Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008961

Physical Location & Seq

Genomic Coordinates Forward (+)

44597432 .. 44603629

Gene Structure 6198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG235500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3411 bp

ATGGATAACAATGGTTCTCCACCACCATATTATCCACCATACCAGAATGCTTACCCACCATACCCACATCACCCTTCTTCTCAATACCCACCTCCTCCTTCAGATCAATACCATCCTTCTCAATACCCTCCTCCACCAGATCAATACCCTCCTGCTCCTGCTCCAGCTCCATATCCGTACCCTTATAGCTCATACCCTCCTTACCAACATGCCCCATATCCATACCCTTCTTCAGCTTCAACTCCTTCATCTGCATACCCTCCCTCAGCTCCACCTCCTTCCTCTGCATACCCTCCCTCAGCTCCACCTCCCTCATCTGCATACCCTCCATCACCTCCACATTCTTCAACTACATACCCTCCATCACCTACATCATATCCACAATCACCATCCTCAGCCTCTTCCCATTCGGGCCCTTTCGACTACAATCAGCCCCCTTATCCCTATCCATACCCTCCGGCCCGGCCAAGTACAAATAGTGGTCCTTTGCCAACCCTTCAACACCAGGGGAGTGGTAGTTTTAAGTATGATTCTAACCATTATCAGTACCAGCAGTCAGGGATGTACCCGCCAGTAGAAAGCCCCCACCAATCCCCTCTGCGTGCCAGTAGGTTCTCTCTTCACCAGAGGTATGATAGTTGTCCTGTAGGAGTTGAGGCTTCTGGTTACCCCCCAGTGGATCAGCTTTTGAGTAATATGCATTTGTCTGAGAACCAGCCAACTGATAATTCAGTGGGGCCGTCAGCACCTTCGAGTGCAAGGTGTGATAAGGTGGGGGAGTTTTATGGGTATCCTAATAGCTCCTTTACGACTTGGGAGGCGAGTAGTACTTATTCAGGGAATCAGACTGAACCGCCAAGTCCTGTTTTGACCCCAACAACTTCAATCAATGGGTCTCAACATAGCCAGAGTTTGCAGATTGTTCCATTGCAGAATAAAGGGTCCTTGAAGGTTTTGCTCTTACATGGGAATCTGGATATTTGGGTGTATGAAGCGAAAAACCTGCCGAATATGGACATGTTCCACAAGACTTTGGGGGATATGTTTATGAAGTTTCCAGGGACTGGAAGCAACAAAGCTGATGGGCAGTCGAACCGTGGGATTACTAGTGATCCGTATGTTTCAATTTCGGTTGCAAATGCTGTAATTGGGAGGACATATGTGATAAGCAATTCTGAATTTCCTGTTTGGAGGCAACATTTCAATGTTCCAGTAGCGCATTATGCAGCTGAAGTGCACTTTGTTGTTAAAGATAGTGATCTTGTGGGATCCCAGCTTATTGGAGTCGTGGCAATTCCAGTAGAACATATATACTTGGGAGCAAGAGTTGAGGGAATTTACCCAATCCTGAATGCTAGTGGGAAGCCTTGTAAACCCGGAGCTGTCCTAAGGCTTTCAATTCAGTACACTCCAATTGAGAGATTGAGCATTTACCATAATGGAGTTGGGGCAGGCCCTGATTACTATGGGGTTCCTGGCACCTATTTTCCTCTTAGGACAGGTGGAAAGGTAACTCTTTACCAAGATGCTCACGTCCCAGATGGTTGTCTTCCGAACTTGATTTTAGGTGGGGGGAGGCCATATGTGCATGGGAAGTGTTGGCATGACATTTTTGATGCAATACGTCAAGCACGGCGTTTGATTTACATTGCTGGGTGGTCGGTTTGGCACAATGTTAAGCTGGTTCGGGATGGTGGTGCAGCACTAAATGTCACCATAGGTGATCTTCTGAGATCCAAGTCCCAGGAAGGAGTGAGAGTACTGCTGCTTGTGTGGGATGACCCCACTTCAAGGAGCATTTTGGGTTATAAAACTGATGGAATCATGCAAACCCATGATGAGGAAATTCGGCGGTTTTTTAAGCACTCTTCGGTGCAAGTGTTGCTTTGCCCCCGCACTGCTGGAAAACGACATAGCTGGGTTAAGCAAAGGGAAGTTGGGACGATCTATACGCATCATCAGAAAACCGTAATTGTGGATGCTGATGCTGGCCATAATAGGAGGAAAATCCTAGCTTTTGTCGGAGGACTTGACTTATGTGATGGTCGATATGATACTCCAAACCATGAGCTATTTAAGACGTTGAAAACAGTGCATAAAGATGACTATCACAACCCAACGTTCACGGGTAGCACCGCTGGTTGTCCAAGAGAGCCATGGCATGATTTGCACTCTAGGCTTGATGGTCCAGCAGCATATGATGTTCTGACCAACTTTGAGGAGCGCTGGTTAAAGGCTTCAAAACCACAAGGGATGAAGAAACTGAAAAAATCTTACAATGATTCTTTGCTCAAGTTGGAAAGGATTCCAGACATAATTGGAGCAGCCCATGCTGCTTCCACTAGTGACAACGATCCTGAAACTTGGCATGTTCAGATCTTTCGTTCAATTGATTCAAACTCTGTTAAAGGTTTCCCAAAGGATCCAAAAGAAGCAACAAGCAAGAATCTGGTATGCGGAAAGAATGTGCTGATCGACATGAGCATACATACAGCATATGTGAAGGCCATCCGTGCTGCCCAGCATTTCATATATGTAGAGAATCAATATTTTATTGGGTCTTCATACAATTGGAATCAATACAAAGACTTAGGTGCTAATAATTTGATTCCCATGGAAATTGCCCTTAAGATTGCTGAGAAAATCAGAGCACATGAGAGATTCGCTGCGTATATTGTTATTCCAATGTGGCCAGAAGGTGTTCCGACTGGTGCAGCAACACAAAGAATTCTATTTTGGCAGCACAAGACAATGCAAATGATGTATGAGACAATTTACAAGGCGTTAGTGGAAATGGGGTTGGAGGGTGCATTCTGCCCCCAAGACTATTTAAACTTCTTTTGTCTTGGAAATCGTGAGGCTATAGATGGAAATGATACATCTGTTTCTGGAAGTCCTGCTGCAGCAAACACTCCACAGGCATTTAGTCAAAAAAGCAGGCGATTTATGATTTATGTTCACTCGAAAGGTATGATAGTCGATGACGAGTTTGTAATAGTGGGGTCTGCAAACATAAATCAGCGCTCTATGGAAGGGACAAGAGACACTGAAATAGCAATGGGGGCCTACCAACCTCATCATACATGGGCAAGAAATCATTCTAGTCCTTTCGGAGAGATATATGGATATAGAATGTCACTATGGGCAGAGCACACAGGAACCATTGAGGACTGTTTTAGAGAACCAGAGAGTCTTGAATGTGTTAGGAGAGTTAGAGCAATGGGTGAGATGAATTGGAAACAATTTGCTGCTGAGCATGCAACAGAGATGACGGGTCATCTATTGAAGTATCCAGTTGAAATTGATCGAAAAGGCAAAGTGACATCCCTTCCTGGATGTGAGAGTTTCCCCGACGTAGGAGGAAATATAACTGGTTCTTTCCTTGGCATTCAAGAAAATTTGACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

1136

Amino Acids

126.12

Weight (kDa)

6.96

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	323 - 448	2.1e-13	C2 domain
PLDc	PF00614	650 - 683	1e-05	Phospholipase D Active site motif
PLDc_2	PF13091	983 - 1020	2.3e-06	PLD-like domain
PLDc	PF00614	984 - 1009	2e-07	Phospholipase D Active site motif
PLD_C	PF12357	1056 - 1126	6.7e-31	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42010 AT2G42010 AT4G00240 AT4G00240 AT4G00240
