Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008961

Physical Location & Seq

Genomic Coordinates Forward (+)

882481 .. 894968

Gene Structure 12488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG005200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGTGAAAATCCATGTCCCCACAATTTCCCCCCAACTACAGCATGCAGCGCATGTGTCGCATGGTGTGGTTGTATGGTTTAACTTGGTGGCATATTCTGAGGCAGAATATTATTATGCTTGGAGCACAGAGGAGGAGGAGTCATCGTCCGCCGTCGTGCTTGGGTGTCAGGAGGACAATGAACGTTCTTGGTCTCACCGTAGCACCGCTGGTTGTCCAAGAGAGCCATGGCATGATTTGCACTCTAGGCTTGATGGTCCAGCAGCATATGATGTTCTGACCAACTTTGAGGAGCGCTGGTTAAAGGCTTCAAAACCACAAGGGATGAAGAAACTGAAAAGAACCTACAATGATTCTTTGCTCAAGTTGGAAAGGATTCCAGACATAATTGGAGCAGCCCATGCTGCTTCCACTAGTGACAACGATCCTGAAACTAGGCATGTTCAGATCTTTCGTTCAATTGATTCAAATTCTGTTAAAGGTTTCCCAAAGGATCCAAAAGAAGCAAAAAGCAAGAATCTGCATTTCATATATATAGAGAATCAATATTTTATTGGGTCTTCATACAATTGGAATCAATACAAAGACTTAGGTGCTAATAATTTGTTCCCATGGAAATTGCCCTTAAGATTGCTGAGAAAATCAGAGCACACGAGAGATTCGCTGCGTATATTGTTATTCCAATGTGGCCAGAAGGTGTTCCGACAGGTGCAGCAACACAAAGAATTCTATTTTGCACAAGACAATGCAAATGATGCTATAGATGGAAATGATACATCTGTTTCTGGAAGTCCTGCTGCAGCAAACACTCCACAGGCATTTAGTCAAAGAAGCAGGCGATTTATGATTTATGTTCACTCGAAAGGTATGATAGTCGATGACGAGTATGTAATAGTGGGGTCTGCAAACATAAATCAGCGCTCTATGGAAGGGACAAGAGACACTGAAATAGCAATGGGGGCCTACCAACCTCATCATACATGGGCAAGAAATCATTCTAGTCCTTTTGGAGAGTATCCAGTTGAAATTGATCGAAAAGGCAAAGTGACATCCCTTCCTGGATGTGAGAGTTTCCCCGACGTAGGAGGAAATATAACTGACCAACTCGCTTCCTTGGCATTCAAGGAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

377

Amino Acids

42.79

Weight (kDa)

