Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008961

Physical Location & Seq

Genomic Coordinates Reverse (-)

23922385 .. 23929843

Gene Structure 7459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3414 bp

ATGGATAACAATAGTTCTCCACCACCATACAATGGTTCACCACCATACTATCCACCATACCAGAATGCTTACCCACCATACCCACATCACCCTCCTTCTCAATACCCACCTCCTCCTTCAGATCAATACCCTCCTCCACCAGATCAATACCCTCCTGCTCCTGCTCCAGCTCCATATCCATACCCTTATACTTCATACCCTCCTTACCAACATGCCCCTTATCCATACCCTTCTTCAGCTTCAACTCCTTCATCTGCATACCCTCCCTCAGCTCCACCTCCTTCCTCTGCATACCCTCCTTCAGCTCCACCTCCTTCATCTGCGTACCCTCCATCACCTTCACATTCTTCAACTACATACCCTCCATCACCTACATCATATCCACAATCACCATCCTCAGCCTCTTCCCATTCGGGCCCTTTCGACTACAATCAGCCCCCTTATCCCTATCCATACCCTCCGGCCAGGCCAAGTACAAATAGTGGTCCTCTGCCAACCCTTCAACACCAGGGGAGTGGTAGTTTTAAGTATGATTCTACCCATTATCAGTACCAGCAGTCAGGGATGTACCCGCCAGTAGAAAGCCCCCACCAGTCCCCTCTGCGTGCCAGTAGGTTCTCTCTTCACCAGAGGTATGATAGTTGTCCTGTAGGAGTTGAGGCTTCTGGTTACCCCCCAGTGGATCAGCTTTTGAGTAATATGCACTTGTCTGAGAACCAACCAGCTGATAATTCAGTGGCACCGTCAGCACCTTCGAGTGCAAGGTGTGATAAGGTGGGTGAGTTTTATGGGTATCCTAATAGCTCCTTTTCGACTTGGGAGGCGAGTAGTACTTATTCAGGGAATCAGACTGAACCGCCAAGTCCTGTTTTGACCCCAACAACTTCAATCAATGGGTCTCAACATAGCCAGAGTTTGCAGATTGTTCCATTGCAGAATAAAGGGTCCTTGAAGGTTTTGCTCTTACATGGGAATCTGGATATTTGGGTTTATGAAGCGAAAAACCTGCCGAATATGGACATGTTCCACAAGACTTTGGGGGATATGTTTATGAAGTTTCCAGGGACTGGAAGCAACAAAGCTGATGGGCAGTCGAACCGTGGGATTACTAGTGATCCATATGTTTCAATTTCAGTTGCAAATGCTGTAATTGGGAGGACATATGTGATAAGCAATTCTGAATTTCCTGTTTGGAGGCAACATTTTAATGTTCCAGTAGCGCATTATGCAGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATCTTGTGGGATCCCAGCTTATTGGAGTCGTGGCAATTCCAGTAGAACATATATACTTGGGAGCAAGAGTTGAGGGAATTTACCCAATCCTGAATGCTAGTGGGAAGCCTTGTAAACCTGGAGCTGTCCTAAGGCTTTCAATTCAGTACACTCCAATTGAGAGATTGAGCATTTACCATAATGGAGTTGGGGCAGGCCCTGATTACTATGGGGTTCCTGGCACCTATTTTCCTCTTAGGACAGGTGGAAAGGTAACTCTTTACCAAGATGCTCACGTCCCAGACGGTTGTCTTCCGAACTTGATTTTAGGTGGGGGGAGGCCATATGTGCATGGGAAGTGTTGGCATGACATTTTTGATGCAATACGGCAAGCAAAGCGTTTGATTTACATTGCTGGGTGGTCGGTTTGGCACAATGTTAAACTGGTTCGGGATGGTGGTGCAGCATCAAATGTCACCATAGGTGATCTTCTGAGATCCAAGTCCCAGGAAGGAGTGAGAGTACTGCTGCTTGTGTGGGATGACCCCACTTCAAGGAGCATTTTGGGTTATAAAACTGATGGAATCATGCAAACCCATGATGAGGAAATTAGGCGGTTTTTTAAGCACTCTTCGGTGCAAGTGTTGCTTTGCCCCCGCACTGCTGGAAAACGACATAGCTGGGTTAAGCAAAGGGAAGTTGGGACGATCTATACGCATCATCAGAAAACCGTAATTGTGGATGCTGATGCTGGCTATAGTAGGAGGAAAATCCTAGCTTTTGTCGGAGGACTTGACTTATGTGATGGTCGATATGATACTCCAAACCATGAGCTATTTAAGACGTTGAAAACAGTGCATAAAGATGACTATCACAACCCAACGTTCACGGGTAGCACCGCTGGTTGTCCAAGAGAGCCATGGCATGATTTGCACTCTAGGCTTGATGGTCCAGCAGCATATGATGTTCTGACCAACTTTGAGGAGCGCTGGTTAAAGGCTTCAAAACCACAAGGGATGAAGAAACTGAAAAGAACCTACAATGATTCTTTGCTCAAGTTGGAAAGGATCCCAGACATAATTGGAGCAGCCCATGCTGCTTCCACTAGTGACAACGATCCTGAAACTTGGCATGTTCAGATCTTTCGTTCAATTGATTCAAACTCTGTTAAAGGTTTCCCAAAGGATCCAAAAGAAGCAACAAGCAAGAATCTGGTATGCGGAAAGAATGTGCTGATCGACATGAGCATACATACAGCATATGTGAAGGCCATCCGTGCTGCCCAGCATTTCATATATGTAGAGAATCAATATTTTATTGGATCTTCATACAATTGGAATCAATACAAAGACTTAGGTGCTAATAATTTGATTCCCATGGAAATTGCCCTTAAGATTGCTGAGAAAATCAGAGCACACGAGAGATTCGCTGCGTATATTGTTATTCCAATGTGGCCAGAAGGTGTTCCGACTGGTGCAGCAACACAAAGAATTCTATTTTGGCAGCACAAGACAATGCAAATGATGTACGAGACAATTTACAAGGCGTTAGTGGAAATGGGGTTGGAGGGTGCATTCTGCCCCCAAGACTATTTAAACTTCTTTTGTCTTGGAAATCGTGAGGCTATAGGTGGAAATGATACATCTGTTTCTGGAAGTCCTGCTGCAGCAAACACTCCACAGGCATTTAGTCAAAAAAGCAGGCGATTTATGATTTATGTTCACTCGAAAGGTATGATAGTCGATGACGAGTATGTAATAGTGGGGTCTGCAAACATAAATCAGCGCTCTATGGAAGGGACAAGAGACACTGAAATAGCAATGGGGGCCTACCAACCTCATCATACATGGGCAAGAAATCATTCTAGTCCTTTCGGAGAGATATATGGATATAGAATGTCACTATGGGCAGAGCACACAGGAACCATTGAGGACTGTTTTAGAGAACCAGAAAGTCTTGAATGTGTTAGGAGAGTTAGAGCAATGGGTGAGATGAACTGGAAACAATTTGCTGCTGAGCATGCAACAGAGATGACGGGTCATCTGTTGAAGTATCCAGTTGAAATTGATCGAAAAGGCAAAGTGACATCTCTTCCTGGATGTGAGAGTTTCCCCGACGTAGGAGGAAATATAACTGGTTCTTTCCTTGGCATTCAAGAAAATTTGACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008081 GO:0008150 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0010035 GO:0010038 GO:0016298 GO:0016787 GO:0016788 GO:0030054 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0045087 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

1137

Amino Acids

126.07

Weight (kDa)

7.04

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	324 - 449	2.1e-13	C2 domain
PLDc	PF00614	651 - 684	1e-05	Phospholipase D Active site motif
PLDc_2	PF13091	984 - 1021	3e-06	PLD-like domain
PLDc	PF00614	985 - 1010	3.8e-08	Phospholipase D Active site motif
