Transcription factor bHLH130-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42280 AT2G42280 AT2G42280 |
| fragaria_vesca | FvH4_6g22880 FvH4_6g22880 |
| malus_domestica | MD12G1062600.v1.1 MD14G1063300.v1.1 |
| prunus_persica | Prupe.7G071500_v2.0.a1 |
| pyrus_communis | pycom12g05530 pycom14g05110 |
| rosa_chinensis | RchiOBHm_Chr3g0480621 |
| rosa_laevigata | RLG00000023464 |
| rosa_multiflora | Rmu_sc0002752.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00401200 |
| rosa_rugosa | Rorug03G0184300 Rorug03G0184400 |
| rosa_samantha | Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900 |
| rosa_wichuraiana | Rw3G021190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 916 |
| AccBSI | CCGCTC | 1 cut(s) | 576 |
| AccII | CGCG | 1 cut(s) | 161 |
| AciI | CCGC | 8 cut(s) | 51, 87, 248, 336, 350, 383, 576, 839 |
| AclWI | GGATC | 1 cut(s) | 764 |
| AcoI | YGGCCR | 3 cut(s) | 194, 384, 645 |
| AcsI | RAATTY | 1 cut(s) | 505 |
| AcuI | CTGAAG | 2 cut(s) | 618, 845 |
| AfaI | GTAC | 1 cut(s) | 681 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 29, 30, 121, 122, 799 |
| AgsI | TTSAA | 8 cut(s) | 9, 209, 405, 411, 467, 587, 671, 874 |
| AluBI | AGCT | 3 cut(s) | 324, 432, 583 |
| AluI | AGCT | 3 cut(s) | 324, 432, 583 |
| Alw21I | GWGCWC | 1 cut(s) | 326 |
| Alw26I | GTCTC | 1 cut(s) | 531 |
| AlwI | GGATC | 1 cut(s) | 764 |
| Ama87I | CYCGRG | 1 cut(s) | 55 |
| AoxI | GGCC | 6 cut(s) | 97, 194, 384, 442, 526, 645 |
| ApeKI | GCWGC | 2 cut(s) | 295, 298 |
| ApoI | RAATTY | 1 cut(s) | 505 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 869 |
| AspS9I | GGNCC | 2 cut(s) | 97, 939 |
| AsuC2I | CCSGG | 3 cut(s) | 56, 57, 266 |
| AsuHPI | GGTGA | 3 cut(s) | 244, 280, 605 |
| AsuII | TTCGAA | 1 cut(s) | 932 |
| AvaI | CYCGRG | 1 cut(s) | 55 |
| AvaII | GGWCC | 1 cut(s) | 939 |
| BalI | TGGCCA | 1 cut(s) | 647 |
| BanII | GRGCYC | 2 cut(s) | 62, 326 |
| Bbv12I | GWGCWC | 1 cut(s) | 326 |
| BbvI | GCAGC | 2 cut(s) | 282, 285 |
| BccI | CCATC | 3 cut(s) | 542, 549, 618 |
| BceAI | ACGGC | 4 cut(s) | 100, 181, 252, 834 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 882, 916 |
| BclI | TGATCA | 1 cut(s) | 568 |
| BcnI | CCSGG | 3 cut(s) | 56, 57, 266 |
| BcoDI | GTCTC | 1 cut(s) | 531 |
| BfaI | CTAG | 1 cut(s) | 830 |
| BfuAI | ACCTGC | 1 cut(s) | 916 |
| BglII | AGATCT | 1 cut(s) | 856 |
| BisI | GCNGC | 5 cut(s) | 88, 249, 296, 299, 384 |
| BlpI | GCTNAGC | 1 cut(s) | 881 |
| BlsI | GCNGC | 5 cut(s) | 89, 250, 297, 300, 385 |
| Bme1390I | CCNGG | 3 cut(s) | 56, 57, 266 |
| Bme18I | GGWCC | 1 cut(s) | 939 |
| BmeT110I | CYCGRG | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 2 cut(s) | 97, 939 |
| BmiI | GGNNCC | 1 cut(s) | 61 |
