Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Reverse (-)

17611185 .. 17613660

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGATTCAAATAATCATCTCTACGACCCGAATCCCACCGGGTCGGGTCTTCTTCGTTTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACGACGACAAGATTGGTTTCGACTCCGATAGGTTGCTTTCAAGATTCGTGACCTCTAATGGCGTTAACGGAGATCTGGGTTCACCTAAATTCGAGGATAAGTCTCCGGTTTCGTTAACGAACACCTCTGTTTCATACGCCGCCACTCTGCCGCCACCGCCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCATTACCCGAGGCAGAGTAAAGGGATAATGAACTCGGTTGGTTTGGATCAGTTTCTCGGTATCAATAATCATCACACCAAACCAGTTGAATCTAATCTTCTCCGTCAAAGCAGCTCTCCAGCCGGAATGTTTACTAATCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATTTGATGAATTACGAAGAAGATGAAGAGAGTCCATCTAATTCCAATGGATTAAGACGCCATTGCAGTCTCTCTTCAAGGCCACCTTCTTCACTTGGAATGCTTTCTCAAATACCTGAAATCGCACCCGAAACTAATTTTCCATATAGCCATTGGAATGATCCATCCAGCTTTATTGATAACTTATCCTCACTTAAAAGAGAAGCCGAGGACGATGGAAAATTGTTTCTCGGAGCTCAGAACGGAGAGTCCGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGCCTACCAAAGTCATCATCGACAGCCTCGGACATGGTTTCAGTGGATAAGTATCTTCAGCTACAAGATTCTGTTCCTTGTAAAATCAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAACGCGGATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGCAAACCAACACTTCGGATATGTTGGATTTAGCTGTGGATTACATCAAAGATTTACAAAGACAGTATAAGATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

359

Amino Acids

39.91

Weight (kDa)