PLD_C	PF12357	1057 - 1127	6.7e-31	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42010 AT2G42010 AT4G00240 AT4G00240 AT4G00240
fragaria_vesca	FvH4_7g12760
malus_domestica	MD07G1124600.v1.1
prunus_persica	Prupe.2G152100_v2.0.a1 Prupe.2G152100_v2.0.a1
pyrus_communis	pycom07g11820
rosa_chinensis	RchiOBHm_Chr1g0313111 RchiOBHm_Chr1g0351791
rosa_laevigata	RLG00000028383
rosa_multiflora	Rmu_sc0001933.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303540
rosa_rugosa	Rorug01G0221600
rosa_samantha	Rh1AG000800 Rh1AG235500 Rh1BG205900 Rh1CG005200 Rh1DG233000
rosa_wichuraiana	Rw1G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1812
Acc36I	ACCTGC	1 cut(s)	1014
AccB1I	GGYRCC	2 cut(s)	739, 1481
AccB7I	CCANNNNNTGG	2 cut(s)	32, 1067
AciI	CCGC	6 cut(s)	572, 857, 1855, 1897, 2139, 2460
AclI	AACGTT	1 cut(s)	2123
AcoI	YGGCCR	2 cut(s)	462, 2693
AcsI	RAATTY	4 cut(s)	1181, 1338, 2730, 3400
AcuI	CTGAAG	4 cut(s)	102, 219, 285, 1254
AfaI	GTAC	8 cut(s)	326, 475, 551, 569, 832, 1409, 1764, 2768
AfeI	AGCGCT	2 cut(s)	2228, 3026
AfiI	CCNNNNNNNGG	6 cut(s)	32, 679, 1067, 1794, 1843, 3359
AflII	CTTAAG	1 cut(s)	2630
AflIII	ACRYGT	1 cut(s)	1020
AhlI	ACTAGT	2 cut(s)	1109, 2345
AjiI	CACGTC	1 cut(s)	1537
AjnI	CCWGG	7 cut(s)	464, 507, 1060, 1378, 1477, 1746, 3334
AjuI	GAANNNNNNNTTGG	2 cut(s)	2722, 2754
Alw21I	GWGCWC	3 cut(s)	1242, 2656, 3156
Alw26I	GTCTC	3 cut(s)	903, 2765, 3039
Alw44I	GTGCAC	1 cut(s)	1238
AlwNI	CAGNNNCTG	2 cut(s)	1067, 1460
Aor51HI	AGCGCT	2 cut(s)	2228, 3026
AoxI	GGCC	8 cut(s)	415, 462, 467, 1456, 1580, 2508, 2693, 3066
ApaI	GGGCCC	1 cut(s)	419
ApaLI	GTGCAC	1 cut(s)	1238
ApoI	RAATTY	4 cut(s)	1181, 1338, 2730, 3400
Asp700I	GAANNNNTTC	2 cut(s)	2703, 3100
AspLEI	GCGC	3 cut(s)	1222, 2229, 3027
AspS9I	GGNCC	7 cut(s)	415, 416, 485, 945, 1457, 2189, 3066
AvaII	GGWCC	3 cut(s)	485, 945, 2189
AxyI	CCTNAGG	1 cut(s)	1391
BaeGI	GKGCMC	2 cut(s)	419, 1242
BaeI	ACNNNNGTAYC	2 cut(s)	2871, 2904
BalI	TGGCCA	1 cut(s)	2695
BamHI	GGATCC	3 cut(s)	1271, 2307, 2425
BanI	GGYRCC	2 cut(s)	739, 1481
BanII	GRGCYC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	2657
BbsI	GAAGAC	1 cut(s)	1544
Bbv12I	GWGCWC	3 cut(s)	1242, 2656, 3156
BbvCI	CCTCAGC	2 cut(s)	268, 397
