FspBI	CTAG	3 cut(s)	557, 933, 2088
FspI	TGCGCA	1 cut(s)	2421
GlaI	GCGC	3 cut(s)	1470, 2421, 2554
GsaI	CCCAGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	2556
HaeIII	GGCC	3 cut(s)	1887, 2028, 2533
HapII	CCGG	8 cut(s)	492, 1136, 2030, 2534, 2550, 2730, 3174, 3191
HhaI	GCGC	3 cut(s)	1471, 2422, 2555
Hin1I	GRCGYC	1 cut(s)	3195
Hin6I	GCGC	3 cut(s)	1469, 2420, 2553
HinP1I	GCGC	3 cut(s)	1469, 2420, 2553
HpaII	CCGG	8 cut(s)	492, 1136, 2030, 2534, 2550, 2730, 3174, 3191
HphI	GGTGA	2 cut(s)	174, 899
Hpy166II	GTNNAC	4 cut(s)	1109, 1211, 1245, 2800
Hpy8I	GTNNAC	4 cut(s)	1109, 1211, 1245, 2800
Hpy99I	CGWCG	1 cut(s)	3200
HpyCH4IV	ACGT	8 cut(s)	995, 1462, 1633, 1809, 2307, 2832, 3185, 3195
HpyF10VI	GCNNNNNNNGC	5 cut(s)	199, 439, 1061, 2354, 2903
HpySE526I	ACGT	8 cut(s)	995, 1462, 1633, 1809, 2307, 2832, 3185, 3195
Hsp92I	GRCGYC	1 cut(s)	3195
HspAI	GCGC	3 cut(s)	1469, 2420, 2553
KpnI	GGTACC	1 cut(s)	1313
LmnI	GCTCC	8 cut(s)	73, 133, 277, 1141, 1392, 1564, 2648, 2903
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	3 cut(s)	557, 933, 2088
MaeII	ACGT	8 cut(s)	995, 1462, 1633, 1809, 2307, 2832, 3185, 3195
MaeIII	GTNAC	7 cut(s)	338, 659, 683, 1007, 1126, 1835, 3203
MflI	RGATCY	5 cut(s)	527, 834, 2263, 2843, 2958
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	9 cut(s)	520, 820, 915, 1532, 1932, 2443, 2460, 2674, 2838
MlyI	GAGTC	3 cut(s)	1608, 2743, 2776
MmeI	TCCRAC	6 cut(s)	134, 2570, 2750, 3178, 3187, 3193
Mph1103I	ATGCAT	2 cut(s)	181, 739
MroXI	GAANNNNTTC	3 cut(s)	1975, 2252, 2541
MseI	TTAA	6 cut(s)	1086, 1515, 1701, 2106, 2132, 3125
MslI	CAYNNNNRTG	6 cut(s)	510, 866, 1041, 1549, 1941, 2525
MspA1I	CMGCKG	1 cut(s)	3092
MspI	CCGG	8 cut(s)	492, 1136, 2030, 2534, 2550, 2730, 3174, 3191
Mva1269I	GAATGC	4 cut(s)	217, 1705, 2422, 2651
MvaI	CCWGG	6 cut(s)	588, 645, 909, 1215, 1314, 1392
MvnI	CGCG	2 cut(s)	266, 1471
MwoI	GCNNNNNNNGC	5 cut(s)	199, 439, 1061, 2354, 2903
NciI	CCSGG	7 cut(s)	493, 1136, 2030, 2731, 3174, 3175, 3191
NdeI	CATATG	3 cut(s)	175, 2038, 2994
NlaIV	GGNNCC	5 cut(s)	592, 1159, 1311, 2265, 2728
NsbI	TGCGCA	1 cut(s)	2421
NsiI	ATGCAT	2 cut(s)	181, 739
NspI	RCATGY	3 cut(s)	1373, 2213, 2283
NspV	TTCGAA	2 cut(s)	623, 2058
PagI	TCATGA	2 cut(s)	505, 1002
PasI	CCCWGGG	1 cut(s)	644
PciI	ACATGT	1 cut(s)	1369
PctI	GAATGC	4 cut(s)	217, 1705, 2422, 2651
PdmI	GAANNNNTTC	3 cut(s)	1975, 2252, 2541
PfoI	TCCNGGA	1 cut(s)	3189
PleI	GAGTC	3 cut(s)	1607, 2742, 2775
PpsI	GAGTC	3 cut(s)	1607, 2742, 2775
