Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008961

Physical Location & Seq

Genomic Coordinates Forward (+)

229713 .. 232993

Gene Structure 3281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGAAGAAACTGAAAAGAACCTACAATGATTCTTTGCTCAAGTTGGAAAGGATTCCAGACATAATTGGAGCAGCCCATGCTGCTTCCACTAGTGACAACGATCCTGAAACTTGGCATGTTCAGATCTTTCGTTCAATTGATTCAAACTCTGTTAAAGGTTTCCCAAAGGATCCAAAAGAAGCAAAAAGCAAGAATCTGGTATGCGGAAAGAATGTGCTGATCGACATGAGCATACAAACAGCATATGTGAAGGCCATCCTGTTGGGTTTGGTGCCTATCCCTCCTTGGTGGAGATATTTTGCATGGCATGAATGCATGATATTAATTGTTTGTGCATTCAAGGTGACAACTTATGCATGGAAAATTGGTGCATGGTCAAGTGCATGGATTGGGTGGTTGATTCATGAAGGAGCATTGATGAAGTTGAGAGAGGGTGTACAAGGGGTATCCTATTGGATACAAGGGCTTGGGTTGGGCATAAACTTGAGCGGTGTAATCTTGTACTTGTGTAATTCTCTCATTAGTGAAGGTGAAACTCTCCGAGGACGTAGGCAAGGATATTGGCCGAACCTCGTTAAATCTTGTGCTAATAATTTGTTCCCATGGAAATTGCCCTTAAGATTGCTGAGAAAATCAGAGCACACGAGAGATTCGCTGCGTATATTGTTATTCCAATGTGGCCAGAAGGTGTTCCGACAGCACAAGACAATGCAAATGATGTATGAGACAATTTACAAGGCGTTAGTGGAAAAGGGGTTGGAGGGTGCATTCTGCCCCCAAGACTATTTAAACTTCTTTTGTCTTGGAAATCGTGAGGCTATAGATGGAAATGATACATCTGTTTCTGGAAGTCCTGCTGCAGCAAACACTCCACAGGCATTTAGTCAAAGAAGCAGGCGATTTATGATTTATGTTCACTCGAAAGGTATGATAGTCGATGACGAGTATGTAATAGTGGGGTCTGCAAACATAAATCAGCGCTCTATGGAAGGGACAAGAGACACTGAAATAGCAATGGGGGCCTACCAACCTCATCATACATGGGCAAGAAATCATTCTAGTCCTTTTGGAGAGATATATGGATATAGAATGTCACTATGGGCAGAGCACACAGGAACCATTGAGGACTGTTTTAGAGAACCAGAGAGTCTTGAATGTGTTAGGAGAGTTAGAGCAATGGGTGGGATGAACTGGAAACAATTTGCTGCTGAGGATGCAACAGAGATGACGGGCCATCTATTGAAGTATCCAGTTGAAATTGATCGAAAAGGCAAAGTGACATCCCTTCCTGGATGTGAGAGTTTCCCCGACGTAGGAGGAAATATAACTGGTTCTTTCCTTGGCATTCAAGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

452

Amino Acids

51.12

Weight (kDa)

