Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Reverse (-)

5400735 .. 5402981

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTATAATGGTCCTCCAGCATCAAATTCTACCTTGACCTCATTAATTCAAATTTCCACTGTAGCAAGCAGTGCACCGCCATTCATGGATTCAAATACCCACCAACACAATTCTGGGTTCCTCAGATTTCGCTCTGCTCCGCGCTCCCTCCTCCCCAATTTCGCCGACGGCGGCGATTCGGGGCTTCACAGTAAAAACCCAATTCAGGGTTCTTCGGAGTCCGAGAGATTGTTCTCCAGATTCGCGAATTACTGCCATACCAACGACTCGGATTCCTGGCCGTCGAGTTTTCAAGAATTTGACGACAAATCCGTGGTGACATCAACGGAGGCGGCGGTGTCAGCGATCCGGATGAGCTCACAGGGAGGGTATTCTGGGCTGCTGCCCCCTCATTATCCGAGGCAGAGCTCGTTTAATGGCGGATATGGGTTGGCGGGTTCCGGTCCAATGGAGCGTCATCACACTCCGGCCAACAAGTCAGTTCATTCGAATTCAAATCTTGTTAGACAAAGTAGCTCCCCTGCTGGGCTTTTCTCCAACACCTCTCTTCAAAACGGATTCCCATTCGGAACTTGGAATGACTCATCGAATTTTCCAGAGAATTTAGGTGGCATGAGAAGAGACCAAGATCATAATGGGAAATTATTTTCGTTTGATCAGAACGGAGAGCTTGAAAACCGGTTTCATGTATTGTCCCATCACCTGAGTTTACCAAAAACTTCAGCAGAAATTGCCATGGAAAAGTTCTTGCAACTTCAAGATTCTGTACCTTGCAAAGTTAGAGCAAAGAGAGGTTGTGCCACTCATCCTCGAAGCATTGCCGAAAGAGTGAGAAGAACACGGATCAGTGAACGAATGAGGAAACTACAAGAACTCGTCCCGAACATGGACAAGCAAACCAACACGGCAGACATGCTCGATTTGGCAGTTGATTATATTAAAGATCTTCAGAAACAGTTCAAGACGCTTAGCGATGTTAGAGCAAACTGCAAGTGTTTAAACATGCAGAAGCCGGTGTCGAATCAGGTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

345

Amino Acids

38.07

Weight (kDa)

