Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008961

Physical Location & Seq

Genomic Coordinates Forward (+)

227017 .. 230297

Gene Structure 3281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGAAACTGAAAAGAACCTACAATGATTCTTTGCTCAAGTTGGAAAGGATTCCAGACATAATTGGAGCAGCCCATGCTGCTTCCACTAGTGACAACGATCCTGAAACTTGGCATGTTCAGATCTTTCGTTCAATTGATTCAAACTCTGTTAAAGGTTTCCCAAAGGATCCAAAAGAAGCAAAAAGCAAGAATCTGGTATGCGGAAAGAATGTGCTGATCGACATGAGCATACAAACAGCATATGTGAAGGCCATCCTGTTGGAGAATCAATATTTTATTGGGTCTTCATACAATTGGAATCAATACAAAGACTTAGGTGCTAATAATTTGTTCCCATGGAAATTGCCCTTAAGATTGCTGAGAAAATCAGAGCACACGAGAGATTCGCTGCGTATATTGTTATTCCAATGTGGCCAGAAGGTGTTCCGACAGGTGCAGCAACACAAAGAATTCTATTTTGCACAAGACAATGCAAATGATGCTATAGATGGAAATGATACATCTGTTTCTGGAAGTCCTGCTGCAGCAAACACTCCACAGGCATTTAGTCAAAGAAGCAGGCGATTTATGATTTATGTTCACTCGAAAGGTATGATAGTCGATGACGAGTATGTAATAGTGGGGTCTGCAAACATAAATCAGCGCTCTATGGAAGGGACAAGAGACACTGAAATAGCAATGGGGGCCTACCAACCTCATCATACATGGGCAAGAAATCATTCTAGTCCTTTTGGAGAGATATATGGATATAGAATGTCACTATGGGCAGAGCACACAGGAACCATTGAGGACTGTTTTAGAGAACCAGAGAGTCTTGAATGTGTTAGGAGAGTTAGAGCAATGGGTGGGATGAACTGGAAACAATTTGCTGCTGAGGATGCAACAGAGATGACGGGCCATCTATTGAAGTATCCAGTTGAAATTGATCGAAAAGGCAAAGTGACATCCCTTCCTGGATGTGAGAGTTTCCCCGACGTAGGAGGAAATATAACTGGTTCTTTCCTTGGCATTCAAGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

341

Amino Acids

38.6

Weight (kDa)