Ppu21I	YACGTR	2 cut(s)	1634, 2833
PpuMI	RGGWCCY	4 cut(s)	590, 802, 1292, 1538
PscI	ACATGT	1 cut(s)	1369
PsiI	TTATAA	1 cut(s)	1650
Psp5II	RGGWCCY	4 cut(s)	590, 802, 1292, 1538
Psp6I	CCWGG	6 cut(s)	586, 643, 907, 1213, 1312, 1390
PspEI	GGTNACC	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	6 cut(s)	586, 643, 907, 1213, 1312, 1390
PspN4I	GGNNCC	5 cut(s)	592, 1159, 1311, 2265, 2728
PspPI	GGNCC	9 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2027, 2945
PspPPI	RGGWCCY	4 cut(s)	590, 802, 1292, 1538
PstI	CTGCAG	1 cut(s)	1069
PstNI	CAGNNNCTG	2 cut(s)	974, 1295
PsuI	RGATCY	5 cut(s)	527, 834, 2263, 2843, 2958
PvuII	CAGCTG	1 cut(s)	3092
RsaI	GTAC	4 cut(s)	44, 490, 1311, 1555
RsaNI	GTAC	4 cut(s)	43, 489, 1310, 1554
RseI	CAYNNNNRTG	6 cut(s)	510, 866, 1041, 1549, 1941, 2525
SaqAI	TTAA	6 cut(s)	1086, 1515, 1701, 2106, 2132, 3125
Sau96I	GGNCC	9 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2027, 2945
SchI	GAGTC	3 cut(s)	1608, 2743, 2776
SduI	GDGCHC	1 cut(s)	130
SexAI	ACCWGGT	1 cut(s)	586
SfcI	CTRYAG	3 cut(s)	235, 1065, 1925
SfuI	TTCGAA	2 cut(s)	623, 2058
SinI	GGWCC	8 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2945
SmaI	CCCGGG	1 cut(s)	3175
SmiMI	CAYNNNNRTG	6 cut(s)	510, 866, 1041, 1549, 1941, 2525
SmlI	CTYRAG	2 cut(s)	450, 721
SmoI	CTYRAG	2 cut(s)	450, 721
SnaBI	TACGTA	1 cut(s)	2833
SpeI	ACTAGT	1 cut(s)	932
Sse9I	AATT	9 cut(s)	520, 820, 915, 1532, 1932, 2443, 2460, 2674, 2838
SspMI	CTAG	3 cut(s)	557, 933, 2088
StyI	CCWWGG	2 cut(s)	334, 1303
TaiI	ACGT	8 cut(s)	998, 1465, 1636, 1812, 2310, 2835, 3188, 3198
TaqI	TCGA	7 cut(s)	623, 1167, 1235, 2058, 2232, 2804, 3148
TasI	AATT	9 cut(s)	520, 820, 915, 1532, 1932, 2443, 2460, 2674, 2838
TatI	WGTACW	1 cut(s)	1553
TauI	GCSGC	3 cut(s)	269, 642, 1474
Tru1I	TTAA	6 cut(s)	1086, 1515, 1701, 2106, 2132, 3125
Tru9I	TTAA	6 cut(s)	1086, 1515, 1701, 2106, 2132, 3125
TscAI	CASTG	7 cut(s)	130, 783, 888, 952, 1099, 1506, 3141
TspGWI	ACGGA	2 cut(s)	1899, 2213
TspMI	CCCGGG	1 cut(s)	3173
TspRI	CASTG	7 cut(s)	130, 783, 888, 952, 1099, 1506, 3141
VpaK11BI	GGWCC	8 cut(s)	14, 224, 356, 590, 802, 1292, 1538, 2945
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	3 cut(s)	1373, 2213, 2283
XcmI	CCANNNNNNNNNTGG	3 cut(s)	341, 1310, 1995
XmaI	CCCGGG	1 cut(s)	3173
XmiI	GTMKAC	1 cut(s)	1244
XmnI	GAANNNNTTC	3 cut(s)	1975, 2252, 2541
XspI	CTAG	3 cut(s)	557, 933, 2088
ZraI	GACGTC	1 cut(s)	3196
Zsp2I	ATGCAT	2 cut(s)	181, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.