BccI	CCATC	9 cut(s)	340, 373, 400, 1079, 1688, 1814, 2039, 2180, 2519
BceAI	ACGGC	1 cut(s)	1643
BcgI	CGANNNNNNTGC	2 cut(s)	988, 1022
BciT130I	CCWGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
BciVI	GTATCC	2 cut(s)	804, 3303
BcoDI	GTCTC	3 cut(s)	903, 2765, 3039
BcuI	ACTAGT	2 cut(s)	1109, 2345
BfaI	CTAG	6 cut(s)	1110, 1359, 2015, 2178, 2346, 3105
BfmI	CTRYAG	4 cut(s)	648, 1996, 2865, 2904
BfoI	RGCGCY	2 cut(s)	2230, 3028
BfrI	CTTAAG	1 cut(s)	2630
BfuAI	ACCTGC	1 cut(s)	1014
BfuI	GTATCC	2 cut(s)	804, 3303
BglII	AGATCT	1 cut(s)	2379
BlpI	GCTNAGC	1 cut(s)	3255
BmcAI	AGTACT	2 cut(s)	832, 1764
Bme1390I	CCNGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
Bme18I	GGWCC	3 cut(s)	485, 945, 2189
BmgBI	CACGTC	1 cut(s)	1537
BmgT120I	GGNCC	7 cut(s)	415, 416, 485, 945, 1457, 2189, 3066
BmrFI	CCNGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	6 cut(s)	1519, 1609, 1715, 1966, 1972, 1978
BmuI	ACTGGG	1 cut(s)	671
BoxI	GACNNNNGTC	1 cut(s)	1548
BpiI	GAAGAC	1 cut(s)	1544
BpmI	CTGGAG	2 cut(s)	150, 1401
Bpu10I	CCTNAGC	2 cut(s)	268, 397
Bpu1102I	GCTNAGC	1 cut(s)	3255
BpuEI	CTTGAG	1 cut(s)	2279
BsaBI	GATNNNNATC	1 cut(s)	2109
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	7 cut(s)	508, 1061, 1099, 1746, 2159, 2616, 3385
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 679, 1067, 1794, 1843, 3359
Bse21I	CCTNAGG	1 cut(s)	1391
Bse3DI	GCAATG	4 cut(s)	929, 1650, 3066, 3228
Bse8I	GATNNNNATC	1 cut(s)	2109
BseBI	CCWGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
BseDI	CCNNGG	7 cut(s)	508, 1061, 1099, 1746, 2159, 2616, 3385
BseGI	GGATG	8 cut(s)	392, 570, 1699, 1786, 1987, 2262, 2511, 3344
BseJI	GATNNNNATC	1 cut(s)	2109
BseLI	CCNNNNNNNGG	6 cut(s)	32, 679, 1067, 1794, 1843, 3359
BseMI	GCAATG	4 cut(s)	929, 1650, 3066, 3228
BseMII	CTCAG	6 cut(s)	282, 411, 702, 1724, 2631, 3246
BseRI	GAGGAG	3 cut(s)	102, 123, 2237
BseSI	GKGCMC	2 cut(s)	419, 1242
BseYI	CCCAGC	4 cut(s)	1275, 1655, 1920, 2523
BsgI	GTGCAG	2 cut(s)	1722, 2736
BshFI	GGCC	8 cut(s)	417, 464, 469, 1458, 1582, 2510, 2695, 3068
BshNI	GGYRCC	2 cut(s)	739, 1481
BsiHKAI	GWGCWC	3 cut(s)	1242, 2656, 3156