6.47

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc_2	PF13091	282 - 319	6.7e-07	PLD-like domain
PLDc	PF00614	283 - 308	1e-08	Phospholipase D Active site motif
PLD_C	PF12357	338 - 366	4.4e-08	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42010 AT2G42010 AT4G00240 AT4G00240 AT4G00240
fragaria_vesca	FvH4_7g12760
malus_domestica	MD07G1124600.v1.1
prunus_persica	Prupe.2G152100_v2.0.a1 Prupe.2G152100_v2.0.a1
pyrus_communis	pycom07g11820
rosa_chinensis	RchiOBHm_Chr1g0313111 RchiOBHm_Chr1g0351791
rosa_laevigata	RLG00000028383
rosa_multiflora	Rmu_sc0001933.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303540
rosa_rugosa	Rorug01G0221600
rosa_samantha	Rh1AG000800 Rh1AG235500 Rh1BG205900 Rh1CG005200 Rh1DG233000
rosa_wichuraiana	Rw1G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	150, 207
AclI	AACGTT	1 cut(s)	184
AclWI	GGATC	3 cut(s)	419, 488, 501
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	469, 725
AfeI	AGCGCT	2 cut(s)	296, 920
AfiI	CCNNNNNNNGG	1 cut(s)	1082
AflII	CTTAAG	1 cut(s)	625
AgsI	TTSAA	5 cut(s)	312, 459, 468, 1025, 1123
AhlI	ACTAGT	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	1057
Alw21I	GWGCWC	2 cut(s)	128, 651
Alw26I	GTCTC	2 cut(s)	198, 933
AlwI	GGATC	3 cut(s)	419, 488, 501
Aor51HI	AGCGCT	2 cut(s)	296, 920
AoxI	GGCC	2 cut(s)	688, 960
ApeKI	GCWGC	8 cut(s)	47, 263, 395, 404, 664, 712, 797, 800
ApoI	RAATTY	2 cut(s)	469, 725
Asp700I	GAANNNNTTC	3 cut(s)	375, 698, 994
AspLEI	GCGC	3 cut(s)	52, 297, 921
AspS9I	GGNCC	2 cut(s)	257, 960
AsuHPI	GGTGA	2 cut(s)	16, 188
AvaII	GGWCC	1 cut(s)	257
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	493
BauI	CACGAG	1 cut(s)	652
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	128, 651
BbvI	GCAGC	8 cut(s)	59, 275, 391, 407, 651, 724, 784, 812
BccI	CCATC	2 cut(s)	248, 758
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	1059
BciVI	GTATCC	1 cut(s)	1026
BcoDI	GTCTC	2 cut(s)	198, 933
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	4 cut(s)	246, 414, 435, 999
BfmI	CTRYAG	3 cut(s)	38, 759, 798
BfoI	RGCGCY	2 cut(s)	298, 922
BfrI	CTTAAG	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	1026
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	8 cut(s)	48, 264, 396, 405, 665, 713, 798, 801
BlsI	GCNGC	8 cut(s)	49, 265, 397, 406, 666, 714, 799, 802
Bme1390I	CCNGG	1 cut(s)	1059
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	257, 960
BmiI	GGNNCC	3 cut(s)	495, 961, 1128
BmrFI	CCNGG	1 cut(s)	1059
BmsI	GCATC	1 cut(s)	745
BpiI	GAAGAC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	227, 611, 1113
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 131, 155, 161, 284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	1082
Bse1I	ACTGG	1 cut(s)	1019
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	1 cut(s)	1059
BseDI	CCNNGG	3 cut(s)	227, 611, 1113
BseGI	GGATG	3 cut(s)	330, 1049, 1067
BseLI	CCNNNNNNNGG	1 cut(s)	1082
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	2 cut(s)	90, 626
BseNI	ACTGG	1 cut(s)	1019
BseRI	GAGGAG	4 cut(s)	146, 149, 152, 305
BseXI	GCAGC	8 cut(s)	59, 275, 391, 407, 651, 724, 784, 812
BsgI	GTGCAG	1 cut(s)	731
BshFI	GGCC	2 cut(s)	690, 962
BsiHKAI	GWGCWC	2 cut(s)	128, 651
BslFI	GGGAC	2 cut(s)	2, 946
BslI	CCNNNNNNNGG	1 cut(s)	1082
BsmAI	GTCTC	2 cut(s)	198, 933
BsmFI	GGGAC	2 cut(s)	2, 946
BsmI	GAATGC	1 cut(s)	1118
BsnI	GGCC	2 cut(s)	690, 962
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	128, 651
