Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Forward (+)

10903896 .. 10906922

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTATAATGGTCCTCCAGCATCAAATTCTAGCACGAGCCCATTAATTCAAATCCCACAGTGGCAAACAGAGCAACCACCATTCATGGATTCAAATACCCATCAGAACTTGCACTCCCAAGAGCACCAAACTCACCAACCCAATTCTGGGTTACTGAGATTTCGCTCTGCTCCGAGCTCACTGCTGGCAAATTTCAACGAGAACAGCGATTTGGGTCTCATTGGTAAAAACCCAATTGAGGGTTCTGAGTCAGAGAGATTGTTTTCTAGATTTGCGAATTACACCCACACCAACGACTCGGATTCTTGGCCGTCGAGTTTTCAAGAGTTGGACGACAAGTCTACGGTGACGGCGACGGAGGCGGCGGTGACGGAGAGCCGTATGAGCTCACAGCAGCAGGGCTATTCTGGGCTCCCTCCTCATTATCCGAGACAGAGCTCGTTCAATGGCTCGTATGGGTTGGTGGGTTCGGCTGCAATGAATCATCACACTCAACCCAAGGCCGTTCACTCGAATCTTGTTCGACAAAGTAGCTCCCCTGCTGGGCTTTTCTCCAACTGCTCTGTTCAAAATGGATTCCAATTCGGAACTTGGAATGATTCATCAAATTTTGCTGAAAATTTAGGTGGCATGCGAAGAGACCAAGATAATGACGGGAAGTTATTTTCTGTTCCTCAGAATGGAGAGCTTGAAAACCGGATTCATTTACTATCCCACCACCTGAGTTTACCTAAAACATCAGCAGAAATTGCCATGGAAAAGTTCTTGCAACTCCAAGATTCTGTGCCTTGTAAAGTTAGAGCAAAGCGAGGTTGTGCCACTCATCCCCGAAGCATTGCAGAAAGAGTTAGAAGAACACGGATCAGTGAACGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGCTAGATTTGGCTGTTGAGTATATTAAAGACCTTCAGAAGCAGTTCAAGACTCTTAGCGACGTTCGAGCGAACTGCAAGTGTTTAAACATGCAGAAGAAGCCGGTTTCGAATCAGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

352

Amino Acids

39.26

Weight (kDa)