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	6 cut(s)	580, 1078, 1523, 1729, 1957, 3052
BslI	CCNNNNNNNGG	6 cut(s)	32, 679, 1067, 1794, 1843, 3359
BsmAI	GTCTC	3 cut(s)	903, 2765, 3039
BsmFI	GGGAC	6 cut(s)	580, 1078, 1523, 1729, 1957, 3052
BsmI	GAATGC	4 cut(s)	70, 1360, 2813, 3390
BsnI	GGCC	8 cut(s)	417, 464, 469, 1458, 1582, 2510, 2695, 3068
Bso31I	GGTCTC	1 cut(s)	903
Bsp120I	GGGCCC	1 cut(s)	415
Bsp1286I	GDGCHC	4 cut(s)	419, 1242, 2656, 3156
Bsp1720I	GCTNAGC	1 cut(s)	3255
Bsp19I	CCATGG	2 cut(s)	2159, 2616
BspACI	CCGC	6 cut(s)	572, 857, 1855, 1897, 2139, 2460
BspANI	GGCC	8 cut(s)	417, 464, 469, 1458, 1582, 2510, 2695, 3068
BspCNI	CTCAG	6 cut(s)	281, 410, 703, 1725, 2632, 3247
BspMAI	CTGCAG	1 cut(s)	2908
BspMI	ACCTGC	1 cut(s)	1014
BspT107I	GGYRCC	2 cut(s)	739, 1481
BspTI	CTTAAG	1 cut(s)	2630
BspTNI	GGTCTC	1 cut(s)	903
BsrDI	GCAATG	4 cut(s)	929, 1650, 3066, 3228
BssECI	CCNNGG	7 cut(s)	508, 1061, 1099, 1746, 2159, 2616, 3385
BssSI	CACGAG	1 cut(s)	2657
BssT1I	CCWWGG	3 cut(s)	2159, 2616, 3385
Bst2BI	CACGAG	1 cut(s)	2657
Bst2UI	CCWGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
Bst4CI	ACNGT	7 cut(s)	744, 1100, 1259, 1547, 1972, 2095, 3176
Bst6I	CTCTTC	4 cut(s)	409, 627, 1876, 3336
BstAFI	CTTAAG	1 cut(s)	2630
BstAPI	GCANNNNNTGC	3 cut(s)	1885, 2170, 2333
BstC8I	GCNNGC	6 cut(s)	606, 1456, 1632, 1993, 2942, 3261
BstDEI	CTNAG	9 cut(s)	268, 397, 711, 1391, 1496, 1733, 2593, 2640, 3255
BstDSI	CCRYGG	3 cut(s)	1099, 2159, 2616
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	8 cut(s)	392, 570, 1699, 1786, 1987, 2262, 2511, 3344
BstH2I	RGCGCY	2 cut(s)	2230, 3028
BstHHI	GCGC	3 cut(s)	1222, 2229, 3027
BstMAI	GTCTC	3 cut(s)	903, 2765, 3039
BstNI	CCWGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
BstNSI	RCATGY	4 cut(s)	215, 1024, 2375, 3263
BstPAI	GACNNNNGTC	1 cut(s)	1548
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	7 cut(s)	464, 507, 1060, 1378, 1477, 1746, 3334
BstSFI	CTRYAG	4 cut(s)	648, 1996, 2865, 2904
BstSLI	GKGCMC	2 cut(s)	419, 1242
BstV2I	GAAGAC	1 cut(s)	1544
BstX2I	RGATCY	6 cut(s)	1271, 1736, 2307, 2379, 2425, 2561
BstXI	CCANNNNNNTGG	2 cut(s)	515, 1283
BstYI	RGATCY	6 cut(s)	1271, 1736, 2307, 2379, 2425, 2561