9.08

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	142, 245
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	7 cut(s)	77, 140, 171, 332, 335, 420, 434
AclWI	GGATC	2 cut(s)	340, 851
AcoI	YGGCCR	2 cut(s)	278, 468
AcsI	RAATTY	6 cut(s)	25, 51, 296, 490, 589, 601
AcuI	CTGAAG	2 cut(s)	705, 932
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	4 cut(s)	205, 206, 525, 886
AgeI	ACCGGT	1 cut(s)	678
AgsI	TTSAA	8 cut(s)	50, 93, 293, 495, 551, 674, 758, 961
AjnI	CCWGG	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	4 cut(s)	357, 408, 516, 670
AluI	AGCT	4 cut(s)	357, 408, 516, 670
Alw21I	GWGCWC	3 cut(s)	76, 359, 410
Alw26I	GTCTC	1 cut(s)	615
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	340, 851
Aor13HI	TCCGGA	1 cut(s)	348
AoxI	GGCC	2 cut(s)	278, 468
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	379, 382
ApoI	RAATTY	6 cut(s)	25, 51, 296, 490, 589, 601
AseI	ATTAAT	1 cut(s)	44
AsiGI	ACCGGT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	956
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	11, 443
AsuHPI	GGTGA	2 cut(s)	328, 692
AsuII	TTCGAA	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	11, 443
BaeGI	GKGCMC	1 cut(s)	76
BanII	GRGCYC	2 cut(s)	359, 410
Bbv12I	GWGCWC	3 cut(s)	76, 359, 410
BbvI	GCAGC	2 cut(s)	366, 369
BccI	CCATC	1 cut(s)	705
BceAI	ACGGC	3 cut(s)	184, 265, 921
BciT130I	CCWGG	1 cut(s)	277
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	4 cut(s)	172, 333, 380, 383
BlpI	GCTNAGC	1 cut(s)	968
BlsI	GCNGC	4 cut(s)	173, 334, 381, 384
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	2 cut(s)	11, 443
BmgT120I	GGNCC	2 cut(s)	11, 443
BmiI	GGNNCC	2 cut(s)	119, 439
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	968
Bpu14I	TTCGAA	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	312, 398, 735
BsaWI	WCCGGW	3 cut(s)	348, 440, 678
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 206, 525, 886
Bse118I	RCCGGY	2 cut(s)	678, 1012
Bse3DI	GCAATG	1 cut(s)	816
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	312, 398, 735
BseGI	GGATG	2 cut(s)	357, 805
BseLI	CCNNNNNNNGG	4 cut(s)	205, 206, 525, 886
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	136, 695
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	366, 369
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	2 cut(s)	142, 245
BshFI	GGCC	2 cut(s)	280, 470
BshTI	ACCGGT	1 cut(s)	678
BsiHKAI	GWGCWC	3 cut(s)	76, 359, 410
BsiSI	CCGG	5 cut(s)	349, 441, 467, 679, 1013
BslFI	GGGAC	2 cut(s)	679, 863
BslI	CCNNNNNNNGG	4 cut(s)	205, 206, 525, 886
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	679, 863
BsnI	GGCC	2 cut(s)	280, 470
Bso31I	GGTCTC	1 cut(s)	615
Bsp119I	TTCGAA	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	76, 359, 410
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	5 cut(s)	345, 628, 655, 843, 943
Bsp1720I	GCTNAGC	1 cut(s)	968
Bsp19I	CCATGG	1 cut(s)	735
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	7 cut(s)	77, 140, 171, 332, 335, 420, 434
BspANI	GGCC	2 cut(s)	280, 470
BspCNI	CTCAG	2 cut(s)	135, 696
BspEI	TCCGGA	1 cut(s)	348
BspFNI	CGCG	2 cut(s)	142, 245
BspLI	GGNNCC	2 cut(s)	119, 439
BspPI	GGATC	2 cut(s)	340, 851
BspT104I	TTCGAA	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	816
BsrFI	RCCGGY	2 cut(s)	678, 1012
BssAI	RCCGGY	2 cut(s)	678, 1012
BssECI	CCNNGG	3 cut(s)	312, 398, 735
BssMI	GATC	5 cut(s)	345, 628, 655, 843, 943
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	61, 191, 957
Bst6I	CTCTTC	2 cut(s)	552, 613
BstAPI	GCANNNNNTGC	2 cut(s)	71, 731
BstBI	TTCGAA	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	122, 704, 968
BstDSI	CCRYGG	2 cut(s)	312, 735
BstF5I	GGATG	2 cut(s)	357, 805
BstFNI	CGCG	2 cut(s)	142, 245
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	5 cut(s)	348, 631, 658, 846, 946
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	5 cut(s)	345, 628, 655, 843, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 341, 731
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	2 cut(s)	916, 1006