| BmrFI | CCNGG | 3 cut(s) | 56, 57, 266 |
| BmrI | ACTGGG | 1 cut(s) | 110 |
| BmsI | GCATC | 2 cut(s) | 24, 379 |
| BmuI | ACTGGG | 1 cut(s) | 110 |
| BpmI | CTGGAG | 1 cut(s) | 136 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 881 |
| Bpu14I | TTCGAA | 1 cut(s) | 932 |
| BpuMI | CCSGG | 3 cut(s) | 56, 57, 266 |
| BsaI | GGTCTC | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 5 cut(s) | 54, 55, 228, 314, 648 |
| BsaWI | WCCGGW | 1 cut(s) | 591 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 29, 30, 121, 122, 799 |
| Bse118I | RCCGGY | 2 cut(s) | 256, 440 |
| Bse1I | ACTGG | 1 cut(s) | 116 |
| Bse3DI | GCAATG | 2 cut(s) | 369, 729 |
| BseDI | CCNNGG | 5 cut(s) | 54, 55, 228, 314, 648 |
| BseGI | GGATG | 2 cut(s) | 39, 718 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 29, 30, 121, 122, 799 |
| BseMI | GCAATG | 2 cut(s) | 369, 729 |
| BseMII | CTCAG | 2 cut(s) | 52, 631 |
| BseNI | ACTGG | 1 cut(s) | 116 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseXI | GCAGC | 2 cut(s) | 282, 285 |
| BseYI | CCCAGC | 1 cut(s) | 436 |
| Bsh1236I | CGCG | 1 cut(s) | 161 |
| BshFI | GGCC | 6 cut(s) | 99, 196, 386, 444, 528, 647 |
| BsiHKAI | GWGCWC | 1 cut(s) | 326 |
| BsiHKCI | CYCGRG | 1 cut(s) | 55 |
| BsiSI | CCGG | 5 cut(s) | 56, 257, 265, 441, 592 |
| BslFI | GGGAC | 1 cut(s) | 776 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 29, 30, 121, 122, 799 |
| BsmAI | GTCTC | 1 cut(s) | 531 |
| BsmFI | GGGAC | 1 cut(s) | 776 |
| BsnI | GGCC | 6 cut(s) | 99, 196, 386, 444, 528, 647 |
| Bso31I | GGTCTC | 1 cut(s) | 531 |
| BsoBI | CYCGRG | 1 cut(s) | 55 |
| Bsp119I | TTCGAA | 1 cut(s) | 932 |
| Bsp1286I | GDGCHC | 2 cut(s) | 62, 326 |
| Bsp143I | GATC | 3 cut(s) | 568, 756, 856 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 881 |
| Bsp19I | CCATGG | 1 cut(s) | 648 |
| Bsp68I | TCGCGA | 1 cut(s) | 161 |
| BspACI | CCGC | 8 cut(s) | 51, 87, 248, 336, 350, 383, 576, 839 |
| BspANI | GGCC | 6 cut(s) | 99, 196, 386, 444, 528, 647 |
| BspCNI | CTCAG | 2 cut(s) | 51, 630 |
| BspFNI | CGCG | 1 cut(s) | 161 |
| BspHI | TCATGA | 1 cut(s) | 544 |
| BspLI | GGNNCC | 1 cut(s) | 61 |
| BspMI | ACCTGC | 1 cut(s) | 916 |
| BspPI | GGATC | 1 cut(s) | 764 |
| BspT104I | TTCGAA | 1 cut(s) | 932 |
| BspTNI | GGTCTC | 1 cut(s) | 531 |
| BsrBI | CCGCTC | 1 cut(s) | 576 |
| BsrDI | GCAATG | 2 cut(s) | 369, 729 |
| BsrFI | RCCGGY | 2 cut(s) | 256, 440 |
| BsrI | ACTGG | 1 cut(s) | 116 |
| BssAI | RCCGGY | 2 cut(s) | 256, 440 |
| BssECI | CCNNGG | 5 cut(s) | 54, 55, 228, 314, 648 |
| BssMI | GATC | 3 cut(s) | 568, 756, 856 |
| BssT1I | CCWWGG | 1 cut(s) | 648 |
| Bst4CI | ACNGT | 4 cut(s) | 107, 473, 870, 943 |
| BstBI | TTCGAA | 1 cut(s) | 932 |
| BstC8I | GCNNGC | 3 cut(s) | 258, 262, 442 |