fragaria_vesca	FvH4_7g12760
malus_domestica	MD07G1124600.v1.1
prunus_persica	Prupe.2G152100_v2.0.a1 Prupe.2G152100_v2.0.a1
pyrus_communis	pycom07g11820
rosa_chinensis	RchiOBHm_Chr1g0313111 RchiOBHm_Chr1g0351791
rosa_laevigata	RLG00000028383
rosa_multiflora	Rmu_sc0001933.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303540
rosa_rugosa	Rorug01G0221600
rosa_samantha	Rh1AG000800 Rh1AG235500 Rh1BG205900 Rh1CG005200 Rh1DG233000
rosa_wichuraiana	Rw1G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1809
Acc36I	ACCTGC	1 cut(s)	1011
AccB1I	GGYRCC	1 cut(s)	1478
AccB7I	CCANNNNNTGG	1 cut(s)	1064
AciI	CCGC	6 cut(s)	569, 854, 1852, 1894, 2136, 2457
AclI	AACGTT	1 cut(s)	2120
AclWI	GGATC	8 cut(s)	687, 1106, 1263, 1276, 1728, 2348, 2417, 2430
AcoI	YGGCCR	3 cut(s)	464, 1990, 2690
AcsI	RAATTY	5 cut(s)	1178, 1335, 1845, 2727, 3397
AcuI	CTGAAG	3 cut(s)	84, 216, 1251
AfaI	GTAC	7 cut(s)	179, 472, 548, 566, 829, 1406, 1761
AfeI	AGCGCT	2 cut(s)	2225, 3023
AfiI	CCNNNNNNNGG	5 cut(s)	676, 1064, 1791, 1840, 3356
AflII	CTTAAG	1 cut(s)	2627
AflIII	ACRYGT	1 cut(s)	1017
AhlI	ACTAGT	2 cut(s)	1106, 2342
AjiI	CACGTC	1 cut(s)	1534
AjnI	CCWGG	5 cut(s)	504, 1057, 1474, 1743, 3331
AjuI	GAANNNNNNNTTGG	4 cut(s)	712, 744, 2719, 2751
Alw21I	GWGCWC	3 cut(s)	1239, 2653, 3153
Alw26I	GTCTC	3 cut(s)	900, 2762, 3036
Alw44I	GTGCAC	1 cut(s)	1235
AlwI	GGATC	8 cut(s)	687, 1106, 1263, 1276, 1728, 2348, 2417, 2430
AlwNI	CAGNNNCTG	2 cut(s)	1064, 1457
Aor51HI	AGCGCT	2 cut(s)	2225, 3023
ApaI	GGGCCC	1 cut(s)	416
ApaLI	GTGCAC	1 cut(s)	1235
ApoI	RAATTY	5 cut(s)	1178, 1335, 1845, 2727, 3397
Asp700I	GAANNNNTTC	3 cut(s)	2304, 2700, 3097
AspLEI	GCGC	3 cut(s)	1219, 2226, 3024
AspS9I	GGNCC	9 cut(s)	412, 413, 460, 482, 737, 942, 1454, 2186, 3063
AsuC2I	CCSGG	2 cut(s)	463, 1377
AsuHPI	GGTGA	8 cut(s)	62, 324, 357, 378, 614, 1705, 1733, 3236
AvaII	GGWCC	3 cut(s)	482, 942, 2186
AxyI	CCTNAGG	1 cut(s)	1388
BaeGI	GKGCMC	2 cut(s)	416, 1239
BaeI	ACNNNNGTAYC	2 cut(s)	2868, 2901
BalI	TGGCCA	2 cut(s)	1992, 2692
BamHI	GGATCC	2 cut(s)	1268, 2422
BanI	GGYRCC	1 cut(s)	1478
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	1541, 2553
