Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Forward (+)

23527445 .. 23530375

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTATAATAGTGCCCCGCCTATCAAATCTTGGCAAACAGAGTTGCCGTTAATGGATTCAAATACCCATCTCAATCTGGAGCACCAACAACCCCACCACCAACCCAATTCTGGGTTGCTCCGATTTCGCTCTGCTCCGAGCTCAATGTTCGCTGAGAACAACAACAACAACAACGCCGATTTGGGGGTCAATAAGGGAACTTTAATCGAGGGTGGTTCCGACTCCGACAGATTGTTCTCGAGATTCGTGAGCTACAGTCACAGTAACGACTCGGAATCGTGGCCGTCGAGTTTCCAGGAGTTCGAGGACAAATCTACGGTGACGGAGGCGGCTGTGACGGCGAGTCGTATTAGCTCACAGCATCAGCAGCAGGGGTTTCCTGGTCTTCCACCTCATTATCCGAGACAGAACTCGTTTGGGAGTGGTAATGGCTCTTATGGGTTGGTGGGTTCGGCCGCAGTGGATCATCACCCGCAAGCCAAGACTGTTACTTCCAATCTTGTTCGGCAGAGTAGTTCTCCTGCTGGGCTTTTCTCCAACAACACCTCTGTTCAAAATGGATTCCCATTTGGAGCTTGGAATGATCCATCAAATTTTGCCAATAATTTAGGTGGCATGAGAAGAGACCAAGATAATGACCAGAAGTTATTCTCTGCTACTCAGAATGGTGATCTTGGGAACCGGATTCATATATTATCCCACCACTTGAGTTTACCAAAAAATTCAACAGAGGTTGCCGTGGAAAAGTTCCTCCAACTCCAAGATTCTGTACCTTGCAAAGTTAGAGCAAAGCGAGGTTGTGCCACTCATCCTCGAAGCATTGCAGAAAGGGTGAGAAGAACACGGATTAGTGAACGAATGAGGAAGCTACAAGAGCTTGTGCCTAACATGGACAAGCAAACAAATACAGCAGACATGTTGGACTTGGCTGTTGATTATATTAAAGAACTTCAGAAACAGTTTAAGAGTCTTAGCGATGTTCGAGCCAACTGCAAGTGTTTGAGTATGCAGAAGCCCGTTCAAAATCAGATAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

345

Amino Acids

38.35

Weight (kDa)