| BstDEI | CTNAG | 3 cut(s) | 38, 617, 881 |
| BstDSI | CCRYGG | 2 cut(s) | 228, 648 |
| BstF5I | GGATG | 2 cut(s) | 39, 718 |
| BstFNI | CGCG | 1 cut(s) | 161 |
| BstKTI | GATC | 3 cut(s) | 571, 759, 859 |
| BstMAI | GTCTC | 1 cut(s) | 531 |
| BstMBI | GATC | 3 cut(s) | 568, 756, 856 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 77, 96, 245, 257, 644 |
| BstNSI | RCATGY | 2 cut(s) | 829, 919 |
| BstSCI | CCNGG | 3 cut(s) | 54, 55, 264 |
| BstUI | CGCG | 1 cut(s) | 161 |
| BstV1I | GCAGC | 2 cut(s) | 282, 285 |
| BstX2I | RGATCY | 1 cut(s) | 856 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 548 |
| BstYI | RGATCY | 1 cut(s) | 856 |
| BsuRI | GGCC | 6 cut(s) | 99, 196, 386, 444, 528, 647 |
| BtgI | CCRYGG | 2 cut(s) | 228, 648 |
| BtgZI | GCGATG | 1 cut(s) | 900 |
| BtsCI | GGATG | 2 cut(s) | 39, 718 |
| BtsI | GCAGTG | 1 cut(s) | 378 |
| BtsIMutI | CAGTG | 2 cut(s) | 378, 766 |
| BtuMI | TCGCGA | 1 cut(s) | 161 |
| BveI | ACCTGC | 1 cut(s) | 916 |
| Cac8I | GCNNGC | 3 cut(s) | 258, 262, 442 |
| CciI | TCATGA | 1 cut(s) | 544 |
| Cfr10I | RCCGGY | 2 cut(s) | 256, 440 |
| Cfr13I | GGNCC | 2 cut(s) | 97, 939 |
| Cfr9I | CCCGGG | 1 cut(s) | 55 |
| CpoI | CGGWCCG | 1 cut(s) | 939 |
| CseI | GACGC | 1 cut(s) | 886 |
| Csp6I | GTAC | 1 cut(s) | 680 |
| CspI | CGGWCCG | 1 cut(s) | 939 |
| CviAII | CATG | 6 cut(s) | 545, 599, 649, 799, 826, 916 |
| CviQI | GTAC | 1 cut(s) | 680 |
| DdeI | CTNAG | 3 cut(s) | 38, 617, 881 |
| DpnI | GATC | 3 cut(s) | 570, 758, 858 |
| DpnII | GATC | 3 cut(s) | 568, 756, 856 |
| DraI | TTTAAA | 1 cut(s) | 912 |
| EaeI | YGGCCR | 3 cut(s) | 194, 384, 645 |
| EciI | GGCGGA | 2 cut(s) | 40, 351 |
| Ecl136II | GAGCTC | 1 cut(s) | 324 |
| Eco130I | CCWWGG | 1 cut(s) | 648 |
| Eco24I | GRGCYC | 2 cut(s) | 62, 326 |
| Eco31I | GGTCTC | 1 cut(s) | 531 |
| Eco47I | GGWCC | 1 cut(s) | 939 |
| Eco53kI | GAGCTC | 1 cut(s) | 324 |
| Eco57I | CTGAAG | 2 cut(s) | 618, 845 |
| Eco88I | CYCGRG | 1 cut(s) | 55 |
| EcoICRI | GAGCTC | 1 cut(s) | 324 |
| EcoT14I | CCWWGG | 1 cut(s) | 648 |
| EcoT38I | GRGCYC | 2 cut(s) | 62, 326 |
| ErhI | CCWWGG | 1 cut(s) | 648 |
| FaeI | CATG | 6 cut(s) | 548, 602, 652, 802, 829, 919 |
| FaiI | YATR | 9 cut(s) | 174, 342, 546, 600, 650, 800, 827, 849, 917 |
| FaqI | GGGAC | 1 cut(s) | 776 |
| FatI | CATG | 6 cut(s) | 544, 598, 648, 798, 825, 915 |
| FauI | CCCGC | 2 cut(s) | 343, 569 |
| FbaI | TGATCA | 1 cut(s) | 568 |
| Fnu4HI | GCNGC | 5 cut(s) | 88, 249, 296, 299, 384 |
| FokI | GGATG | 2 cut(s) | 46, 705 |
| FriOI | GRGCYC | 2 cut(s) | 62, 326 |
| Fsp4HI | GCNGC | 5 cut(s) | 88, 249, 296, 299, 384 |
| FspBI | CTAG | 1 cut(s) | 830 |
| GluI | GCNGC | 5 cut(s) | 88, 249, 296, 299, 384 |
| GsaI | CCCAGC | 1 cut(s) | 440 |