Bbv12I	GWGCWC	3 cut(s)	1239, 2653, 3153
BbvCI	CCTCAGC	3 cut(s)	265, 298, 394
BceAI	ACGGC	2 cut(s)	724, 1649
BcgI	CGANNNNNNTGC	2 cut(s)	985, 1019
BciT130I	CCWGG	5 cut(s)	506, 1059, 1476, 1745, 3333
BciVI	GTATCC	2 cut(s)	801, 3300
BcnI	CCSGG	2 cut(s)	463, 1377
BcoDI	GTCTC	3 cut(s)	900, 2762, 3036
BcuI	ACTAGT	2 cut(s)	1106, 2342
BfaI	CTAG	6 cut(s)	1107, 1356, 2012, 2175, 2343, 3102
BfmI	CTRYAG	3 cut(s)	645, 2862, 2901
BfoI	RGCGCY	2 cut(s)	2227, 3025
BfrI	CTTAAG	1 cut(s)	2627
BfuAI	ACCTGC	1 cut(s)	1011
BfuI	GTATCC	2 cut(s)	801, 3300
BglII	AGATCT	1 cut(s)	2376
BlpI	GCTNAGC	1 cut(s)	3252
BmcAI	AGTACT	2 cut(s)	829, 1761
Bme1390I	CCNGG	7 cut(s)	463, 506, 1059, 1377, 1476, 1745, 3333
Bme18I	GGWCC	3 cut(s)	482, 942, 2186
BmgBI	CACGTC	1 cut(s)	1534
BmgT120I	GGNCC	9 cut(s)	412, 413, 460, 482, 737, 942, 1454, 2186, 3063
BmiI	GGNNCC	9 cut(s)	414, 738, 943, 1270, 1473, 1480, 2424, 3064, 3160
BmrFI	CCNGG	7 cut(s)	463, 506, 1059, 1377, 1476, 1745, 3333
BmrI	ACTGGG	1 cut(s)	668
BmsI	GCATC	5 cut(s)	1516, 1606, 1963, 1969, 1975
BmuI	ACTGGG	1 cut(s)	668
BpiI	GAAGAC	2 cut(s)	1541, 2553
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	3 cut(s)	265, 298, 394
Bpu1102I	GCTNAGC	1 cut(s)	3252
BpuEI	CTTGAG	1 cut(s)	2276
BpuMI	CCSGG	2 cut(s)	463, 1377
BsaBI	GATNNNNATC	2 cut(s)	1257, 2106
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	7 cut(s)	505, 1058, 1096, 1743, 2156, 2613, 3382
Bsc4I	CCNNNNNNNGG	5 cut(s)	676, 1064, 1791, 1840, 3356
Bse1I	ACTGG	9 cut(s)	572, 606, 674, 1069, 1211, 1298, 2713, 3293, 3376
Bse21I	CCTNAGG	1 cut(s)	1388
Bse3DI	GCAATG	4 cut(s)	926, 1647, 3063, 3225
Bse8I	GATNNNNATC	2 cut(s)	1257, 2106
BseBI	CCWGG	5 cut(s)	506, 1059, 1476, 1745, 3333
BseDI	CCNNGG	7 cut(s)	505, 1058, 1096, 1743, 2156, 2613, 3382
BseJI	GATNNNNATC	2 cut(s)	1257, 2106
BseLI	CCNNNNNNNGG	5 cut(s)	676, 1064, 1791, 1840, 3356
BseMI	GCAATG	4 cut(s)	926, 1647, 3063, 3225
BseMII	CTCAG	7 cut(s)	279, 312, 408, 699, 1721, 2628, 3243
BseNI	ACTGG	9 cut(s)	572, 606, 674, 1069, 1211, 1298, 2713, 3293, 3376
BseRI	GAGGAG	3 cut(s)	84, 120, 2234
BseSI	GKGCMC	2 cut(s)	416, 1239