8.24

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	2 cut(s)	362, 365
AclWI	GGATC	1 cut(s)	869
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	4 cut(s)	25, 190, 607, 619
AcuI	CTGAAG	1 cut(s)	950
AfiI	CCNNNNNNNGG	7 cut(s)	146, 147, 238, 239, 543, 680, 904
AgsI	TTSAA	8 cut(s)	50, 93, 196, 323, 445, 569, 692, 979
AhdI	GACNNNNNGTC	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 226, 258
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	177, 387, 438, 534, 688, 892
AluI	AGCT	6 cut(s)	177, 387, 438, 534, 688, 892
Alw21I	GWGCWC	4 cut(s)	126, 179, 389, 440
Alw26I	GTCTC	3 cut(s)	221, 424, 633
AlwI	GGATC	1 cut(s)	869
AoxI	GGCC	2 cut(s)	308, 501
ApeKI	GCWGC	2 cut(s)	394, 473
ApoI	RAATTY	4 cut(s)	25, 190, 607, 619
AseI	ATTAAT	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	974
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	125, 358, 379
AsuII	TTCGAA	1 cut(s)	1040
AvaII	GGWCC	1 cut(s)	11
BanII	GRGCYC	5 cut(s)	41, 179, 389, 414, 440
BauI	CACGAG	1 cut(s)	34
Bbv12I	GWGCWC	4 cut(s)	126, 179, 389, 440
BbvI	GCAGC	2 cut(s)	406, 460
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	4 cut(s)	295, 363, 366, 488
BcgI	CGANNNNNNTGC	4 cut(s)	163, 197, 987, 1021
BcoDI	GTCTC	3 cut(s)	221, 424, 633
BfaI	CTAG	3 cut(s)	30, 267, 935
BisI	GCNGC	3 cut(s)	363, 395, 474
BlsI	GCNGC	3 cut(s)	364, 396, 475
Bme18I	GGWCC	1 cut(s)	11
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	413
BmsI	GCATC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	1040
BsaI	GGTCTC	2 cut(s)	221, 633
BsaJI	CCNNGG	2 cut(s)	498, 753
BsaWI	WCCGGW	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	7 cut(s)	146, 147, 238, 239, 543, 680, 904
Bse118I	RCCGGY	1 cut(s)	1033
Bse3DI	GCAATG	2 cut(s)	483, 834
BseDI	CCNNGG	2 cut(s)	498, 753
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	7 cut(s)	146, 147, 238, 239, 543, 680, 904
BseMI	GCAATG	2 cut(s)	483, 834
BseMII	CTCAG	4 cut(s)	146, 237, 689, 713
BseRI	GAGGAG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	406, 460
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	2 cut(s)	310, 503
BsiHKAI	GWGCWC	4 cut(s)	126, 179, 389, 440
BsiSI	CCGG	2 cut(s)	697, 1034
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	7 cut(s)	146, 147, 238, 239, 543, 680, 904
BsmAI	GTCTC	3 cut(s)	221, 424, 633
BsmFI	GGGAC	1 cut(s)	881
BsnI	GGCC	2 cut(s)	310, 503
Bso31I	GGTCTC	2 cut(s)	221, 633
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp1286I	GDGCHC	6 cut(s)	41, 126, 179, 389, 414, 440
Bsp143I	GATC	1 cut(s)	861
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	2 cut(s)	362, 365
BspANI	GGCC	2 cut(s)	310, 503
BspCNI	CTCAG	4 cut(s)	147, 238, 688, 714
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	869
BspT104I	TTCGAA	1 cut(s)	1040
BspTNI	GGTCTC	2 cut(s)	221, 633
BsrDI	GCAATG	2 cut(s)	483, 834
BsrFI	RCCGGY	1 cut(s)	1033
BssAI	RCCGGY	1 cut(s)	1033
BssECI	CCNNGG	2 cut(s)	498, 753
BssMI	GATC	1 cut(s)	861
BssSI	CACGAG	1 cut(s)	34
BssT1I	CCWWGG	2 cut(s)	498, 753
Bst2BI	CACGAG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	60, 346
Bst6I	CTCTTC	1 cut(s)	631
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstBI	TTCGAA	1 cut(s)	1040
BstC8I	GCNNGC	2 cut(s)	186, 632
BstDEI	CTNAG	5 cut(s)	155, 246, 675, 722, 986
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	1 cut(s)	823
BstKTI	GATC	1 cut(s)	864
BstMAI	GTCTC	3 cut(s)	221, 424, 633
BstMBI	GATC	1 cut(s)	861
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 359, 384, 749, 1030
BstNSI	RCATGY	3 cut(s)	634, 934, 1024
BstV1I	GCAGC	2 cut(s)	406, 460
BsuRI	GGCC	2 cut(s)	310, 503
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	3 cut(s)	65, 179, 871
Cac8I	GCNNGC	2 cut(s)	186, 632
Cfr10I	RCCGGY	1 cut(s)	1033
Cfr13I	GGNCC	1 cut(s)	11
CviAII	CATG	6 cut(s)	85, 631, 754, 904, 931, 1021
DdeI	CTNAG	5 cut(s)	155, 246, 675, 722, 986
DpnI	GATC	1 cut(s)	863
DpnII	GATC	1 cut(s)	861
DraI	TTTAAA	1 cut(s)	1017
DriI	GACNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	631
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	631
Ecl136II	GAGCTC	3 cut(s)	177, 387, 438
Eco130I	CCWWGG	2 cut(s)	498, 753
Eco24I	GRGCYC	5 cut(s)	41, 179, 389, 414, 440