| GsuI | CTGGAG | 1 cut(s) | 136 |
| HaeIII | GGCC | 6 cut(s) | 99, 196, 386, 444, 528, 647 |
| HapII | CCGG | 5 cut(s) | 56, 257, 265, 441, 592 |
| HgaI | GACGC | 1 cut(s) | 886 |
| Hin1II | CATG | 6 cut(s) | 548, 602, 652, 802, 829, 919 |
| HinfI | GANTC | 9 cut(s) | 5, 92, 134, 156, 182, 188, 595, 674, 934 |
| HpaII | CCGG | 5 cut(s) | 56, 257, 265, 441, 592 |
| HphI | GGTGA | 3 cut(s) | 244, 280, 605 |
| Hpy166II | GTNNAC | 3 cut(s) | 275, 623, 764 |
| Hpy188I | TCNGA | 9 cut(s) | 41, 139, 187, 315, 422, 485, 573, 864, 939 |
| Hpy188III | TCNNGA | 8 cut(s) | 153, 160, 209, 512, 545, 671, 793, 874 |
| Hpy8I | GTNNAC | 3 cut(s) | 275, 623, 764 |
| Hpy99I | CGWCG | 3 cut(s) | 86, 202, 244 |
| HpyAV | CCTTC | 2 cut(s) | 110, 238 |
| HpyCH4III | ACNGT | 4 cut(s) | 107, 473, 870, 943 |
| HpyCH4V | TGCA | 5 cut(s) | 362, 664, 687, 903, 919 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 77, 96, 245, 257, 644 |
| HpyF3I | CTNAG | 3 cut(s) | 38, 617, 881 |
| Hsp92II | CATG | 6 cut(s) | 548, 602, 652, 802, 829, 919 |
| KroI | GCCGGC | 2 cut(s) | 256, 440 |
| KroNI | GCCGGC | 2 cut(s) | 258, 442 |
| Ksp22I | TGATCA | 1 cut(s) | 568 |
| Kzo9I | GATC | 3 cut(s) | 568, 756, 856 |
| LmnI | GCTCC | 5 cut(s) | 53, 65, 367, 437, 580 |
| Lsp1109I | GCAGC | 2 cut(s) | 282, 285 |
| LweI | GCATC | 2 cut(s) | 24, 379 |
| MaeI | CTAG | 1 cut(s) | 830 |
| MaeIII | GTNAC | 2 cut(s) | 232, 393 |
| MalI | GATC | 3 cut(s) | 570, 758, 858 |
| MbiI | CCGCTC | 1 cut(s) | 576 |
| MboI | GATC | 3 cut(s) | 568, 756, 856 |
| MboII | GAAGA | 2 cut(s) | 759, 851 |
| MflI | RGATCY | 1 cut(s) | 856 |
| MhlI | GDGCHC | 2 cut(s) | 62, 326 |
| MlsI | TGGCCA | 1 cut(s) | 647 |
| MluCI | AATT | 6 cut(s) | 25, 73, 163, 212, 505, 554 |
| MluNI | TGGCCA | 1 cut(s) | 647 |
| MlyI | GAGTC | 2 cut(s) | 143, 176 |
| MmeI | TCCRAC | 1 cut(s) | 477 |
| Mox20I | TGGCCA | 1 cut(s) | 647 |
| MroNI | GCCGGC | 2 cut(s) | 256, 440 |
| MroXI | GAANNNNTTC | 1 cut(s) | 869 |
| MscI | TGGCCA | 1 cut(s) | 647 |
| MseI | TTAA | 3 cut(s) | 330, 852, 911 |
| MslI | CAYNNNNRTG | 1 cut(s) | 546 |
| Msp20I | TGGCCA | 1 cut(s) | 647 |
| MspI | CCGG | 5 cut(s) | 56, 257, 265, 441, 592 |
| MspR9I | CCNGG | 3 cut(s) | 56, 57, 266 |
| MssI | GTTTAAAC | 1 cut(s) | 912 |
| MvnI | CGCG | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 77, 96, 245, 257, 644 |
| NaeI | GCCGGC | 2 cut(s) | 258, 442 |
| NciI | CCSGG | 3 cut(s) | 56, 57, 266 |
| NcoI | CCATGG | 1 cut(s) | 648 |
| NdeII | GATC | 3 cut(s) | 568, 756, 856 |
| NgoMIV | GCCGGC | 2 cut(s) | 256, 440 |
| NlaIII | CATG | 6 cut(s) | 548, 602, 652, 802, 829, 919 |
| NlaIV | GGNNCC | 1 cut(s) | 61 |
| NmuCI | GTSAC | 2 cut(s) | 232, 393 |
| NruI | TCGCGA | 1 cut(s) | 161 |