BseYI	CCCAGC	4 cut(s)	1272, 1652, 1917, 2520
BsgI	GTGCAG	2 cut(s)	1719, 2733
BshNI	GGYRCC	1 cut(s)	1478
BsiHKAI	GWGCWC	3 cut(s)	1239, 2653, 3153
BsiSI	CCGG	3 cut(s)	458, 463, 1377
BslFI	GGGAC	5 cut(s)	1075, 1520, 1726, 1954, 3049
BslI	CCNNNNNNNGG	5 cut(s)	676, 1064, 1791, 1840, 3356
BsmAI	GTCTC	3 cut(s)	900, 2762, 3036
BsmFI	GGGAC	5 cut(s)	1075, 1520, 1726, 1954, 3049
BsmI	GAATGC	4 cut(s)	52, 1357, 2810, 3387
Bso31I	GGTCTC	1 cut(s)	900
Bsp120I	GGGCCC	1 cut(s)	412
Bsp1286I	GDGCHC	4 cut(s)	416, 1239, 2653, 3153
Bsp1720I	GCTNAGC	1 cut(s)	3252
Bsp19I	CCATGG	2 cut(s)	2156, 2613
BspACI	CCGC	6 cut(s)	569, 854, 1852, 1894, 2136, 2457
BspCNI	CTCAG	7 cut(s)	278, 311, 407, 700, 1722, 2629, 3244
BspLI	GGNNCC	9 cut(s)	414, 738, 943, 1270, 1473, 1480, 2424, 3064, 3160
BspMAI	CTGCAG	1 cut(s)	2905
BspMI	ACCTGC	1 cut(s)	1011
BspPI	GGATC	8 cut(s)	687, 1106, 1263, 1276, 1728, 2348, 2417, 2430
BspT107I	GGYRCC	1 cut(s)	1478
BspTI	CTTAAG	1 cut(s)	2627
BspTNI	GGTCTC	1 cut(s)	900
BsrDI	GCAATG	4 cut(s)	926, 1647, 3063, 3225
BsrI	ACTGG	9 cut(s)	572, 606, 674, 1069, 1211, 1298, 2713, 3293, 3376
BssECI	CCNNGG	7 cut(s)	505, 1058, 1096, 1743, 2156, 2613, 3382
BssT1I	CCWWGG	3 cut(s)	2156, 2613, 3382
Bst2UI	CCWGG	5 cut(s)	506, 1059, 1476, 1745, 3333
Bst4CI	ACNGT	4 cut(s)	1097, 1969, 2092, 3173
Bst6I	CTCTTC	3 cut(s)	406, 624, 1873
BstAFI	CTTAAG	1 cut(s)	2627
BstAPI	GCANNNNNTGC	3 cut(s)	1882, 2167, 2330
BstC8I	GCNNGC	5 cut(s)	603, 1453, 1990, 2939, 3258
BstDSI	CCRYGG	3 cut(s)	1096, 2156, 2613
BstEII	GGTNACC	1 cut(s)	665
BstH2I	RGCGCY	2 cut(s)	2227, 3025
BstHHI	GCGC	3 cut(s)	1219, 2226, 3024
BstMAI	GTCTC	3 cut(s)	900, 2762, 3036
BstNI	CCWGG	5 cut(s)	506, 1059, 1476, 1745, 3333
BstNSI	RCATGY	4 cut(s)	212, 1021, 2372, 3260
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	7 cut(s)	461, 504, 1057, 1375, 1474, 1743, 3331
BstSFI	CTRYAG	3 cut(s)	645, 2862, 2901
BstSLI	GKGCMC	2 cut(s)	416, 1239
BstV2I	GAAGAC	2 cut(s)	1541, 2553
BstX2I	RGATCY	4 cut(s)	1268, 1733, 2376, 2422
BstXI	CCANNNNNNTGG	2 cut(s)	512, 1280
BstYI	RGATCY	4 cut(s)	1268, 1733, 2376, 2422
Bsu36I	CCTNAGG	1 cut(s)	1388