8.84

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	273 - 318	6.9e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	17, 329, 456, 473
AclWI	GGATC	2 cut(s)	471, 578
AcoI	YGGCCR	2 cut(s)	281, 453
AcsI	RAATTY	2 cut(s)	592, 721
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	3 cut(s)	110, 111, 183
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	4 cut(s)	60, 554, 726, 1022
AhdI	GACNNNNNGTC	1 cut(s)	342
AjnI	CCWGG	2 cut(s)	294, 379
AluBI	AGCT	6 cut(s)	141, 252, 354, 575, 868, 877
AluI	AGCT	6 cut(s)	141, 252, 354, 575, 868, 877
Alw21I	GWGCWC	2 cut(s)	84, 143
Alw26I	GTCTC	2 cut(s)	397, 618
AlwI	GGATC	2 cut(s)	471, 578
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	2 cut(s)	281, 453
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	2 cut(s)	592, 721
Asp700I	GAANNNNTTC	1 cut(s)	647
AsuHPI	GGTGA	4 cut(s)	331, 461, 680, 844
AvaI	CYCGRG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	2 cut(s)	84, 143
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	75, 595
BceAI	ACGGC	4 cut(s)	31, 268, 354, 722
BcgI	CGANNNNNNTGC	2 cut(s)	972, 1006
BciT130I	CCWGG	2 cut(s)	296, 381
BcoDI	GTCTC	2 cut(s)	397, 618
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	3 cut(s)	330, 368, 456
BlsI	GCNGC	3 cut(s)	331, 369, 457
Bme1390I	CCNGG	2 cut(s)	296, 381
BmeRI	GACNNNNNGTC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	217, 680
BmrFI	CCNGG	2 cut(s)	296, 381
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	727
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	738
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 111, 183
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	296, 381
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	1 cut(s)	808
BseLI	CCNNNNNNNGG	3 cut(s)	110, 111, 183
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	2 cut(s)	144, 674
BseSI	GKGCMC	1 cut(s)	16
BseX3I	CGGCCG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	524
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	283, 455
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	84, 143
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	682
BslI	CCNNNNNNNGG	3 cut(s)	110, 111, 183
BsmAI	GTCTC	2 cut(s)	397, 618
BsnI	GGCC	2 cut(s)	283, 455
Bso31I	GGTCTC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	3 cut(s)	16, 84, 143
Bsp143I	GATC	3 cut(s)	463, 583, 670
BspACI	CCGC	4 cut(s)	17, 329, 456, 473
BspANI	GGCC	2 cut(s)	283, 455
BspCNI	CTCAG	2 cut(s)	145, 673
BspLI	GGNNCC	2 cut(s)	217, 680
BspPI	GGATC	2 cut(s)	471, 578
BspTNI	GGTCTC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	819
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	3 cut(s)	463, 583, 670
Bst2UI	CCWGG	2 cut(s)	296, 381
Bst4CI	ACNGT	5 cut(s)	257, 263, 319, 487, 960
Bst6I	CTCTTC	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	153, 660, 971
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	1 cut(s)	808
BstKTI	GATC	3 cut(s)	466, 586, 673
BstMAI	GTCTC	2 cut(s)	397, 618
BstMBI	GATC	3 cut(s)	463, 583, 670
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 367, 874
BstNI	CCWGG	2 cut(s)	296, 381
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	2 cut(s)	294, 379
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	377
BstZI	CGGCCG	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	283, 455
BtgI	CCRYGG	1 cut(s)	738
BtgZI	GCGATG	1 cut(s)	990
BtsCI	GGATG	1 cut(s)	808
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	3 cut(s)	616, 889, 916
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	3 cut(s)	153, 660, 971
DpnI	GATC	3 cut(s)	465, 585, 672
DpnII	GATC	3 cut(s)	463, 583, 670
DriI	GACNNNNNGTC	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	281, 453
EagI	CGGCCG	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	616
Eam1105I	GACNNNNNGTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	616
Ecl136II	GAGCTC	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	618
Eco52I	CGGCCG	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	935
Eco88I	CYCGRG	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	294, 379
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	3 cut(s)	619, 892, 919
FaiI	YATR	9 cut(s)	6, 438, 617, 690, 692, 890, 917, 939, 1007
FatI	CATG	3 cut(s)	615, 888, 915
FauI	CCCGC	2 cut(s)	24, 480
Fnu4HI	GCNGC	3 cut(s)	330, 368, 456
FokI	GGATG	1 cut(s)	795
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	330, 368, 456
GluI	GCNGC	3 cut(s)	330, 368, 456
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	283, 455
HapII	CCGG	1 cut(s)	682
Hin1II	CATG	3 cut(s)	619, 892, 919
HpaII	CCGG	1 cut(s)	682
HphI	GGTGA	4 cut(s)	331, 461, 680, 844
Hpy166II	GTNNAC	2 cut(s)	713, 854
Hpy188I	TCNGA	9 cut(s)	122, 138, 220, 226, 274, 402, 663, 954, 1029
Hpy188III	TCNNGA	4 cut(s)	77, 238, 240, 247
Hpy8I	GTNNAC	2 cut(s)	713, 854
Hpy99I	CGWCG	1 cut(s)	289
HpyCH4III	ACNGT	5 cut(s)	257, 263, 319, 487, 960
HpyCH4V	TGCA	4 cut(s)	777, 824, 993, 1009
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 367, 874
HpyF3I	CTNAG	3 cut(s)	153, 660, 971
Hsp92II	CATG	3 cut(s)	619, 892, 919
Kzo9I	GATC	3 cut(s)	463, 583, 670
LmnI	GCTCC	4 cut(s)	79, 123, 139, 572
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	370
MaeIII	GTNAC	5 cut(s)	257, 263, 319, 334, 487
MalI	GATC	3 cut(s)	465, 585, 672
MboI	GATC	3 cut(s)	463, 583, 670
MboII	GAAGA	3 cut(s)	377, 633, 849
MhlI	GDGCHC	3 cut(s)	16, 84, 143
MluCI	AATT	4 cut(s)	106, 592, 604, 721
MlyI	GAGTC	4 cut(s)	215, 263, 352, 976
MmeI	TCCRAC	5 cut(s)	243, 249, 561, 778, 900
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	4 cut(s)	50, 203, 942, 963
MspI	CCGG	1 cut(s)	682
MspR9I	CCNGG	2 cut(s)	296, 381
MvaI	CCWGG	2 cut(s)	296, 381
MwoI	GCNNNNNNNGC	3 cut(s)	338, 367, 874
NdeII	GATC	3 cut(s)	463, 583, 670
NlaIII	CATG	3 cut(s)	619, 892, 919
NlaIV	GGNNCC	2 cut(s)	217, 680
NmuCI	GTSAC	3 cut(s)	257, 319, 334
NspI	RCATGY	1 cut(s)	919
PaeR7I	CTCGAG	1 cut(s)	238
PciI	ACATGT	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	6 cut(s)	56, 243, 275, 561, 685, 764
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	331, 369, 457
PleI	GAGTC	4 cut(s)	215, 263, 351, 975
PpsI	GAGTC	4 cut(s)	215, 263, 351, 975
PscI	ACATGT	1 cut(s)	915
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	294, 379
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	294, 379
PspN4I	GGNNCC	2 cut(s)	217, 680
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	4 cut(s)	50, 203, 942, 963
SatI	GCNGC	3 cut(s)	330, 368, 456
Sau3AI	GATC	3 cut(s)	463, 583, 670
SchI	GAGTC	4 cut(s)	215, 263, 352, 976
ScrFI	CCNGG	2 cut(s)	296, 381
SduI	GDGCHC	3 cut(s)	16, 84, 143
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	238, 706
SmoI	CTYRAG	2 cut(s)	238, 706
Sse9I	AATT	4 cut(s)	106, 592, 604, 721
SsiI	CCGC	4 cut(s)	17, 329, 456, 473
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	294, 379
TaaI	ACNGT	5 cut(s)	257, 263, 319, 487, 960
TaqI	TCGA	6 cut(s)	207, 239, 287, 303, 814, 982
TasI	AATT	4 cut(s)	106, 592, 604, 721
TauI	GCSGC	2 cut(s)	332, 458
TfiI	GAWTC	6 cut(s)	56, 243, 275, 561, 685, 764
Tru1I	TTAA	4 cut(s)	50, 203, 942, 963
Tru9I	TTAA	4 cut(s)	50, 203, 942, 963
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	3 cut(s)	257, 319, 334
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	3 cut(s)	257, 319, 334
TspDTI	ATGAA	1 cut(s)	677
TspGWI	ACGGA	2 cut(s)	338, 859
TspRI	CASTG	1 cut(s)	465
XapI	RAATTY	2 cut(s)	592, 721
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 573
XhoI	CTCGAG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.