Bsu36I	CCTNAGG	1 cut(s)	1391
BsuI	GTATCC	2 cut(s)	804, 3303
BsuRI	GGCC	8 cut(s)	417, 464, 469, 1458, 1582, 2510, 2695, 3068
BtgI	CCRYGG	3 cut(s)	1099, 2159, 2616
BtrI	CACGTC	1 cut(s)	1537
BtsCI	GGATG	8 cut(s)	392, 570, 1699, 1786, 1987, 2262, 2511, 3344
BtsI	GCAGTG	1 cut(s)	1899
BtsIMutI	CAGTG	6 cut(s)	684, 741, 1264, 1899, 2100, 3048
BveI	ACCTGC	1 cut(s)	1014
Cac8I	GCNNGC	6 cut(s)	606, 1456, 1632, 1993, 2942, 3261
CaiI	CAGNNNCTG	2 cut(s)	1067, 1460
CfoI	GCGC	3 cut(s)	1222, 2229, 3027
Cfr13I	GGNCC	7 cut(s)	415, 416, 485, 945, 1457, 2189, 3066
Csp6I	GTAC	8 cut(s)	325, 474, 550, 568, 831, 1408, 1763, 2767
CviQI	GTAC	8 cut(s)	325, 474, 550, 568, 831, 1408, 1763, 2767
DdeI	CTNAG	9 cut(s)	268, 397, 711, 1391, 1496, 1733, 2593, 2640, 3255
DraI	TTTAAA	1 cut(s)	2835
EaeI	YGGCCR	2 cut(s)	462, 2693
Eam1104I	CTCTTC	4 cut(s)	409, 627, 1876, 3336
EarI	CTCTTC	4 cut(s)	409, 627, 1876, 3336
Eco130I	CCWWGG	3 cut(s)	2159, 2616, 3385
Eco24I	GRGCYC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	485, 945, 2189
Eco47III	AGCGCT	2 cut(s)	2228, 3026
Eco57I	CTGAAG	4 cut(s)	102, 219, 285, 1254
Eco81I	CCTNAGG	1 cut(s)	1391
Eco91I	GGTNACC	1 cut(s)	668
EcoO109I	RGGNCCY	4 cut(s)	416, 945, 1457, 3066
EcoO65I	GGTNACC	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	2730
EcoRII	CCWGG	7 cut(s)	464, 507, 1060, 1378, 1477, 1746, 3334
EcoT14I	CCWWGG	3 cut(s)	2159, 2616, 3385
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	3 cut(s)	2159, 2616, 3385
FalI	AAGNNNNNCTT	2 cut(s)	1872, 1904
FaqI	GGGAC	6 cut(s)	580, 1078, 1523, 1729, 1957, 3052
FauI	CCCGC	2 cut(s)	579, 1904
FauNDI	CATATG	5 cut(s)	1120, 1162, 1585, 2200, 2500
FokI	GGATG	8 cut(s)	379, 577, 1706, 1793, 1994, 2269, 2498, 3351
FriOI	GRGCYC	1 cut(s)	419
FspBI	CTAG	6 cut(s)	1110, 1359, 2015, 2178, 2346, 3105
GlaI	GCGC	3 cut(s)	1221, 2228, 3026
GsaI	CCCAGC	4 cut(s)	1279, 1659, 1924, 2527
GsuI	CTGGAG	2 cut(s)	150, 1401
HaeII	RGCGCY	2 cut(s)	2230, 3028
HaeIII	GGCC	8 cut(s)	417, 464, 469, 1458, 1582, 2510, 2695, 3068
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	3 cut(s)	1222, 2229, 3027
Hin6I	GCGC	3 cut(s)	1220, 2227, 3025
HinP1I	GCGC	3 cut(s)	1220, 2227, 3025
HpaII	CCGG	1 cut(s)	461