BsuI	GTATCC	2 cut(s)	801, 3300
BtgI	CCRYGG	3 cut(s)	1096, 2156, 2613
BtrI	CACGTC	1 cut(s)	1534
BtsI	GCAGTG	1 cut(s)	1896
BtsIMutI	CAGTG	5 cut(s)	681, 738, 1896, 2097, 3045
BveI	ACCTGC	1 cut(s)	1011
Cac8I	GCNNGC	5 cut(s)	603, 1453, 1990, 2939, 3258
CaiI	CAGNNNCTG	2 cut(s)	1064, 1457
CfoI	GCGC	3 cut(s)	1219, 2226, 3024
Cfr13I	GGNCC	9 cut(s)	412, 413, 460, 482, 737, 942, 1454, 2186, 3063
Csp6I	GTAC	7 cut(s)	178, 471, 547, 565, 828, 1405, 1760
CviQI	GTAC	7 cut(s)	178, 471, 547, 565, 828, 1405, 1760
DraI	TTTAAA	1 cut(s)	2832
EaeI	YGGCCR	3 cut(s)	464, 1990, 2690
Eam1104I	CTCTTC	3 cut(s)	406, 624, 1873
EarI	CTCTTC	3 cut(s)	406, 624, 1873
Eco130I	CCWWGG	3 cut(s)	2156, 2613, 3382
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	900
Eco47I	GGWCC	3 cut(s)	482, 942, 2186
Eco47III	AGCGCT	2 cut(s)	2225, 3023
Eco57I	CTGAAG	3 cut(s)	84, 216, 1251
Eco81I	CCTNAGG	1 cut(s)	1388
Eco91I	GGTNACC	1 cut(s)	665
EcoO109I	RGGNCCY	4 cut(s)	413, 942, 1454, 3063
EcoO65I	GGTNACC	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	2727
EcoRII	CCWGG	5 cut(s)	504, 1057, 1474, 1743, 3331
EcoT14I	CCWWGG	3 cut(s)	2156, 2613, 3382
EcoT22I	ATGCAT	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	3 cut(s)	2156, 2613, 3382
FalI	AAGNNNNNCTT	2 cut(s)	1869, 1901
FaqI	GGGAC	5 cut(s)	1075, 1520, 1726, 1954, 3049
FauI	CCCGC	2 cut(s)	576, 1901
FauNDI	CATATG	4 cut(s)	1159, 1582, 2197, 2497
FriOI	GRGCYC	1 cut(s)	416
FspBI	CTAG	6 cut(s)	1107, 1356, 2012, 2175, 2343, 3102
GlaI	GCGC	3 cut(s)	1218, 2225, 3023
GsaI	CCCAGC	4 cut(s)	1276, 1656, 1921, 2524
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	2 cut(s)	2227, 3025
HapII	CCGG	3 cut(s)	458, 463, 1377
HhaI	GCGC	3 cut(s)	1219, 2226, 3024
Hin6I	GCGC	3 cut(s)	1217, 2224, 3022
HinP1I	GCGC	3 cut(s)	1217, 2224, 3022
HpaII	CCGG	3 cut(s)	458, 463, 1377
HphI	GGTGA	8 cut(s)	62, 324, 357, 378, 614, 1705, 1733, 3236
Hpy166II	GTNNAC	5 cut(s)	1237, 1373, 1407, 2124, 2959
Hpy188III	TCNNGA	9 cut(s)	974, 1348, 1688, 2309, 2357, 2855, 2889, 3194, 3392
Hpy8I	GTNNAC	5 cut(s)	1237, 1373, 1407, 2124, 2959
Hpy99I	CGWCG	1 cut(s)	3356
HpyCH4III	ACNGT	4 cut(s)	1097, 1969, 2092, 3173