Eco31I	GGTCTC	2 cut(s)	221, 633
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	3 cut(s)	177, 387, 438
Eco57I	CTGAAG	1 cut(s)	950
EcoICRI	GAGCTC	3 cut(s)	177, 387, 438
EcoT14I	CCWWGG	2 cut(s)	498, 753
EcoT38I	GRGCYC	5 cut(s)	41, 179, 389, 414, 440
ErhI	CCWWGG	2 cut(s)	498, 753
FaeI	CATG	6 cut(s)	88, 634, 757, 907, 934, 1024
FaqI	GGGAC	1 cut(s)	881
FatI	CATG	6 cut(s)	84, 630, 753, 903, 930, 1020
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	3 cut(s)	363, 395, 474
FokI	GGATG	1 cut(s)	810
FriOI	GRGCYC	5 cut(s)	41, 179, 389, 414, 440
Fsp4HI	GCNGC	3 cut(s)	363, 395, 474
FspBI	CTAG	3 cut(s)	30, 267, 935
GluI	GCNGC	3 cut(s)	363, 395, 474
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	310, 503
HapII	CCGG	2 cut(s)	697, 1034
Hin1II	CATG	6 cut(s)	88, 634, 757, 907, 934, 1024
HpaII	CCGG	2 cut(s)	697, 1034
HphI	GGTGA	3 cut(s)	125, 358, 379
Hpy166II	GTNNAC	4 cut(s)	342, 508, 728, 869
Hpy188III	TCNNGA	3 cut(s)	267, 323, 979
Hpy8I	GTNNAC	4 cut(s)	342, 508, 728, 869
Hpy99I	CGWCG	3 cut(s)	316, 358, 995
HpyAV	CCTTC	1 cut(s)	974
HpyCH4III	ACNGT	2 cut(s)	60, 346
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	6 cut(s)	112, 476, 769, 839, 1008, 1024
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 359, 384, 749, 1030
HpyF3I	CTNAG	5 cut(s)	155, 246, 675, 722, 986
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	6 cut(s)	88, 634, 757, 907, 934, 1024
Kzo9I	GATC	1 cut(s)	861
LmnI	GCTCC	3 cut(s)	175, 417, 539
Lsp1109I	GCAGC	2 cut(s)	406, 460
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	3 cut(s)	30, 267, 935
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	3 cut(s)	150, 346, 367
MalI	GATC	1 cut(s)	863
MboI	GATC	1 cut(s)	861
MboII	GAAGA	3 cut(s)	648, 864, 1039
MfeI	CAATTG	1 cut(s)	234
MhlI	GDGCHC	6 cut(s)	41, 126, 179, 389, 414, 440
MlyI	GAGTC	3 cut(s)	257, 290, 976
MmeI	TCCRAC	2 cut(s)	309, 579
MnlI	CCTC	8 cut(s)	24, 232, 352, 426, 429, 684, 803, 870
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	3 cut(s)	44, 957, 1016
MspI	CCGG	2 cut(s)	697, 1034
MssI	GTTTAAAC	1 cut(s)	1017
MunI	CAATTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	5 cut(s)	70, 359, 384, 749, 1030
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	1 cut(s)	861
NlaIII	CATG	6 cut(s)	88, 634, 757, 907, 934, 1024
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	2 cut(s)	346, 367
NspI	RCATGY	3 cut(s)	634, 934, 1024
NspV	TTCGAA	1 cut(s)	1040
PaeI	GCATGC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 350
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	9 cut(s)	89, 302, 481, 514, 576, 599, 700, 779, 1042
PkrI	GCNGC	3 cut(s)	364, 396, 475
PleI	GAGTC	3 cut(s)	256, 290, 976
PmeI	GTTTAAAC	1 cut(s)	1017
PpsI	GAGTC	3 cut(s)	256, 290, 976
PshBI	ATTAAT	1 cut(s)	44
Psp124BI	GAGCTC	3 cut(s)	179, 389, 440
PspFI	CCCAGC	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	11
SacI	GAGCTC	3 cut(s)	179, 389, 440
SaqAI	TTAA	3 cut(s)	44, 957, 1016
SatI	GCNGC	3 cut(s)	363, 395, 474
Sau3AI	GATC	1 cut(s)	861
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	3 cut(s)	257, 290, 976
SduI	GDGCHC	6 cut(s)	41, 126, 179, 389, 414, 440
SfaNI	GCATC	1 cut(s)	29
SfuI	TTCGAA	1 cut(s)	1040
SinI	GGWCC	1 cut(s)	11
SphI	GCATGC	1 cut(s)	634
SsiI	CCGC	2 cut(s)	362, 365
SspMI	CTAG	3 cut(s)	30, 267, 935
SstI	GAGCTC	3 cut(s)	179, 389, 440
StyI	CCWWGG	2 cut(s)	498, 753
TaaI	ACNGT	2 cut(s)	60, 346
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	5 cut(s)	314, 512, 523, 997, 1040
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	9 cut(s)	89, 302, 481, 514, 576, 599, 700, 779, 1042
Tru1I	TTAA	3 cut(s)	44, 957, 1016
Tru9I	TTAA	3 cut(s)	44, 957, 1016
TscAI	CASTG	3 cut(s)	65, 186, 871
TseFI	GTSAC	2 cut(s)	346, 367
TseI	GCWGC	2 cut(s)	394, 473
Tsp45I	GTSAC	2 cut(s)	346, 367
TspDTI	ATGAA	4 cut(s)	73, 494, 591, 692
TspGWI	ACGGA	3 cut(s)	371, 386, 874
TspRI	CASTG	3 cut(s)	65, 186, 871
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	4 cut(s)	25, 190, 607, 619
XbaI	TCTAGA	1 cut(s)	266
XceI	RCATGY	3 cut(s)	634, 934, 1024
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	3 cut(s)	30, 267, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.