Bsp143I	GATC	4 cut(s)	424, 447, 493, 1030
Bsp19I	CCATGG	2 cut(s)	227, 611
BspACI	CCGC	2 cut(s)	150, 207
BspANI	GGCC	2 cut(s)	690, 962
BspCNI	CTCAG	2 cut(s)	91, 627
BspLI	GGNNCC	3 cut(s)	495, 961, 1128
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	3 cut(s)	419, 488, 501
BspTI	CTTAAG	1 cut(s)	625
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	1019
BssECI	CCNNGG	3 cut(s)	227, 611, 1113
BssMI	GATC	4 cut(s)	424, 447, 493, 1030
BssSI	CACGAG	1 cut(s)	652
BssT1I	CCWWGG	3 cut(s)	227, 611, 1113
Bst2BI	CACGAG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	1059
Bst4CI	ACNGT	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	625
BstAPI	GCANNNNNTGC	3 cut(s)	238, 401, 755
BstC8I	GCNNGC	2 cut(s)	45, 836
BstDEI	CTNAG	3 cut(s)	99, 589, 635
BstDSI	CCRYGG	2 cut(s)	227, 611
BstF5I	GGATG	3 cut(s)	330, 1049, 1067
BstH2I	RGCGCY	2 cut(s)	298, 922
BstHHI	GCGC	3 cut(s)	52, 297, 921
BstKTI	GATC	4 cut(s)	427, 450, 496, 1033
BstMAI	GTCTC	2 cut(s)	198, 933
BstMBI	GATC	4 cut(s)	424, 447, 493, 1030
BstMWI	GCNNNNNNNGC	9 cut(s)	49, 58, 238, 247, 401, 404, 755, 959, 1115
BstNI	CCWGG	1 cut(s)	1059
BstNSI	RCATGY	3 cut(s)	47, 56, 443
BstSCI	CCNGG	1 cut(s)	1057
BstSFI	CTRYAG	3 cut(s)	38, 759, 798
BstV1I	GCAGC	8 cut(s)	59, 275, 391, 407, 651, 724, 784, 812
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	2 cut(s)	447, 493
BstYI	RGATCY	2 cut(s)	447, 493
BsuI	GTATCC	1 cut(s)	1026
BsuRI	GGCC	2 cut(s)	690, 962
BtgI	CCRYGG	2 cut(s)	227, 611
BtsCI	GGATG	3 cut(s)	330, 1049, 1067
BtsIMutI	CAGTG	1 cut(s)	942
Cac8I	GCNNGC	2 cut(s)	45, 836
CfoI	GCGC	3 cut(s)	52, 297, 921
Cfr13I	GGNCC	2 cut(s)	257, 960
CviJI	RGCY	6 cut(s)	226, 250, 308, 398, 690, 962
CviKI_1	RGCY	6 cut(s)	226, 250, 308, 398, 690, 962
DdeI	CTNAG	3 cut(s)	99, 589, 635
DpnI	GATC	4 cut(s)	426, 449, 495, 1032
DpnII	GATC	4 cut(s)	424, 447, 493, 1030
EaeI	YGGCCR	1 cut(s)	688
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	3 cut(s)	227, 611, 1113
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	257
Eco47III	AGCGCT	2 cut(s)	296, 920
EcoO109I	RGGNCCY	1 cut(s)	960
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	1057
EcoT14I	CCWWGG	3 cut(s)	227, 611, 1113
ErhI	CCWWGG	3 cut(s)	227, 611, 1113
FaqI	GGGAC	2 cut(s)	2, 946
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	8 cut(s)	48, 264, 396, 405, 665, 713, 798, 801
FokI	GGATG	3 cut(s)	337, 1036, 1074
Fsp4HI	GCNGC	8 cut(s)	48, 264, 396, 405, 665, 713, 798, 801
FspBI	CTAG	4 cut(s)	246, 414, 435, 999
GlaI	GCGC	3 cut(s)	51, 296, 920
GluI	GCNGC	8 cut(s)	48, 264, 396, 405, 665, 713, 798, 801
HaeII	RGCGCY	2 cut(s)	298, 922
HaeIII	GGCC	2 cut(s)	690, 962
HhaI	GCGC	3 cut(s)	52, 297, 921
Hin6I	GCGC	3 cut(s)	50, 295, 919
HinP1I	GCGC	3 cut(s)	50, 295, 919
HinfI	GANTC	8 cut(s)	140, 353, 376, 464, 517, 541, 574, 659
HphI	GGTGA	2 cut(s)	16, 188
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	5 cut(s)	100, 279, 447, 646, 704
Hpy188III	TCNNGA	4 cut(s)	170, 380, 428, 786
Hpy8I	GTNNAC	1 cut(s)	856
Hpy99I	CGWCG	2 cut(s)	158, 1082
HpyAV	CCTTC	3 cut(s)	688, 923, 1064
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	184, 1080
HpyCH4V	TGCA	8 cut(s)	47, 241, 523, 712, 737, 749, 800, 905
HpyF10VI	GCNNNNNNNGC	9 cut(s)	49, 58, 238, 247, 401, 404, 755, 959, 1115
HpyF3I	CTNAG	3 cut(s)	99, 589, 635
HpySE526I	ACGT	2 cut(s)	184, 1080
HspAI	GCGC	3 cut(s)	50, 295, 919
Kzo9I	GATC	4 cut(s)	424, 447, 493, 1030