7.68

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	291 - 336	2.2e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	898
AciI	CCGC	8 cut(s)	87, 237, 248, 254, 257, 290, 293, 898
AclWI	GGATC	2 cut(s)	348, 620
AcsI	RAATTY	2 cut(s)	185, 466
AcuI	CTGAAG	1 cut(s)	791
AcyI	GRCGYC	1 cut(s)	523
AgsI	TTSAA	5 cut(s)	9, 138, 383, 459, 543
AloI	GAACNNNNNNTCC	2 cut(s)	698, 730
Alw21I	GWGCWC	2 cut(s)	77, 703
Alw26I	GTCTC	2 cut(s)	204, 539
AlwI	GGATC	2 cut(s)	348, 620
AlwNI	CAGNNNCTG	1 cut(s)	736
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	259, 405
ApoI	RAATTY	2 cut(s)	185, 466
Asp700I	GAANNNNTTC	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	857
AsuC2I	CCSGG	2 cut(s)	40, 718
AsuHPI	GGTGA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	301
BanII	GRGCYC	2 cut(s)	77, 703
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	77, 703
BbvI	GCAGC	2 cut(s)	271, 417
BccI	CCATC	3 cut(s)	508, 637, 674
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	40, 718
BcoDI	GTCTC	2 cut(s)	204, 539
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	8 cut(s)	87, 237, 248, 257, 260, 290, 293, 406
BlsI	GCNGC	8 cut(s)	88, 238, 249, 258, 261, 291, 294, 407
Bme1390I	CCNGG	2 cut(s)	40, 718
BmeT110I	CYCGRG	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	40, 718
BmsI	GCATC	2 cut(s)	751, 882
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	40, 718
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	523
BsaJI	CCNNGG	3 cut(s)	302, 672, 777
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	1 cut(s)	1055
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	526
Bse8I	GATNNNNATC	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	302, 672, 777
BseGI	GGATG	2 cut(s)	629, 862
BseJI	GATNNNNATC	1 cut(s)	801
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	271, 417
Bsh1236I	CGCG	1 cut(s)	898
BshFI	GGCC	1 cut(s)	547
BsiHKAI	GWGCWC	2 cut(s)	77, 703
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	4 cut(s)	39, 203, 417, 717
BsmAI	GTCTC	2 cut(s)	204, 539
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	77, 703
Bsp143I	GATC	4 cut(s)	62, 169, 340, 625
BspACI	CCGC	8 cut(s)	87, 237, 248, 254, 257, 290, 293, 898
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	898
BspPI	GGATC	2 cut(s)	348, 620
BsrDI	GCAATG	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	3 cut(s)	302, 672, 777
BssMI	GATC	4 cut(s)	62, 169, 340, 625
BssNI	GRCGYC	1 cut(s)	523
Bst4CI	ACNGT	4 cut(s)	449, 738, 1014, 1046
Bst6I	CTCTTC	2 cut(s)	486, 544
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	908
BstDEI	CTNAG	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	629, 862
BstFNI	CGCG	1 cut(s)	898
BstHHI	GCGC	1 cut(s)	857
BstKTI	GATC	4 cut(s)	65, 172, 343, 628
BstMAI	GTCTC	2 cut(s)	204, 539
BstMBI	GATC	4 cut(s)	62, 169, 340, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 256, 265
BstSCI	CCNGG	2 cut(s)	38, 716
BstUI	CGCG	1 cut(s)	898
BstV1I	GCAGC	2 cut(s)	271, 417
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	547
BtgZI	GCGATG	1 cut(s)	859
BtsCI	GGATG	2 cut(s)	629, 862
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	908
CaiI	CAGNNNCTG	1 cut(s)	736
CfoI	GCGC	1 cut(s)	857
CseI	GACGC	1 cut(s)	531
CviAII	CATG	2 cut(s)	784, 943
DdeI	CTNAG	1 cut(s)	702
DpnI	GATC	4 cut(s)	64, 171, 342, 627
DpnII	GATC	4 cut(s)	62, 169, 340, 625
DraI	TTTAAA	1 cut(s)	1026
Eam1104I	CTCTTC	2 cut(s)	486, 544
EarI	CTCTTC	2 cut(s)	486, 544
Ecl136II	GAGCTC	2 cut(s)	75, 701
Eco24I	GRGCYC	2 cut(s)	77, 703
Eco53kI	GAGCTC	2 cut(s)	75, 701
Eco57I	CTGAAG	1 cut(s)	791
Eco88I	CYCGRG	1 cut(s)	301
EcoICRI	GAGCTC	2 cut(s)	75, 701
EcoT38I	GRGCYC	2 cut(s)	77, 703
FaeI	CATG	2 cut(s)	787, 946
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FatI	CATG	2 cut(s)	783, 942
Fnu4HI	GCNGC	8 cut(s)	87, 237, 248, 257, 260, 290, 293, 406