Hpy166II	GTNNAC	6 cut(s)	38, 1240, 1376, 1410, 2127, 2962
Hpy188III	TCNNGA	8 cut(s)	977, 1351, 1691, 2360, 2858, 2892, 3197, 3395
Hpy8I	GTNNAC	6 cut(s)	38, 1240, 1376, 1410, 2127, 2962
Hpy99I	CGWCG	1 cut(s)	3359
HpyCH4III	ACNGT	7 cut(s)	744, 1100, 1259, 1547, 1972, 2095, 3176
HpyCH4IV	ACGT	4 cut(s)	1536, 2084, 2123, 3357
HpyF3I	CTNAG	9 cut(s)	268, 397, 711, 1391, 1496, 1733, 2593, 2640, 3255
HpySE526I	ACGT	4 cut(s)	1536, 2084, 2123, 3357
HspAI	GCGC	3 cut(s)	1220, 2227, 3025
LweI	GCATC	6 cut(s)	1519, 1609, 1715, 1966, 1972, 1978
MaeI	CTAG	6 cut(s)	1110, 1359, 2015, 2178, 2346, 3105
MaeII	ACGT	4 cut(s)	1536, 2084, 2123, 3357
MaeIII	GTNAC	6 cut(s)	668, 1513, 1714, 2348, 3138, 3322
MfeI	CAATTG	3 cut(s)	1416, 2391, 2572
MflI	RGATCY	6 cut(s)	1271, 1736, 2307, 2379, 2425, 2561
MhlI	GDGCHC	4 cut(s)	419, 1242, 2656, 3156
MlsI	TGGCCA	1 cut(s)	2695
MluNI	TGGCCA	1 cut(s)	2695
MlyI	GAGTC	1 cut(s)	1296
MmeI	TCCRAC	4 cut(s)	2005, 2280, 2732, 2784
Mox20I	TGGCCA	1 cut(s)	2695
MroXI	GAANNNNTTC	2 cut(s)	2703, 3100
MscI	TGGCCA	1 cut(s)	2695
MslI	CAYNNNNRTG	2 cut(s)	1206, 2103
Msp20I	TGGCCA	1 cut(s)	2695
MspA1I	CMGCKG	3 cut(s)	725, 1232, 2141
MspCI	CTTAAG	1 cut(s)	2630
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
MunI	CAATTG	3 cut(s)	1416, 2391, 2572
Mva1269I	GAATGC	4 cut(s)	70, 1360, 2813, 3390
MvaI	CCWGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
NcoI	CCATGG	2 cut(s)	2159, 2616
NdeI	CATATG	5 cut(s)	1120, 1162, 1585, 2200, 2500
NmuCI	GTSAC	4 cut(s)	1714, 2348, 3138, 3322
NspI	RCATGY	4 cut(s)	215, 1024, 2375, 3263
PaeI	GCATGC	1 cut(s)	3263
PciI	ACATGT	1 cut(s)	1020
PctI	GAATGC	4 cut(s)	70, 1360, 2813, 3390
PdmI	GAANNNNTTC	2 cut(s)	2703, 3100
PflMI	CCANNNNNTGG	2 cut(s)	32, 1067
PfoI	TCCNGGA	1 cut(s)	3334
PleI	GAGTC	1 cut(s)	1295
PpsI	GAGTC	1 cut(s)	1295
PpuMI	RGGWCCY	1 cut(s)	945
PscI	ACATGT	1 cut(s)	1020
PshAI	GACNNNNGTC	1 cut(s)	1548
PsiI	TTATAA	1 cut(s)	1812
Psp1406I	AACGTT	1 cut(s)	2123
Psp5II	RGGWCCY	1 cut(s)	945
Psp6I	CCWGG	7 cut(s)	464, 507, 1060, 1378, 1477, 1746, 3334
PspEI	GGTNACC	1 cut(s)	668
PspFI	CCCAGC	4 cut(s)	1275, 1655, 1920, 2523
PspGI	CCWGG	7 cut(s)	464, 507, 1060, 1378, 1477, 1746, 3334