8.73

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc_2	PF13091	302 - 339	9.2e-07	PLD-like domain
PLDc	PF00614	303 - 328	1.3e-08	Phospholipase D Active site motif
PLD_C	PF12357	375 - 445	1.1e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42010 AT2G42010 AT4G00240 AT4G00240 AT4G00240
fragaria_vesca	FvH4_7g12760
malus_domestica	MD07G1124600.v1.1
prunus_persica	Prupe.2G152100_v2.0.a1 Prupe.2G152100_v2.0.a1
pyrus_communis	pycom07g11820
rosa_chinensis	RchiOBHm_Chr1g0313111 RchiOBHm_Chr1g0351791
rosa_laevigata	RLG00000028383
rosa_multiflora	Rmu_sc0001933.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303540
rosa_rugosa	Rorug01G0221600
rosa_samantha	Rh1AG000800 Rh1AG235500 Rh1BG205900 Rh1CG005200 Rh1DG233000
rosa_wichuraiana	Rw1G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	489
AciI	CCGC	2 cut(s)	204, 489
AclWI	GGATC	3 cut(s)	95, 164, 177
AcoI	YGGCCR	2 cut(s)	563, 679
AfaI	GTAC	2 cut(s)	438, 503
AfeI	AGCGCT	1 cut(s)	980
AfiI	CCNNNNNNNGG	1 cut(s)	1313
AflII	CTTAAG	1 cut(s)	616
AgsI	TTSAA	7 cut(s)	135, 144, 340, 1154, 1243, 1256, 1349
AhlI	ACTAGT	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	1288
Alw21I	GWGCWC	2 cut(s)	642, 1110
Alw26I	GTCTC	2 cut(s)	719, 993
AlwI	GGATC	3 cut(s)	95, 164, 177
Aor51HI	AGCGCT	1 cut(s)	980
AoxI	GGCC	5 cut(s)	252, 563, 679, 1020, 1231
ApeKI	GCWGC	6 cut(s)	71, 80, 655, 857, 860, 1205
AseI	ATTAAT	1 cut(s)	323
Asp700I	GAANNNNTTC	3 cut(s)	51, 689, 1054
AspLEI	GCGC	1 cut(s)	981
AspS9I	GGNCC	2 cut(s)	1020, 1231
AsuHPI	GGTGA	2 cut(s)	355, 542
BaeI	ACNNNNGTAYC	2 cut(s)	825, 858
BalI	TGGCCA	1 cut(s)	681
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	643
Bbv12I	GWGCWC	2 cut(s)	642, 1110
BbvCI	CCTCAGC	1 cut(s)	1209
BbvI	GCAGC	6 cut(s)	67, 83, 642, 844, 872, 1192
BccI	CCATC	3 cut(s)	263, 818, 1242
BciT130I	CCWGG	1 cut(s)	1290
BciVI	GTATCC	3 cut(s)	450, 457, 1257
BcoDI	GTCTC	2 cut(s)	719, 993
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	2 cut(s)	90, 1059
BfmI	CTRYAG	2 cut(s)	819, 858
BfoI	RGCGCY	1 cut(s)	982
BfrI	CTTAAG	1 cut(s)	616
BfuI	GTATCC	3 cut(s)	450, 457, 1257
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	6 cut(s)	72, 81, 656, 858, 861, 1206
BlsI	GCNGC	6 cut(s)	73, 82, 657, 859, 862, 1207
Bme1390I	CCNGG	1 cut(s)	1290
BmgT120I	GGNCC	2 cut(s)	1020, 1231
BmiI	GGNNCC	4 cut(s)	171, 273, 1021, 1117
BmrFI	CCNGG	1 cut(s)	1290
BmsI	GCATC	1 cut(s)	1204
Bpu10I	CCTNAGC	1 cut(s)	1209
BpuEI	CTTGAG	2 cut(s)	23, 505
BsaJI	CCNNGG	4 cut(s)	284, 541, 602, 1339
Bsc4I	CCNNNNNNNGG	1 cut(s)	1313
Bse1I	ACTGG	3 cut(s)	1196, 1250, 1333
Bse3DI	GCAATG	2 cut(s)	1020, 1182
BseBI	CCWGG	1 cut(s)	1290
BseDI	CCNNGG	4 cut(s)	284, 541, 602, 1339
BseGI	GGATG	5 cut(s)	255, 1191, 1219, 1280, 1298
BseLI	CCNNNNNNNGG	1 cut(s)	1313
BseMI	GCAATG	2 cut(s)	1020, 1182
BseMII	CTCAG	2 cut(s)	617, 1200
BseNI	ACTGG	3 cut(s)	1196, 1250, 1333
BseXI	GCAGC	6 cut(s)	67, 83, 642, 844, 872, 1192
BshFI	GGCC	5 cut(s)	254, 565, 681, 1022, 1233
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	642, 1110
BslFI	GGGAC	1 cut(s)	1006
BslI	CCNNNNNNNGG	1 cut(s)	1313
BsmAI	GTCTC	2 cut(s)	719, 993
BsmFI	GGGAC	1 cut(s)	1006
BsmI	GAATGC	4 cut(s)	317, 335, 767, 1344
BsnI	GGCC	5 cut(s)	254, 565, 681, 1022, 1233
Bsp1286I	GDGCHC	2 cut(s)	642, 1110
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	5 cut(s)	100, 123, 169, 219, 1261
