Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Reverse (-)

15904541 .. 15907183

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0184400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTTGAGAGTGAAAACTCCCCAGAAGGCCAGGGCCAGAAGAGCGCTCGAGAAGCGTGCTCCCAAGCTCATCGAGACCGGGAAGAAGACTCTGATACTCCACGGCATGAGAACCAGCGCCGTCTTGAACGCGGTGTTATCAGACATTTACCATTTAAAGAAGGAGAGCGCCGTGAAATTCAGCCGCCGGAATAAGGATGTCTGCCCTTTCGAAAATGGTGGTGAGACCTCGCTTGAGTTCTTCTCGCATCAAACCGATTGCAGTCTTTTTGTTTATGGTTCTCATACAAAGAAGCGGCCCAACAATCTTGTCCTAGGGAGAACATATGATCACCATATCTATGATCTTATAGAGGTTGGGGTTGAGAACTATAAACGCATGGACTCATTTTCATACGATAAAAAACTATCTCCACATGTGGGGTCGAAGCCTTTCATTTGTTTTATTGGAGAAGGATTTGAGAGCGTAGGAGAGCTGAAACATTTGAAGGAGGTTTTGCTTGATCTGTTGCGAGGAGAGGTTGTAGAGAAACTAAATCTTGCTGGGTTAGATCGTGTATATCTTTGTACAGCTATATCTGCAAACAAAGTGATCCTTACACAGTGTGCACTGCGACTGAAAAAGTCTGGCACAGTAGTTCCAAGGACTGAACTGGTAGAAGTTGGACCCTCCATGGATTTGGTAGTTCGTCGGCATCGTCTTCCTAATGATGGCCTAAGGAAAGAAGCCATGAGAGTAGTTAGAGATCAGCCTAAGAAGGACAAAAATATTCAACAGGACACACTGCGAGGCAAGGTTGGCAAAATCAACATTCCAGATCAGAAGGTTGATGACACGAAGTATTTCCACACAAAGGTTGGAGATTCGTATGTGCCTCACAAGACAAAAGGAATTAAAAGGGAGCGCCGTGAAGCTAAAACGAGAAAGGAGGAAAAAGAGGGCGATGAGAATGCATCAAAAAGGCAGAAGGAAGATACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

327

Amino Acids

37.39

Weight (kDa)