PspOMI	GGGCCC	1 cut(s)	415
PspPI	GGNCC	7 cut(s)	415, 416, 485, 945, 1457, 2189, 3066
PspPPI	RGGWCCY	1 cut(s)	945
PstI	CTGCAG	1 cut(s)	2908
PstNI	CAGNNNCTG	2 cut(s)	1067, 1460
PsuI	RGATCY	6 cut(s)	1271, 1736, 2307, 2379, 2425, 2561
PvuII	CAGCTG	2 cut(s)	725, 1232
RsaI	GTAC	8 cut(s)	326, 475, 551, 569, 832, 1409, 1764, 2768
RsaNI	GTAC	8 cut(s)	325, 474, 550, 568, 831, 1408, 1763, 2767
RseI	CAYNNNNRTG	2 cut(s)	1206, 2103
Sau96I	GGNCC	7 cut(s)	415, 416, 485, 945, 1457, 2189, 3066
ScaI	AGTACT	2 cut(s)	832, 1764
SchI	GAGTC	1 cut(s)	1296
ScrFI	CCNGG	7 cut(s)	466, 509, 1062, 1380, 1479, 1748, 3336
SduI	GDGCHC	4 cut(s)	419, 1242, 2656, 3156
SfaNI	GCATC	6 cut(s)	1519, 1609, 1715, 1966, 1972, 1978
SfcI	CTRYAG	4 cut(s)	648, 1996, 2865, 2904
SinI	GGWCC	3 cut(s)	485, 945, 2189
SmiMI	CAYNNNNRTG	2 cut(s)	1206, 2103
SmlI	CTYRAG	2 cut(s)	2294, 2630
SmoI	CTYRAG	2 cut(s)	2294, 2630
SpeI	ACTAGT	2 cut(s)	1109, 2345
SphI	GCATGC	1 cut(s)	3263
SsiI	CCGC	6 cut(s)	572, 857, 1855, 1897, 2139, 2460
SspI	AATATT	1 cut(s)	2552
SspMI	CTAG	6 cut(s)	1110, 1359, 2015, 2178, 2346, 3105
StyD4I	CCNGG	7 cut(s)	464, 507, 1060, 1378, 1477, 1746, 3334
StyI	CCWWGG	3 cut(s)	2159, 2616, 3385
TaaI	ACNGT	7 cut(s)	744, 1100, 1259, 1547, 1972, 2095, 3176
TaiI	ACGT	4 cut(s)	1539, 2087, 2126, 3360
TaqI	TCGA	9 cut(s)	423, 755, 812, 1094, 2050, 2478, 2966, 2982, 3310
TatI	WGTACW	4 cut(s)	473, 830, 1407, 1762
TscAI	CASTG	6 cut(s)	684, 741, 1264, 1906, 2100, 3055
TseFI	GTSAC	4 cut(s)	1714, 2348, 3138, 3322
Tsp45I	GTSAC	4 cut(s)	1714, 2348, 3138, 3322
TspDTI	ATGAA	9 cut(s)	183, 240, 306, 1008, 1067, 2273, 2521, 2556, 3248
TspGWI	ACGGA	1 cut(s)	2504
TspRI	CASTG	6 cut(s)	684, 741, 1264, 1906, 2100, 3055
Van91I	CCANNNNNTGG	2 cut(s)	32, 1067
Vha464I	CTTAAG	1 cut(s)	2630
VneI	GTGCAC	1 cut(s)	1238
VpaK11BI	GGWCC	3 cut(s)	485, 945, 2189
XapI	RAATTY	4 cut(s)	1181, 1338, 2730, 3400
XceI	RCATGY	4 cut(s)	215, 1024, 2375, 3263
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1445, 2157
XmnI	GAANNNNTTC	2 cut(s)	2703, 3100
XspI	CTAG	6 cut(s)	1110, 1359, 2015, 2178, 2346, 3105
ZrmI	AGTACT	2 cut(s)	832, 1764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.