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	2 cut(s)	204, 489
BspANI	GGCC	5 cut(s)	254, 565, 681, 1022, 1233
BspCNI	CTCAG	2 cut(s)	618, 1201
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	4 cut(s)	171, 273, 1021, 1117
BspMAI	CTGCAG	1 cut(s)	862
BspPI	GGATC	3 cut(s)	95, 164, 177
BspT107I	GGYRCC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	616
BsrBI	CCGCTC	1 cut(s)	489
BsrDI	GCAATG	2 cut(s)	1020, 1182
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	1196, 1250, 1333
BssECI	CCNNGG	4 cut(s)	284, 541, 602, 1339
BssMI	GATC	5 cut(s)	100, 123, 169, 219, 1261
BssSI	CACGAG	1 cut(s)	643
BssT1I	CCWWGG	3 cut(s)	284, 602, 1339
Bst2BI	CACGAG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	1290
Bst4CI	ACNGT	1 cut(s)	1130
BstAFI	CTTAAG	1 cut(s)	616
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	896
BstDEI	CTNAG	2 cut(s)	626, 1209
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	5 cut(s)	255, 1191, 1219, 1280, 1298
BstH2I	RGCGCY	1 cut(s)	982
BstHHI	GCGC	1 cut(s)	981
BstKTI	GATC	5 cut(s)	103, 126, 172, 222, 1264
BstMAI	GTCTC	2 cut(s)	719, 993
BstMBI	GATC	5 cut(s)	100, 123, 169, 219, 1261
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 80, 1019, 1214
BstNI	CCWGG	1 cut(s)	1290
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	1288
BstSFI	CTRYAG	2 cut(s)	819, 858
BstV1I	GCAGC	6 cut(s)	67, 83, 642, 844, 872, 1192
BstX2I	RGATCY	2 cut(s)	123, 169
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	2 cut(s)	123, 169
BsuI	GTATCC	3 cut(s)	450, 457, 1257
BsuRI	GGCC	5 cut(s)	254, 565, 681, 1022, 1233
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	5 cut(s)	255, 1191, 1219, 1280, 1298
BtsIMutI	CAGTG	1 cut(s)	1002
Cac8I	GCNNGC	1 cut(s)	896
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	981
Cfr13I	GGNCC	2 cut(s)	1020, 1231
Csp6I	GTAC	2 cut(s)	437, 502
CviJI	RGCY	8 cut(s)	74, 254, 466, 565, 681, 818, 1022, 1233
CviKI_1	RGCY	8 cut(s)	74, 254, 466, 565, 681, 818, 1022, 1233
CviQI	GTAC	2 cut(s)	437, 502
DdeI	CTNAG	2 cut(s)	626, 1209
DpnI	GATC	5 cut(s)	102, 125, 171, 221, 1263
DpnII	GATC	5 cut(s)	100, 123, 169, 219, 1261
DraI	TTTAAA	1 cut(s)	789
EaeI	YGGCCR	2 cut(s)	563, 679
Eco130I	CCWWGG	3 cut(s)	284, 602, 1339
Eco47III	AGCGCT	1 cut(s)	980
EcoO109I	RGGNCCY	1 cut(s)	1020
EcoRII	CCWGG	1 cut(s)	1288
EcoT14I	CCWWGG	3 cut(s)	284, 602, 1339
EcoT22I	ATGCAT	2 cut(s)	317, 358
ErhI	CCWWGG	3 cut(s)	284, 602, 1339
FaqI	GGGAC	1 cut(s)	1006
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	6 cut(s)	72, 81, 656, 858, 861, 1206
FokI	GGATG	5 cut(s)	242, 1198, 1226, 1267, 1305
Fsp4HI	GCNGC	6 cut(s)	72, 81, 656, 858, 861, 1206
FspBI	CTAG	2 cut(s)	90, 1059
GlaI	GCGC	1 cut(s)	980
GluI	GCNGC	6 cut(s)	72, 81, 656, 858, 861, 1206
HaeII	RGCGCY	1 cut(s)	982
HaeIII	GGCC	5 cut(s)	254, 565, 681, 1022, 1233
HhaI	GCGC	1 cut(s)	981
Hin6I	GCGC	1 cut(s)	979
HinP1I	GCGC	1 cut(s)	979
HinfI	GANTC	7 cut(s)	29, 52, 140, 193, 400, 650, 1147
HphI	GGTGA	2 cut(s)	355, 542
Hpy166II	GTNNAC	2 cut(s)	437, 916
Hpy188I	TCNGA	4 cut(s)	123, 542, 637, 695
Hpy188III	TCNNGA	7 cut(s)	56, 104, 404, 812, 846, 1151, 1349
Hpy8I	GTNNAC	2 cut(s)	437, 916
Hpy99I	CGWCG	1 cut(s)	1313
HpyAV	CCTTC	6 cut(s)	244, 401, 521, 679, 983, 1295
HpyCH4III	ACNGT	1 cut(s)	1130