FokI	GGATG	2 cut(s)	616, 849
FriOI	GRGCYC	2 cut(s)	77, 703
Fsp4HI	GCNGC	8 cut(s)	87, 237, 248, 257, 260, 290, 293, 406
GlaI	GCGC	1 cut(s)	856
GluI	GCNGC	8 cut(s)	87, 237, 248, 257, 260, 290, 293, 406
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	4 cut(s)	39, 203, 417, 717
HgaI	GACGC	1 cut(s)	531
HhaI	GCGC	1 cut(s)	857
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	787, 946
Hin6I	GCGC	1 cut(s)	855
HinP1I	GCGC	1 cut(s)	855
HincII	GTYRAC	3 cut(s)	97, 163, 213
HindII	GTYRAC	3 cut(s)	97, 163, 213
HinfI	GANTC	9 cut(s)	5, 31, 119, 141, 383, 496, 713, 721, 818
HpaI	GTTAAC	2 cut(s)	163, 213
HpaII	CCGG	4 cut(s)	39, 203, 417, 717
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	5 cut(s)	97, 163, 179, 213, 426
Hpy188I	TCNGA	8 cut(s)	72, 124, 439, 698, 705, 781, 839, 967
Hpy188III	TCNNGA	2 cut(s)	138, 145
Hpy8I	GTNNAC	5 cut(s)	97, 163, 179, 213, 426
Hpy99I	CGWCG	2 cut(s)	104, 274
HpyAV	CCTTC	1 cut(s)	561
HpyCH4III	ACNGT	4 cut(s)	449, 738, 1014, 1046
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	2 cut(s)	531, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 256, 265
HpyF3I	CTNAG	1 cut(s)	702
HpySE526I	ACGT	1 cut(s)	847
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	2 cut(s)	787, 946
HspAI	GCGC	1 cut(s)	855
KspAI	GTTAAC	2 cut(s)	163, 213
Kzo9I	GATC	4 cut(s)	62, 169, 340, 625
LmnI	GCTCC	2 cut(s)	73, 698
Lsp1109I	GCAGC	2 cut(s)	271, 417
LweI	GCATC	2 cut(s)	751, 882
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	3 cut(s)	145, 732, 921
MalI	GATC	4 cut(s)	64, 171, 342, 627
MboI	GATC	4 cut(s)	62, 169, 340, 625
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	77, 703
MluCI	AATT	6 cut(s)	185, 466, 475, 505, 601, 686
MlyI	GAGTC	3 cut(s)	113, 505, 722
MmeI	TCCRAC	1 cut(s)	954
MroXI	GAANNNNTTC	1 cut(s)	568
MseI	TTAA	5 cut(s)	162, 212, 518, 660, 1025
MslI	CAYNNNNRTG	1 cut(s)	621
MspI	CCGG	4 cut(s)	39, 203, 417, 717
MspR9I	CCNGG	2 cut(s)	40, 718
Mva1269I	GAATGC	1 cut(s)	570
MvnI	CGCG	1 cut(s)	898
MwoI	GCNNNNNNNGC	3 cut(s)	253, 256, 265
NciI	CCSGG	2 cut(s)	40, 718
NdeII	GATC	4 cut(s)	62, 169, 340, 625
NlaIII	CATG	2 cut(s)	787, 946
NmeAIII	GCCGAG	1 cut(s)	697
NmuCI	GTSAC	1 cut(s)	145
PctI	GAATGC	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	568
PfeI	GAWTC	6 cut(s)	5, 31, 141, 383, 721, 818
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	8 cut(s)	88, 238, 249, 258, 261, 291, 294, 407
PleI	GAGTC	3 cut(s)	113, 504, 721
PpsI	GAGTC	3 cut(s)	113, 504, 721
Psp124BI	GAGCTC	2 cut(s)	77, 703
PstNI	CAGNNNCTG	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	2 cut(s)	77, 703
SaqAI	TTAA	5 cut(s)	162, 212, 518, 660, 1025
SatI	GCNGC	8 cut(s)	87, 237, 248, 257, 260, 290, 293, 406
Sau3AI	GATC	4 cut(s)	62, 169, 340, 625
SchI	GAGTC	3 cut(s)	113, 505, 722
ScrFI	CCNGG	2 cut(s)	40, 718
SduI	GDGCHC	2 cut(s)	77, 703
SfaNI	GCATC	2 cut(s)	751, 882
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	6 cut(s)	185, 466, 475, 505, 601, 686
SsiI	CCGC	8 cut(s)	87, 237, 248, 254, 257, 290, 293, 898
SstI	GAGCTC	2 cut(s)	77, 703
StyD4I	CCNGG	2 cut(s)	38, 716
TaaI	ACNGT	4 cut(s)	449, 738, 1014, 1046
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	5 cut(s)	117, 189, 272, 770, 868
TasI	AATT	6 cut(s)	185, 466, 475, 505, 601, 686
TauI	GCSGC	6 cut(s)	89, 239, 250, 259, 292, 295
TfiI	GAWTC	6 cut(s)	5, 31, 141, 383, 721, 818
Tru1I	TTAA	5 cut(s)	162, 212, 518, 660, 1025
Tru9I	TTAA	5 cut(s)	162, 212, 518, 660, 1025
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	259, 405
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	5 cut(s)	219, 338, 488, 504, 1070
TspGWI	ACGGA	3 cut(s)	180, 386, 723
TspRI	CASTG	1 cut(s)	798
XapI	RAATTY	2 cut(s)	185, 466
XcmI	CCANNNNNNNNNTGG	2 cut(s)	449, 615
XmnI	GAANNNNTTC	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.