7.68

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc_2	PF13091	190 - 228	5.3e-07	PLD-like domain
PLDc	PF00614	192 - 217	9.1e-09	Phospholipase D Active site motif
PLD_C	PF12357	264 - 334	7.3e-31	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42010 AT2G42010 AT4G00240 AT4G00240 AT4G00240
fragaria_vesca	FvH4_7g12760
malus_domestica	MD07G1124600.v1.1
prunus_persica	Prupe.2G152100_v2.0.a1 Prupe.2G152100_v2.0.a1
pyrus_communis	pycom07g11820
rosa_chinensis	RchiOBHm_Chr1g0313111 RchiOBHm_Chr1g0351791
rosa_laevigata	RLG00000028383
rosa_multiflora	Rmu_sc0001933.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303540
rosa_rugosa	Rorug01G0221600
rosa_samantha	Rh1AG000800 Rh1AG235500 Rh1BG205900 Rh1CG005200 Rh1DG233000
rosa_wichuraiana	Rw1G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	3 cut(s)	95, 164, 177
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	452
AfeI	AGCGCT	1 cut(s)	647
AfiI	CCNNNNNNNGG	1 cut(s)	980
AflII	CTTAAG	1 cut(s)	352
AgsI	TTSAA	6 cut(s)	135, 144, 821, 910, 923, 1016
AhlI	ACTAGT	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	955
Alw21I	GWGCWC	2 cut(s)	378, 777
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	3 cut(s)	95, 164, 177
Aor51HI	AGCGCT	1 cut(s)	647
AoxI	GGCC	4 cut(s)	252, 415, 687, 898
ApeKI	GCWGC	7 cut(s)	71, 80, 391, 439, 524, 527, 872
ApoI	RAATTY	1 cut(s)	452
Asp700I	GAANNNNTTC	3 cut(s)	51, 425, 721
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	2 cut(s)	687, 898
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BalI	TGGCCA	1 cut(s)	417
BamHI	GGATCC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	378, 777
BbvCI	CCTCAGC	1 cut(s)	876
BbvI	GCAGC	7 cut(s)	67, 83, 378, 451, 511, 539, 859
BccI	CCATC	3 cut(s)	263, 485, 909
BciT130I	CCWGG	1 cut(s)	957
BciVI	GTATCC	1 cut(s)	924
BcoDI	GTCTC	1 cut(s)	660
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	2 cut(s)	90, 726
BfmI	CTRYAG	2 cut(s)	486, 525
BfoI	RGCGCY	1 cut(s)	649
BfrI	CTTAAG	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	924
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	7 cut(s)	72, 81, 392, 440, 525, 528, 873
BlsI	GCNGC	7 cut(s)	73, 82, 393, 441, 526, 529, 874
Bme1390I	CCNGG	1 cut(s)	957
BmgT120I	GGNCC	2 cut(s)	687, 898
BmiI	GGNNCC	3 cut(s)	171, 688, 784
BmrFI	CCNGG	1 cut(s)	957
BmsI	GCATC	2 cut(s)	472, 871
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	338, 1006
Bsc4I	CCNNNNNNNGG	1 cut(s)	980
Bse1I	ACTGG	3 cut(s)	863, 917, 1000
Bse3DI	GCAATG	2 cut(s)	687, 849
BseBI	CCWGG	1 cut(s)	957
BseDI	CCNNGG	2 cut(s)	338, 1006
BseGI	GGATG	5 cut(s)	255, 858, 886, 947, 965
BseLI	CCNNNNNNNGG	1 cut(s)	980
BseMI	GCAATG	2 cut(s)	687, 849
BseMII	CTCAG	2 cut(s)	353, 867
BseNI	ACTGG	3 cut(s)	863, 917, 1000
BseXI	GCAGC	7 cut(s)	67, 83, 378, 451, 511, 539, 859
BsgI	GTGCAG	1 cut(s)	458
BshFI	GGCC	4 cut(s)	254, 417, 689, 900
BsiHKAI	GWGCWC	2 cut(s)	378, 777
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	1 cut(s)	980
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	1011
BsnI	GGCC	4 cut(s)	254, 417, 689, 900
Bsp1286I	GDGCHC	2 cut(s)	378, 777
Bsp143I	GATC	5 cut(s)	100, 123, 169, 219, 928
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	4 cut(s)	254, 417, 689, 900
BspCNI	CTCAG	2 cut(s)	354, 868
BspLI	GGNNCC	3 cut(s)	171, 688, 784
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	3 cut(s)	95, 164, 177
BspTI	CTTAAG	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	687, 849
BsrI	ACTGG	3 cut(s)	863, 917, 1000
BssECI	CCNNGG	2 cut(s)	338, 1006
BssMI	GATC	5 cut(s)	100, 123, 169, 219, 928
BssSI	CACGAG	1 cut(s)	379
BssT1I	CCWWGG	2 cut(s)	338, 1006
Bst2BI	CACGAG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	957
Bst4CI	ACNGT	1 cut(s)	797
BstAFI	CTTAAG	1 cut(s)	352
BstAPI	GCANNNNNTGC	2 cut(s)	77, 482
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	3 cut(s)	316, 362, 876
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	5 cut(s)	255, 858, 886, 947, 965
BstH2I	RGCGCY	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	5 cut(s)	103, 126, 172, 222, 931
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	5 cut(s)	100, 123, 169, 219, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 80, 482, 686, 881
BstNI	CCWGG	1 cut(s)	957
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	955
BstSFI	CTRYAG	2 cut(s)	486, 525
BstV1I	GCAGC	7 cut(s)	67, 83, 378, 451, 511, 539, 859
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	123, 169
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	2 cut(s)	123, 169
BsuI	GTATCC	1 cut(s)	924
BsuRI	GGCC	4 cut(s)	254, 417, 689, 900
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	5 cut(s)	255, 858, 886, 947, 965
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	563
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	2 cut(s)	687, 898
CviAII	CATG	5 cut(s)	77, 116, 226, 339, 708
