Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Reverse (-)

25494700 .. 25497832

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTATAATAGTGCCCCGCCTATCAAATCGTGGCAAACAGAGTTGCCGTTAATGGATTCAAATACCCATCTCAATCTGGAGCACCAACAACCCCACCACCAACCCAATTCTGGGTTGCTCCGATTTCGCTCTGCTCCGAGCTCAATGTTCGCTGAGAACAACAACAACAACGCCGATTTGGGGGTCCATAAGGGAACTTTAATCGAGGGTGGTTCCGACTCCGACAGATTGTTCTCGAGATTCGTGAGCTACAGTCACAGTAACGACTCGGAATCGTGGCCGTCGAGTTTCCAGGAGTTCGAGGACAAATCTACGGTGACGGAGGCGGCTGTGACGGCGAGTCGTATGAGCTCACAGCATCAGCAGCAGGGGTTTCCTGGTCTTCCACCTCATTATCCGAGACAGAACTCGTTTGGGAGTGGTAATGGCTCTTATGGGTTGGTGGGTTCGGCTGCAGTGGAACATCACCCGCAAGCCAAGACTGTTACTTCCAATCTTGTTCGGCAGAGTAGTTCTCCTGCTGGGCTTTTCTCCAACAACACCTCTGTTCAAAATGGATTCCCATTTGGAGCTTGGAATGATCCATCAAATTTTGCCGATAATTTAGGTGGCATAAGAAGAGACCAAGATAATGATCAGAAGTTATTCTCTGCTACTCAGAATGGTGATCTTGGGAACCGGATTCATATATTATCCCACCACTTGAGTTTACCAAAAAATTCAGCAGAAGTTGCCATGGAAAAGTTCCTCCAACTCCAAGATTCTGTACCTTGCAAAGTTAGAGCAAAGCGAGGTTGTGCCACTCATCCTCGAAGCATTGCAGAAAGGGTGAGAAGAACACGGATTAGTGAACGAATGAGGAAGCTACAAGAGCTTGTGCCGAACATGGACAAGGTAAAGTTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

302

Amino Acids

33.51

Weight (kDa)