HpyCH4IV	ACGT	2 cut(s)	547, 1311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 80, 1019, 1214
HpyF3I	CTNAG	2 cut(s)	626, 1209
HpySE526I	ACGT	2 cut(s)	547, 1311
HspAI	GCGC	1 cut(s)	979
Kzo9I	GATC	5 cut(s)	100, 123, 169, 219, 1261
LmnI	GCTCC	2 cut(s)	68, 410
Lsp1109I	GCAGC	6 cut(s)	67, 83, 642, 844, 872, 1192
LweI	GCATC	1 cut(s)	1204
MaeI	CTAG	2 cut(s)	90, 1059
MaeII	ACGT	2 cut(s)	547, 1311
MaeIII	GTNAC	4 cut(s)	92, 343, 1092, 1276
MalI	GATC	5 cut(s)	102, 125, 171, 221, 1263
MbiI	CCGCTC	1 cut(s)	489
MboI	GATC	5 cut(s)	100, 123, 169, 219, 1261
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	123, 169
MhlI	GDGCHC	2 cut(s)	642, 1110
MlsI	TGGCCA	1 cut(s)	681
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	1156
MmeI	TCCRAC	3 cut(s)	24, 718, 738
Mox20I	TGGCCA	1 cut(s)	681
Mph1103I	ATGCAT	2 cut(s)	317, 358
MroXI	GAANNNNTTC	3 cut(s)	51, 689, 1054
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	5 cut(s)	153, 323, 576, 617, 788
Msp20I	TGGCCA	1 cut(s)	681
MspCI	CTTAAG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	1290
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	4 cut(s)	317, 335, 767, 1344
MvaI	CCWGG	1 cut(s)	1290
MwoI	GCNNNNNNNGC	4 cut(s)	77, 80, 1019, 1214
NcoI	CCATGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	5 cut(s)	100, 123, 169, 219, 1261
NlaIV	GGNNCC	4 cut(s)	171, 273, 1021, 1117
NmuCI	GTSAC	4 cut(s)	92, 343, 1092, 1276
NsiI	ATGCAT	2 cut(s)	317, 358
NspI	RCATGY	1 cut(s)	119
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	4 cut(s)	317, 335, 767, 1344
PdmI	GAANNNNTTC	3 cut(s)	51, 689, 1054
PfeI	GAWTC	6 cut(s)	29, 52, 140, 193, 400, 650
PfoI	TCCNGGA	1 cut(s)	1288
PkrI	GCNGC	6 cut(s)	73, 82, 657, 859, 862, 1207
PleI	GAGTC	1 cut(s)	1155
PpsI	GAGTC	1 cut(s)	1155
PshBI	ATTAAT	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	1288
PspGI	CCWGG	1 cut(s)	1288
PspN4I	GGNNCC	4 cut(s)	171, 273, 1021, 1117
PspPI	GGNCC	2 cut(s)	1020, 1231
PstI	CTGCAG	1 cut(s)	862
PsuI	RGATCY	2 cut(s)	123, 169
RsaI	GTAC	2 cut(s)	438, 503
RsaNI	GTAC	2 cut(s)	437, 502
SaqAI	TTAA	5 cut(s)	153, 323, 576, 617, 788
SatI	GCNGC	6 cut(s)	72, 81, 656, 858, 861, 1206
Sau3AI	GATC	5 cut(s)	100, 123, 169, 219, 1261
Sau96I	GGNCC	2 cut(s)	1020, 1231
SchI	GAGTC	1 cut(s)	1156
ScrFI	CCNGG	1 cut(s)	1290
SduI	GDGCHC	2 cut(s)	642, 1110
SfaNI	GCATC	1 cut(s)	1204
SfcI	CTRYAG	2 cut(s)	819, 858
SmlI	CTYRAG	3 cut(s)	38, 484, 616
SmoI	CTYRAG	3 cut(s)	38, 484, 616
SpeI	ACTAGT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	204, 489
SspMI	CTAG	2 cut(s)	90, 1059
StyD4I	CCNGG	1 cut(s)	1288
StyI	CCWWGG	3 cut(s)	284, 602, 1339
TaaI	ACNGT	1 cut(s)	1130
TaiI	ACGT	2 cut(s)	550, 1314
TaqI	TCGA	4 cut(s)	222, 920, 936, 1264
TatI	WGTACW	2 cut(s)	436, 501
TfiI	GAWTC	6 cut(s)	29, 52, 140, 193, 400, 650
Tru1I	TTAA	5 cut(s)	153, 323, 576, 617, 788
Tru9I	TTAA	5 cut(s)	153, 323, 576, 617, 788
TscAI	CASTG	1 cut(s)	1009
TseFI	GTSAC	4 cut(s)	92, 343, 1092, 1276
TseI	GCWGC	6 cut(s)	71, 80, 655, 857, 860, 1205
Tsp45I	GTSAC	4 cut(s)	92, 343, 1092, 1276
TspDTI	ATGAA	6 cut(s)	17, 324, 392, 420, 434, 1202
TspRI	CASTG	1 cut(s)	1009
Vha464I	CTTAAG	1 cut(s)	616
VspI	ATTAAT	1 cut(s)	323
XceI	RCATGY	1 cut(s)	119
XmnI	GAANNNNTTC	3 cut(s)	51, 689, 1054
XspI	CTAG	2 cut(s)	90, 1059
Zsp2I	ATGCAT	2 cut(s)	317, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.