HpyCH4IV	ACGT	5 cut(s)	1533, 1624, 2081, 2120, 3354
HpySE526I	ACGT	5 cut(s)	1533, 1624, 2081, 2120, 3354
HspAI	GCGC	3 cut(s)	1217, 2224, 3022
LweI	GCATC	5 cut(s)	1516, 1606, 1963, 1969, 1975
MaeI	CTAG	6 cut(s)	1107, 1356, 2012, 2175, 2343, 3102
MaeII	ACGT	5 cut(s)	1533, 1624, 2081, 2120, 3354
MaeIII	GTNAC	6 cut(s)	665, 1510, 1711, 2345, 3135, 3319
MfeI	CAATTG	3 cut(s)	1413, 2388, 2569
MflI	RGATCY	4 cut(s)	1268, 1733, 2376, 2422
MhlI	GDGCHC	4 cut(s)	416, 1239, 2653, 3153
MlsI	TGGCCA	2 cut(s)	1992, 2692
MluNI	TGGCCA	2 cut(s)	1992, 2692
MlyI	GAGTC	2 cut(s)	1293, 3199
MmeI	TCCRAC	4 cut(s)	2002, 2277, 2729, 2781
Mox20I	TGGCCA	2 cut(s)	1992, 2692
Mph1103I	ATGCAT	1 cut(s)	702
MroXI	GAANNNNTTC	3 cut(s)	2304, 2700, 3097
MscI	TGGCCA	2 cut(s)	1992, 2692
MslI	CAYNNNNRTG	2 cut(s)	1203, 2100
Msp20I	TGGCCA	2 cut(s)	1992, 2692
MspA1I	CMGCKG	2 cut(s)	1229, 2138
MspCI	CTTAAG	1 cut(s)	2627
MspI	CCGG	3 cut(s)	458, 463, 1377
MspR9I	CCNGG	7 cut(s)	463, 506, 1059, 1377, 1476, 1745, 3333
MunI	CAATTG	3 cut(s)	1413, 2388, 2569
Mva1269I	GAATGC	4 cut(s)	52, 1357, 2810, 3387
MvaI	CCWGG	5 cut(s)	506, 1059, 1476, 1745, 3333
NciI	CCSGG	2 cut(s)	463, 1377
NcoI	CCATGG	2 cut(s)	2156, 2613
NdeI	CATATG	4 cut(s)	1159, 1582, 2197, 2497
NlaIV	GGNNCC	9 cut(s)	414, 738, 943, 1270, 1473, 1480, 2424, 3064, 3160
NmuCI	GTSAC	4 cut(s)	1711, 2345, 3135, 3319
NsiI	ATGCAT	1 cut(s)	702
NspI	RCATGY	4 cut(s)	212, 1021, 2372, 3260
PaeI	GCATGC	1 cut(s)	3260
PciI	ACATGT	1 cut(s)	1017
PctI	GAATGC	4 cut(s)	52, 1357, 2810, 3387
PdmI	GAANNNNTTC	3 cut(s)	2304, 2700, 3097
PflMI	CCANNNNNTGG	1 cut(s)	1064
PfoI	TCCNGGA	1 cut(s)	3331
PleI	GAGTC	2 cut(s)	1292, 3198
PpsI	GAGTC	2 cut(s)	1292, 3198
PpuMI	RGGWCCY	1 cut(s)	942
PscI	ACATGT	1 cut(s)	1017
PsiI	TTATAA	1 cut(s)	1809
Psp1406I	AACGTT	1 cut(s)	2120
Psp5II	RGGWCCY	1 cut(s)	942
Psp6I	CCWGG	5 cut(s)	504, 1057, 1474, 1743, 3331
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	4 cut(s)	1272, 1652, 1917, 2520
PspGI	CCWGG	5 cut(s)	504, 1057, 1474, 1743, 3331
PspN4I	GGNNCC	9 cut(s)	414, 738, 943, 1270, 1473, 1480, 2424, 3064, 3160