9.69

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	37 - 231	1.7e-37	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	131, 184, 295
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	568
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	127, 487, 773
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	67, 475, 572, 914
AluI	AGCT	4 cut(s)	67, 475, 572, 914
Alw21I	GWGCWC	2 cut(s)	61, 610
Alw26I	GTCTC	2 cut(s)	68, 218
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	45
AoxI	GGCC	4 cut(s)	27, 33, 296, 712
ApaLI	GTGCAC	1 cut(s)	606
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	431, 842
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	4 cut(s)	46, 119, 170, 906
AspS9I	GGNCC	3 cut(s)	33, 297, 665
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	233, 323
AsuII	TTCGAA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	665
AvrII	CCTAGG	1 cut(s)	313
AxyI	CCTNAGG	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	610
BbsI	GAAGAC	2 cut(s)	92, 692
Bbv12I	GWGCWC	2 cut(s)	61, 610
BccI	CCATC	1 cut(s)	704
BceAI	ACGGC	4 cut(s)	104, 118, 155, 891
BcgI	CGANNNNNNTGC	4 cut(s)	38, 72, 932, 966
BciT130I	CCWGG	1 cut(s)	31
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	68, 218
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	4 cut(s)	47, 120, 171, 907
BisI	GCNGC	2 cut(s)	184, 296
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	2 cut(s)	185, 297
Bme1390I	CCNGG	2 cut(s)	31, 79
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	33, 297, 665
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	2 cut(s)	31, 79
BmsI	GCATC	3 cut(s)	256, 703, 962
BpiI	GAAGAC	2 cut(s)	92, 692
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	79
BsaI	GGTCTC	2 cut(s)	68, 218
BsaJI	CCNNGG	5 cut(s)	30, 100, 313, 641, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
Bse1I	ACTGG	1 cut(s)	657
Bse21I	CCTNAGG	1 cut(s)	716
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	5 cut(s)	30, 100, 313, 641, 672
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
BseMII	CTCAG	1 cut(s)	969
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	610
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	4 cut(s)	29, 35, 298, 714
BsiHKAI	GWGCWC	2 cut(s)	61, 610
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	78, 187
BslI	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
BsmAI	GTCTC	2 cut(s)	68, 218
BsmI	GAATGC	1 cut(s)	955
BsnI	GGCC	4 cut(s)	29, 35, 298, 714
Bso31I	GGTCTC	2 cut(s)	68, 218
BsoBI	CYCGRG	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	61, 610
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	3 cut(s)	131, 184, 295
BspANI	GGCC	4 cut(s)	29, 35, 298, 714
BspCNI	CTCAG	1 cut(s)	970
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	667
BspPI	GGATC	1 cut(s)	586
BspQI	GCTCTTC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	210
BspTNI	GGTCTC	2 cut(s)	68, 218
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	5 cut(s)	30, 100, 313, 641, 672
BssMI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
BssT1I	CCWWGG	3 cut(s)	313, 641, 672
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	603, 634
Bst6I	CTCTTC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	716, 753, 978
BstDSI	CCRYGG	2 cut(s)	100, 672
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	4 cut(s)	47, 120, 171, 907
BstHHI	GCGC	4 cut(s)	46, 119, 170, 906
BstKTI	GATC	7 cut(s)	331, 346, 505, 553, 594, 748, 820
BstMAI	GTCTC	2 cut(s)	68, 218
BstMBI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 52, 578, 798
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	29, 77
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	131
BstV2I	GAAGAC	2 cut(s)	92, 692
BstXI	CCANNNNNNTGG	1 cut(s)	679
Bsu36I	CCTNAGG	1 cut(s)	716
BsuRI	GGCC	4 cut(s)	29, 35, 298, 714
BtgI	CCRYGG	2 cut(s)	100, 672
BtgZI	GCGATG	1 cut(s)	957
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	2 cut(s)	608, 782
BtsIMutI	CAGTG	3 cut(s)	608, 608, 782
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	4 cut(s)	46, 119, 170, 906
Cfr13I	GGNCC	3 cut(s)	33, 297, 665
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	5 cut(s)	106, 379, 416, 673, 730