LmnI	GCTCC	3 cut(s)	123, 292, 392
Lsp1109I	GCAGC	8 cut(s)	59, 275, 391, 407, 651, 724, 784, 812
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	4 cut(s)	246, 414, 435, 999
MaeII	ACGT	2 cut(s)	184, 1080
MaeIII	GTNAC	2 cut(s)	416, 1045
MalI	GATC	4 cut(s)	426, 449, 495, 1032
MboI	GATC	4 cut(s)	424, 447, 493, 1030
MboII	GAAGA	2 cut(s)	340, 552
MfeI	CAATTG	2 cut(s)	459, 568
MflI	RGATCY	2 cut(s)	447, 493
MhlI	GDGCHC	2 cut(s)	128, 651
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	9 cut(s)	24, 387, 459, 469, 568, 601, 617, 725, 1026
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	348, 727
MnlI	CCTC	8 cut(s)	94, 124, 127, 130, 166, 283, 981, 1079
Mox20I	TGGCCA	1 cut(s)	690
MroXI	GAANNNNTTC	3 cut(s)	375, 698, 994
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	4 cut(s)	81, 302, 477, 626
Msp20I	TGGCCA	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	1059
MunI	CAATTG	2 cut(s)	459, 568
Mva1269I	GAATGC	1 cut(s)	1118
MvaI	CCWGG	1 cut(s)	1059
MwoI	GCNNNNNNNGC	9 cut(s)	49, 58, 238, 247, 401, 404, 755, 959, 1115
NcoI	CCATGG	2 cut(s)	227, 611
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	4 cut(s)	424, 447, 493, 1030
NlaIV	GGNNCC	3 cut(s)	495, 961, 1128
NmuCI	GTSAC	2 cut(s)	416, 1045
NspI	RCATGY	3 cut(s)	47, 56, 443
PaeI	GCATGC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	1118
PdmI	GAANNNNTTC	3 cut(s)	375, 698, 994
PfeI	GAWTC	7 cut(s)	353, 376, 464, 517, 541, 574, 659
PfoI	TCCNGGA	1 cut(s)	1057
PkrI	GCNGC	8 cut(s)	49, 265, 397, 406, 666, 714, 799, 802
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp1406I	AACGTT	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	1057
PspGI	CCWGG	1 cut(s)	1057
PspN4I	GGNNCC	3 cut(s)	495, 961, 1128
PspPI	GGNCC	2 cut(s)	257, 960
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	447, 493
SaqAI	TTAA	4 cut(s)	81, 302, 477, 626
SatI	GCNGC	8 cut(s)	48, 264, 396, 405, 665, 713, 798, 801
Sau3AI	GATC	4 cut(s)	424, 447, 493, 1030
Sau96I	GGNCC	2 cut(s)	257, 960
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	1059
SduI	GDGCHC	2 cut(s)	128, 651
SetI	ASST	9 cut(s)	187, 347, 484, 595, 699, 711, 868, 973, 1083
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	3 cut(s)	38, 759, 798
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	362, 625
SmoI	CTYRAG	2 cut(s)	362, 625
SpeI	ACTAGT	1 cut(s)	413
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	9 cut(s)	24, 387, 459, 469, 568, 601, 617, 725, 1026
SsiI	CCGC	2 cut(s)	150, 207
SspI	AATATT	2 cut(s)	110, 548
SspMI	CTAG	4 cut(s)	246, 414, 435, 999
StyD4I	CCNGG	1 cut(s)	1057
StyI	CCWWGG	3 cut(s)	227, 611, 1113
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	187, 1083
TaqI	TCGA	3 cut(s)	860, 876, 1033
TasI	AATT	9 cut(s)	24, 387, 459, 469, 568, 601, 617, 725, 1026
TfiI	GAWTC	7 cut(s)	353, 376, 464, 517, 541, 574, 659
Tru1I	TTAA	4 cut(s)	81, 302, 477, 626
Tru9I	TTAA	4 cut(s)	81, 302, 477, 626
TscAI	CASTG	1 cut(s)	949
TseFI	GTSAC	2 cut(s)	416, 1045
TseI	GCWGC	8 cut(s)	47, 263, 395, 404, 664, 712, 797, 800
Tsp45I	GTSAC	2 cut(s)	416, 1045
TspDTI	ATGAA	4 cut(s)	195, 341, 517, 552
TspRI	CASTG	1 cut(s)	949
Vha464I	CTTAAG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	469, 725
XceI	RCATGY	3 cut(s)	47, 56, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmnI	GAANNNNTTC	3 cut(s)	375, 698, 994
XspI	CTAG	4 cut(s)	246, 414, 435, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.