CviJI	RGCY	5 cut(s)	74, 254, 417, 689, 900
CviKI_1	RGCY	5 cut(s)	74, 254, 417, 689, 900
DdeI	CTNAG	3 cut(s)	316, 362, 876
DpnI	GATC	5 cut(s)	102, 125, 171, 221, 930
DpnII	GATC	5 cut(s)	100, 123, 169, 219, 928
EaeI	YGGCCR	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	338, 1006
Eco47III	AGCGCT	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	955
EcoT14I	CCWWGG	2 cut(s)	338, 1006
ErhI	CCWWGG	2 cut(s)	338, 1006
FaeI	CATG	5 cut(s)	80, 119, 229, 342, 711
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	5 cut(s)	76, 115, 225, 338, 707
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	7 cut(s)	72, 81, 392, 440, 525, 528, 873
FokI	GGATG	5 cut(s)	242, 865, 893, 934, 972
Fsp4HI	GCNGC	7 cut(s)	72, 81, 392, 440, 525, 528, 873
FspBI	CTAG	2 cut(s)	90, 726
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	7 cut(s)	72, 81, 392, 440, 525, 528, 873
HaeII	RGCGCY	1 cut(s)	649
HaeIII	GGCC	4 cut(s)	254, 417, 689, 900
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	5 cut(s)	80, 119, 229, 342, 711
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HinfI	GANTC	8 cut(s)	29, 52, 140, 193, 268, 301, 386, 814
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	3 cut(s)	123, 373, 431
Hpy188III	TCNNGA	5 cut(s)	56, 104, 513, 818, 1016
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	1 cut(s)	980
HpyAV	CCTTC	4 cut(s)	244, 415, 650, 962
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4IV	ACGT	1 cut(s)	978
HpyCH4V	TGCA	6 cut(s)	439, 464, 476, 527, 632, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 80, 482, 686, 881
HpyF3I	CTNAG	3 cut(s)	316, 362, 876
HpySE526I	ACGT	1 cut(s)	978
Hsp92II	CATG	5 cut(s)	80, 119, 229, 342, 711
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	5 cut(s)	100, 123, 169, 219, 928
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	7 cut(s)	67, 83, 378, 451, 511, 539, 859
LweI	GCATC	2 cut(s)	472, 871
MaeI	CTAG	2 cut(s)	90, 726
MaeII	ACGT	1 cut(s)	978
MaeIII	GTNAC	3 cut(s)	92, 759, 943
MalI	GATC	5 cut(s)	102, 125, 171, 221, 930
MboI	GATC	5 cut(s)	100, 123, 169, 219, 928
MboII	GAAGA	2 cut(s)	16, 279
MfeI	CAATTG	2 cut(s)	135, 295
MflI	RGATCY	2 cut(s)	123, 169
MhlI	GDGCHC	2 cut(s)	378, 777
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	9 cut(s)	63, 135, 295, 328, 344, 452, 866, 924, 1021
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	3 cut(s)	24, 243, 454
MnlI	CCTC	4 cut(s)	708, 784, 871, 977
Mox20I	TGGCCA	1 cut(s)	417
MroXI	GAANNNNTTC	3 cut(s)	51, 425, 721
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	2 cut(s)	153, 353
Msp20I	TGGCCA	1 cut(s)	417
MspCI	CTTAAG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	957
MunI	CAATTG	2 cut(s)	135, 295
Mva1269I	GAATGC	1 cut(s)	1011
MvaI	CCWGG	1 cut(s)	957
MwoI	GCNNNNNNNGC	5 cut(s)	77, 80, 482, 686, 881
NcoI	CCATGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	5 cut(s)	100, 123, 169, 219, 928
NlaIII	CATG	5 cut(s)	80, 119, 229, 342, 711
NlaIV	GGNNCC	3 cut(s)	171, 688, 784
NmuCI	GTSAC	3 cut(s)	92, 759, 943
NspI	RCATGY	1 cut(s)	119
PctI	GAATGC	1 cut(s)	1011
PdmI	GAANNNNTTC	3 cut(s)	51, 425, 721
PfeI	GAWTC	7 cut(s)	29, 52, 140, 193, 268, 301, 386
PfoI	TCCNGGA	1 cut(s)	955
PkrI	GCNGC	7 cut(s)	73, 82, 393, 441, 526, 529, 874
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	955
PspGI	CCWGG	1 cut(s)	955
PspN4I	GGNNCC	3 cut(s)	171, 688, 784
PspPI	GGNCC	2 cut(s)	687, 898
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	2 cut(s)	123, 169
SaqAI	TTAA	2 cut(s)	153, 353
SatI	GCNGC	7 cut(s)	72, 81, 392, 440, 525, 528, 873
Sau3AI	GATC	5 cut(s)	100, 123, 169, 219, 928
Sau96I	GGNCC	2 cut(s)	687, 898
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	1 cut(s)	957
SduI	GDGCHC	2 cut(s)	378, 777
SetI	ASST	8 cut(s)	23, 160, 322, 426, 438, 595, 700, 981
SfaNI	GCATC	2 cut(s)	472, 871
SfcI	CTRYAG	2 cut(s)	486, 525
SmlI	CTYRAG	2 cut(s)	38, 352
SmoI	CTYRAG	2 cut(s)	38, 352
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	9 cut(s)	63, 135, 295, 328, 344, 452, 866, 924, 1021
SsiI	CCGC	1 cut(s)	204
SspI	AATATT	1 cut(s)	275
SspMI	CTAG	2 cut(s)	90, 726
StyD4I	CCNGG	1 cut(s)	955
StyI	CCWWGG	2 cut(s)	338, 1006
TaaI	ACNGT	1 cut(s)	797
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	4 cut(s)	222, 587, 603, 931
TasI	AATT	9 cut(s)	63, 135, 295, 328, 344, 452, 866, 924, 1021
TfiI	GAWTC	7 cut(s)	29, 52, 140, 193, 268, 301, 386
Tru1I	TTAA	2 cut(s)	153, 353
Tru9I	TTAA	2 cut(s)	153, 353
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	3 cut(s)	92, 759, 943
TseI	GCWGC	7 cut(s)	71, 80, 391, 439, 524, 527, 872
Tsp45I	GTSAC	3 cut(s)	92, 759, 943
TspDTI	ATGAA	3 cut(s)	17, 279, 869
TspRI	CASTG	1 cut(s)	676
Vha464I	CTTAAG	1 cut(s)	352
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	119
XmnI	GAANNNNTTC	3 cut(s)	51, 425, 721
XspI	CTAG	2 cut(s)	90, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.