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	716, 753, 978
DpnI	GATC	7 cut(s)	330, 345, 504, 552, 593, 747, 819
DpnII	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
DraI	TTTAAA	1 cut(s)	156
DraIII	CACNNNGTG	1 cut(s)	605
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	3 cut(s)	313, 641, 672
Eco31I	GGTCTC	2 cut(s)	68, 218
Eco47I	GGWCC	1 cut(s)	665
Eco47III	AGCGCT	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	3 cut(s)	313, 641, 672
EcoT22I	ATGCAT	1 cut(s)	955
ErhI	CCWWGG	3 cut(s)	313, 641, 672
FaeI	CATG	5 cut(s)	109, 382, 419, 676, 733
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	5 cut(s)	105, 378, 415, 672, 729
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	184, 296
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	184, 296
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	4 cut(s)	45, 118, 169, 905
GluI	GCNGC	2 cut(s)	184, 296
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	4 cut(s)	47, 120, 171, 907
HaeIII	GGCC	4 cut(s)	29, 35, 298, 714
HapII	CCGG	2 cut(s)	78, 187
HhaI	GCGC	4 cut(s)	46, 119, 170, 906
Hin1II	CATG	5 cut(s)	109, 382, 419, 676, 733
Hin6I	GCGC	4 cut(s)	44, 117, 168, 904
HinP1I	GCGC	4 cut(s)	44, 117, 168, 904
HinfI	GANTC	3 cut(s)	88, 383, 863
HpaII	CCGG	2 cut(s)	78, 187
HphI	GGTGA	2 cut(s)	233, 323
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	3 cut(s)	93, 142, 822
Hpy188III	TCNNGA	4 cut(s)	49, 73, 124, 815
Hpy8I	GTNNAC	1 cut(s)	608
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	7 cut(s)	19, 154, 446, 481, 751, 817, 961
HpyCH4III	ACNGT	2 cut(s)	603, 634
HpyCH4V	TGCA	4 cut(s)	261, 581, 608, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 52, 578, 798
HpyF3I	CTNAG	3 cut(s)	716, 753, 978
Hsp92II	CATG	5 cut(s)	109, 382, 419, 676, 733
HspAI	GCGC	4 cut(s)	44, 117, 168, 904
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	64, 901
LweI	GCATC	3 cut(s)	256, 703, 962
MaeI	CTAG	1 cut(s)	314
MalI	GATC	7 cut(s)	330, 345, 504, 552, 593, 747, 819
MboI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
MboII	GAAGA	6 cut(s)	51, 94, 97, 232, 692, 983
MhlI	GDGCHC	2 cut(s)	61, 610
MluCI	AATT	2 cut(s)	176, 891
MlyI	GAGTC	2 cut(s)	82, 377
MmeI	TCCRAC	2 cut(s)	643, 838
Mph1103I	ATGCAT	1 cut(s)	955
MroXI	GAANNNNTTC	2 cut(s)	431, 842
MseI	TTAA	2 cut(s)	155, 894
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	2 cut(s)	78, 187
MspR9I	CCNGG	2 cut(s)	31, 79
Mva1269I	GAATGC	1 cut(s)	955
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	41, 52, 578, 798
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
NlaIII	CATG	5 cut(s)	109, 382, 419, 676, 733
NlaIV	GGNNCC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	47
PciI	ACATGT	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PctI	GAATGC	1 cut(s)	955
PdmI	GAANNNNTTC	2 cut(s)	431, 842
PfeI	GAWTC	1 cut(s)	863
PkrI	GCNGC	2 cut(s)	185, 297
PleI	GAGTC	2 cut(s)	82, 377
PpsI	GAGTC	2 cut(s)	82, 377
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	3 cut(s)	33, 297, 665
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	155, 894
SatI	GCNGC	2 cut(s)	184, 296
Sau3AI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
Sau96I	GGNCC	3 cut(s)	33, 297, 665
SchI	GAGTC	2 cut(s)	82, 377
ScrFI	CCNGG	2 cut(s)	31, 79
SduI	GDGCHC	2 cut(s)	61, 610
SfaNI	GCATC	3 cut(s)	256, 703, 962
Sfr274I	CTCGAG	1 cut(s)	47
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	47, 233
SmoI	CTYRAG	2 cut(s)	47, 233
Sse9I	AATT	2 cut(s)	176, 891
SsiI	CCGC	3 cut(s)	131, 184, 295
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	29, 77
StyI	CCWWGG	3 cut(s)	313, 641, 672
TaaI	ACNGT	2 cut(s)	603, 634
TaqI	TCGA	4 cut(s)	48, 72, 210, 425
TasI	AATT	2 cut(s)	176, 891
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	2 cut(s)	186, 298
TfiI	GAWTC	1 cut(s)	863
Tru1I	TTAA	2 cut(s)	155, 894
Tru9I	TTAA	2 cut(s)	155, 894
TscAI	CASTG	3 cut(s)	608, 615, 789
TspDTI	ATGAA	2 cut(s)	381, 424
TspRI	CASTG	3 cut(s)	608, 615, 789
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XhoI	CTCGAG	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	313
XmnI	GAANNNNTTC	2 cut(s)	431, 842
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.