| NspI | RCATGY | 2 cut(s) | 829, 919 |
| NspV | TTCGAA | 1 cut(s) | 932 |
| PagI | TCATGA | 1 cut(s) | 544 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 225 |
| PdiI | GCCGGC | 2 cut(s) | 258, 442 |
| PdmI | GAANNNNTTC | 1 cut(s) | 869 |
| PfeI | GAWTC | 7 cut(s) | 5, 92, 156, 188, 595, 674, 934 |
| PkrI | GCNGC | 5 cut(s) | 89, 250, 297, 300, 385 |
| PleI | GAGTC | 2 cut(s) | 142, 176 |
| PmeI | GTTTAAAC | 1 cut(s) | 912 |
| PpsI | GAGTC | 2 cut(s) | 142, 176 |
| Psp124BI | GAGCTC | 1 cut(s) | 326 |
| PspFI | CCCAGC | 1 cut(s) | 436 |
| PspN4I | GGNNCC | 1 cut(s) | 61 |
| PspPI | GGNCC | 2 cut(s) | 97, 939 |
| PsuI | RGATCY | 1 cut(s) | 856 |
| RruI | TCGCGA | 1 cut(s) | 161 |
| RsaI | GTAC | 1 cut(s) | 681 |
| RsaNI | GTAC | 1 cut(s) | 680 |
| RseI | CAYNNNNRTG | 1 cut(s) | 546 |
| Rsr2I | CGGWCCG | 1 cut(s) | 939 |
| RsrII | CGGWCCG | 1 cut(s) | 939 |
| SacI | GAGCTC | 1 cut(s) | 326 |
| SaqAI | TTAA | 3 cut(s) | 330, 852, 911 |
| SatI | GCNGC | 5 cut(s) | 88, 249, 296, 299, 384 |
| Sau3AI | GATC | 3 cut(s) | 568, 756, 856 |
| Sau96I | GGNCC | 2 cut(s) | 97, 939 |
| SchI | GAGTC | 2 cut(s) | 143, 176 |
| ScrFI | CCNGG | 3 cut(s) | 56, 57, 266 |
| SduI | GDGCHC | 2 cut(s) | 62, 326 |
| SetI | ASST | 9 cut(s) | 307, 326, 434, 461, 585, 618, 685, 709, 930 |
| SfaNI | GCATC | 2 cut(s) | 24, 379 |
| SfuI | TTCGAA | 1 cut(s) | 932 |
| SinI | GGWCC | 1 cut(s) | 939 |
| SmaI | CCCGGG | 1 cut(s) | 57 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 546 |
| Sse9I | AATT | 6 cut(s) | 25, 73, 163, 212, 505, 554 |
| SsiI | CCGC | 8 cut(s) | 51, 87, 248, 336, 350, 383, 576, 839 |
| SspI | AATATT | 1 cut(s) | 520 |
| SspMI | CTAG | 1 cut(s) | 830 |
| SstI | GAGCTC | 1 cut(s) | 326 |
| StyD4I | CCNGG | 3 cut(s) | 54, 55, 264 |
| StyI | CCWWGG | 1 cut(s) | 648 |
| TaaI | ACNGT | 4 cut(s) | 107, 473, 870, 943 |
| TaqI | TCGA | 4 cut(s) | 200, 724, 892, 932 |
| TasI | AATT | 6 cut(s) | 25, 73, 163, 212, 505, 554 |
| TauI | GCSGC | 3 cut(s) | 90, 251, 386 |
| TfiI | GAWTC | 7 cut(s) | 5, 92, 156, 188, 595, 674, 934 |
| Tru1I | TTAA | 3 cut(s) | 330, 852, 911 |
| Tru9I | TTAA | 3 cut(s) | 330, 852, 911 |
| TscAI | CASTG | 2 cut(s) | 385, 766 |
| TseFI | GTSAC | 2 cut(s) | 232, 393 |
| TseI | GCWGC | 2 cut(s) | 295, 298 |
| Tsp45I | GTSAC | 2 cut(s) | 232, 393 |
| TspDTI | ATGAA | 1 cut(s) | 389 |
| TspGWI | ACGGA | 2 cut(s) | 217, 769 |
| TspMI | CCCGGG | 1 cut(s) | 55 |
| TspRI | CASTG | 2 cut(s) | 385, 766 |
| VpaK11BI | GGWCC | 1 cut(s) | 939 |
| XapI | RAATTY | 1 cut(s) | 505 |
| XceI | RCATGY | 2 cut(s) | 829, 919 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 26, 486 |
| XmaI | CCCGGG | 1 cut(s) | 55 |
| XmnI | GAANNNNTTC | 1 cut(s) | 869 |
| XspI | CTAG | 1 cut(s) | 830 |