PspOMI	GGGCCC	1 cut(s)	412
PspPI	GGNCC	9 cut(s)	412, 413, 460, 482, 737, 942, 1454, 2186, 3063
PspPPI	RGGWCCY	1 cut(s)	942
PstI	CTGCAG	1 cut(s)	2905
PstNI	CAGNNNCTG	2 cut(s)	1064, 1457
PsuI	RGATCY	4 cut(s)	1268, 1733, 2376, 2422
PvuII	CAGCTG	1 cut(s)	1229
RsaI	GTAC	7 cut(s)	179, 472, 548, 566, 829, 1406, 1761
RsaNI	GTAC	7 cut(s)	178, 471, 547, 565, 828, 1405, 1760
RseI	CAYNNNNRTG	2 cut(s)	1203, 2100
Sau96I	GGNCC	9 cut(s)	412, 413, 460, 482, 737, 942, 1454, 2186, 3063
ScaI	AGTACT	2 cut(s)	829, 1761
SchI	GAGTC	2 cut(s)	1293, 3199
ScrFI	CCNGG	7 cut(s)	463, 506, 1059, 1377, 1476, 1745, 3333
SduI	GDGCHC	4 cut(s)	416, 1239, 2653, 3153
SfaNI	GCATC	5 cut(s)	1516, 1606, 1963, 1969, 1975
SfcI	CTRYAG	3 cut(s)	645, 2862, 2901
SinI	GGWCC	3 cut(s)	482, 942, 2186
SmiMI	CAYNNNNRTG	2 cut(s)	1203, 2100
SmlI	CTYRAG	2 cut(s)	2291, 2627
SmoI	CTYRAG	2 cut(s)	2291, 2627
SpeI	ACTAGT	2 cut(s)	1106, 2342
SphI	GCATGC	1 cut(s)	3260
SsiI	CCGC	6 cut(s)	569, 854, 1852, 1894, 2136, 2457
SspI	AATATT	1 cut(s)	2549
SspMI	CTAG	6 cut(s)	1107, 1356, 2012, 2175, 2343, 3102
StyD4I	CCNGG	7 cut(s)	461, 504, 1057, 1375, 1474, 1743, 3331
StyI	CCWWGG	3 cut(s)	2156, 2613, 3382
TaaI	ACNGT	4 cut(s)	1097, 1969, 2092, 3173
TaiI	ACGT	5 cut(s)	1536, 1627, 2084, 2123, 3357
TaqI	TCGA	8 cut(s)	420, 752, 1091, 2047, 2475, 2963, 2979, 3307
TatI	WGTACW	4 cut(s)	470, 827, 1404, 1759
TscAI	CASTG	5 cut(s)	681, 738, 1903, 2097, 3052
TseFI	GTSAC	4 cut(s)	1711, 2345, 3135, 3319
Tsp45I	GTSAC	4 cut(s)	1711, 2345, 3135, 3319
TspDTI	ATGAA	7 cut(s)	237, 1005, 1064, 2270, 2518, 2553, 3245
TspGWI	ACGGA	3 cut(s)	165, 1104, 2501
TspRI	CASTG	5 cut(s)	681, 738, 1903, 2097, 3052
Van91I	CCANNNNNTGG	1 cut(s)	1064
Vha464I	CTTAAG	1 cut(s)	2627
VneI	GTGCAC	1 cut(s)	1235
VpaK11BI	GGWCC	3 cut(s)	482, 942, 2186
XapI	RAATTY	5 cut(s)	1178, 1335, 1845, 2727, 3397
XceI	RCATGY	4 cut(s)	212, 1021, 2372, 3260
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1442, 2154
XmnI	GAANNNNTTC	3 cut(s)	2304, 2700, 3097
XspI	CTAG	6 cut(s)	1107, 1356, 2012, 2175, 2343, 3102
ZrmI	AGTACT	2 cut(s)	829, 1761
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.