8.89

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	17, 326, 470
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	589, 718
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	3 cut(s)	110, 111, 180
AgsI	TTSAA	2 cut(s)	60, 551
AhdI	GACNNNNNGTC	1 cut(s)	339
AjnI	CCWGG	2 cut(s)	291, 376
AluBI	AGCT	6 cut(s)	141, 249, 351, 572, 865, 874
AluI	AGCT	6 cut(s)	141, 249, 351, 572, 865, 874
Alw21I	GWGCWC	3 cut(s)	84, 143, 353
Alw26I	GTCTC	2 cut(s)	394, 615
AlwI	GGATC	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	364, 452
ApoI	RAATTY	2 cut(s)	589, 718
Asp700I	GAANNNNTTC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	4 cut(s)	328, 458, 677, 841
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	143, 353
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	3 cut(s)	84, 143, 353
BbvI	GCAGC	2 cut(s)	376, 439
BccI	CCATC	2 cut(s)	75, 592
BceAI	ACGGC	3 cut(s)	31, 265, 351
BciT130I	CCWGG	2 cut(s)	293, 378
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	394, 615
BfmI	CTRYAG	2 cut(s)	250, 453
BisI	GCNGC	3 cut(s)	327, 365, 453
BlsI	GCNGC	3 cut(s)	328, 366, 454
Bme1390I	CCNGG	2 cut(s)	293, 378
Bme18I	GGWCC	1 cut(s)	184
BmeRI	GACNNNNNGTC	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	185, 214, 677
BmrFI	CCNGG	2 cut(s)	293, 378
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	735
BsaWI	WCCGGW	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 111, 180
Bse3DI	GCAATG	1 cut(s)	816
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	293, 378
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	1 cut(s)	805
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	3 cut(s)	110, 111, 180
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	144, 671
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	376, 439
BseYI	CCCAGC	1 cut(s)	521
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	3 cut(s)	84, 143, 353
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	3 cut(s)	110, 111, 180
BsmAI	GTCTC	2 cut(s)	394, 615
BsnI	GGCC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	4 cut(s)	16, 84, 143, 353
Bsp143I	GATC	3 cut(s)	580, 634, 667
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	3 cut(s)	17, 326, 470
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	145, 670
BspLI	GGNNCC	3 cut(s)	185, 214, 677
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	816
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	3 cut(s)	580, 634, 667
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	293, 378
Bst4CI	ACNGT	4 cut(s)	254, 260, 316, 484
Bst6I	CTCTTC	1 cut(s)	613
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	153, 657
BstDSI	CCRYGG	1 cut(s)	735
BstF5I	GGATG	1 cut(s)	805
BstKTI	GATC	3 cut(s)	583, 637, 670
BstMAI	GTCTC	2 cut(s)	394, 615
BstMBI	GATC	3 cut(s)	580, 634, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 364, 731, 871
BstNI	CCWGG	2 cut(s)	293, 378
BstSCI	CCNGG	2 cut(s)	291, 376
BstSFI	CTRYAG	2 cut(s)	250, 453
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	376, 439
BstV2I	GAAGAC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	735
BtsCI	GGATG	1 cut(s)	805
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	767
CviAII	CATG	2 cut(s)	736, 886
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	153, 657
DpnI	GATC	3 cut(s)	582, 636, 669
DpnII	GATC	3 cut(s)	580, 634, 667
DriI	GACNNNNNGTC	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	613
Eam1105I	GACNNNNNGTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	613
Ecl136II	GAGCTC	2 cut(s)	141, 351
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	2 cut(s)	143, 353
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	2 cut(s)	141, 351
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	2 cut(s)	141, 351
EcoRII	CCWGG	2 cut(s)	291, 376
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	2 cut(s)	143, 353
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	2 cut(s)	739, 889
FatI	CATG	2 cut(s)	735, 885
FauI	CCCGC	2 cut(s)	24, 477
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	327, 365, 453
FokI	GGATG	1 cut(s)	792
FriOI	GRGCYC	2 cut(s)	143, 353
Fsp4HI	GCNGC	3 cut(s)	327, 365, 453
GluI	GCNGC	3 cut(s)	327, 365, 453
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	1 cut(s)	679
Hin1II	CATG	2 cut(s)	739, 889
HinfI	GANTC	9 cut(s)	56, 218, 240, 266, 272, 340, 558, 682, 761
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	4 cut(s)	328, 458, 677, 841
Hpy166II	GTNNAC	3 cut(s)	710, 851, 903
Hpy188I	TCNGA	8 cut(s)	122, 138, 217, 223, 271, 399, 639, 660
Hpy188III	TCNNGA	4 cut(s)	77, 235, 237, 244
Hpy8I	GTNNAC	3 cut(s)	710, 851, 903
Hpy99I	CGWCG	1 cut(s)	286
HpyCH4III	ACNGT	4 cut(s)	254, 260, 316, 484
HpyCH4V	TGCA	3 cut(s)	455, 774, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 364, 731, 871
HpyF3I	CTNAG	2 cut(s)	153, 657
Hsp92II	CATG	2 cut(s)	739, 889
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	3 cut(s)	580, 634, 667
LmnI	GCTCC	4 cut(s)	79, 123, 139, 569
Lsp1109I	GCAGC	2 cut(s)	376, 439
LweI	GCATC	1 cut(s)	367
MaeIII	GTNAC	5 cut(s)	254, 260, 316, 331, 484
MalI	GATC	3 cut(s)	582, 636, 669
MboI	GATC	3 cut(s)	580, 634, 667
MboII	GAAGA	3 cut(s)	374, 630, 846
MhlI	GDGCHC	4 cut(s)	16, 84, 143, 353
MluCI	AATT	4 cut(s)	106, 589, 601, 718
MlyI	GAGTC	3 cut(s)	212, 260, 349
MmeI	TCCRAC	4 cut(s)	240, 246, 558, 775
MnlI	CCTC	9 cut(s)	199, 295, 316, 399, 553, 758, 785, 819, 852
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	2 cut(s)	50, 200
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	293, 378
MvaI	CCWGG	2 cut(s)	293, 378
MwoI	GCNNNNNNNGC	4 cut(s)	335, 364, 731, 871
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	3 cut(s)	580, 634, 667
NlaIII	CATG	2 cut(s)	739, 889
NlaIV	GGNNCC	3 cut(s)	185, 214, 677
NmuCI	GTSAC	3 cut(s)	254, 316, 331
PaeR7I	CTCGAG	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	6 cut(s)	56, 240, 272, 558, 682, 761
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	3 cut(s)	328, 366, 454
PleI	GAGTC	3 cut(s)	212, 260, 348
PpsI	GAGTC	3 cut(s)	212, 260, 348
Psp124BI	GAGCTC	2 cut(s)	143, 353
Psp6I	CCWGG	2 cut(s)	291, 376
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	2 cut(s)	291, 376
PspN4I	GGNNCC	3 cut(s)	185, 214, 677
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SacI	GAGCTC	2 cut(s)	143, 353
SaqAI	TTAA	2 cut(s)	50, 200
SatI	GCNGC	3 cut(s)	327, 365, 453
Sau3AI	GATC	3 cut(s)	580, 634, 667
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	3 cut(s)	212, 260, 349
ScrFI	CCNGG	2 cut(s)	293, 378
SduI	GDGCHC	4 cut(s)	16, 84, 143, 353
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	2 cut(s)	250, 453
Sfr274I	CTCGAG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	235
SmlI	CTYRAG	2 cut(s)	235, 703
SmoI	CTYRAG	2 cut(s)	235, 703
Sse9I	AATT	4 cut(s)	106, 589, 601, 718
SsiI	CCGC	3 cut(s)	17, 326, 470
SstI	GAGCTC	2 cut(s)	143, 353
StyD4I	CCNGG	2 cut(s)	291, 376
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	254, 260, 316, 484
TaqI	TCGA	5 cut(s)	204, 236, 284, 300, 811
TasI	AATT	4 cut(s)	106, 589, 601, 718
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	6 cut(s)	56, 240, 272, 558, 682, 761
Tru1I	TTAA	2 cut(s)	50, 200
Tru9I	TTAA	2 cut(s)	50, 200
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	3 cut(s)	254, 316, 331
TseI	GCWGC	2 cut(s)	364, 452
Tsp45I	GTSAC	3 cut(s)	254, 316, 331
TspDTI	ATGAA	1 cut(s)	674
TspGWI	ACGGA	2 cut(s)	335, 856
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	589, 718
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 570
XhoI	CTCGAG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.