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	76
BstUI	CGCG	2 cut(s)	142, 245
BstV1I	GCAGC	2 cut(s)	366, 369
BstX2I	RGATCY	1 cut(s)	943
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	2 cut(s)	280, 470
BtgI	CCRYGG	2 cut(s)	312, 735
BtgZI	GCGATG	1 cut(s)	987
BtsCI	GGATG	2 cut(s)	357, 805
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	3 cut(s)	57, 76, 853
BtuMI	TCGCGA	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	2 cut(s)	678, 1012
Cfr13I	GGNCC	2 cut(s)	11, 443
CseI	GACGC	2 cut(s)	443, 973
Csp6I	GTAC	1 cut(s)	767
CspAI	ACCGGT	1 cut(s)	678
CviAII	CATG	7 cut(s)	85, 613, 686, 736, 886, 913, 1003
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	3 cut(s)	122, 704, 968
DpnI	GATC	5 cut(s)	347, 630, 657, 845, 945
DpnII	GATC	5 cut(s)	345, 628, 655, 843, 943
DraI	TTTAAA	1 cut(s)	999
EaeI	YGGCCR	2 cut(s)	278, 468
Eam1104I	CTCTTC	2 cut(s)	552, 613
EarI	CTCTTC	2 cut(s)	552, 613
EciI	GGCGGA	1 cut(s)	435
Ecl136II	GAGCTC	2 cut(s)	357, 408
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	2 cut(s)	359, 410
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	11, 443
Eco53kI	GAGCTC	2 cut(s)	357, 408
Eco57I	CTGAAG	2 cut(s)	705, 932
EcoICRI	GAGCTC	2 cut(s)	357, 408
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	2 cut(s)	359, 410
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	7 cut(s)	88, 616, 689, 739, 889, 916, 1006
FaqI	GGGAC	2 cut(s)	679, 863
FatI	CATG	7 cut(s)	84, 612, 685, 735, 885, 912, 1002
FauI	CCCGC	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	4 cut(s)	172, 333, 380, 383
FokI	GGATG	2 cut(s)	364, 792
FriOI	GRGCYC	2 cut(s)	359, 410
Fsp4HI	GCNGC	4 cut(s)	172, 333, 380, 383
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	4 cut(s)	172, 333, 380, 383
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	280, 470
HapII	CCGG	5 cut(s)	349, 441, 467, 679, 1013
HgaI	GACGC	2 cut(s)	443, 973
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	7 cut(s)	88, 616, 689, 739, 889, 916, 1006
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HpaII	CCGG	5 cut(s)	349, 441, 467, 679, 1013
HphI	GGTGA	2 cut(s)	328, 692
Hpy166II	GTNNAC	3 cut(s)	74, 710, 851
Hpy188I	TCNGA	8 cut(s)	125, 217, 223, 271, 399, 569, 660, 951
Hpy188III	TCNNGA	8 cut(s)	237, 244, 293, 349, 596, 758, 880, 961
Hpy8I	GTNNAC	3 cut(s)	74, 710, 851
Hpy99I	CGWCG	2 cut(s)	170, 286
HpyCH4III	ACNGT	3 cut(s)	61, 191, 957
HpyCH4V	TGCA	5 cut(s)	74, 751, 774, 990, 1006
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 341, 731
HpyF3I	CTNAG	3 cut(s)	122, 704, 968
Hsp92II	CATG	7 cut(s)	88, 616, 689, 739, 889, 916, 1006
HspAI	GCGC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	345, 628, 655, 843, 943
LmnI	GCTCC	4 cut(s)	142, 149, 451, 521
Lsp1109I	GCAGC	2 cut(s)	366, 369
LweI	GCATC	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	5 cut(s)	347, 630, 657, 845, 945
MboI	GATC	5 cut(s)	345, 628, 655, 843, 943
MboII	GAAGA	5 cut(s)	204, 539, 630, 846, 938
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	3 cut(s)	76, 359, 410
MlyI	GAGTC	3 cut(s)	227, 260, 575
MmeI	TCCRAC	1 cut(s)	561
MroI	TCCGGA	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	956
MseI	TTAA	4 cut(s)	44, 414, 939, 998
MspI	CCGG	5 cut(s)	349, 441, 467, 679, 1013
MspR9I	CCNGG	1 cut(s)	277
MssI	GTTTAAAC	1 cut(s)	999
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	2 cut(s)	142, 245
MwoI	GCNNNNNNNGC	3 cut(s)	71, 341, 731
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	5 cut(s)	345, 628, 655, 843, 943
NlaIII	CATG	7 cut(s)	88, 616, 689, 739, 889, 916, 1006
NlaIV	GGNNCC	2 cut(s)	119, 439
NmuCI	GTSAC	1 cut(s)	316
NruI	TCGCGA	1 cut(s)	245
NspI	RCATGY	2 cut(s)	916, 1006
NspV	TTCGAA	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	7 cut(s)	89, 176, 240, 272, 558, 761, 1021
PinAI	ACCGGT	1 cut(s)	678
PkrI	GCNGC	4 cut(s)	173, 334, 381, 384
PleI	GAGTC	3 cut(s)	226, 260, 575
PmeI	GTTTAAAC	1 cut(s)	999
PpsI	GAGTC	3 cut(s)	226, 260, 575
PshBI	ATTAAT	1 cut(s)	44
Psp124BI	GAGCTC	2 cut(s)	359, 410
Psp6I	CCWGG	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	119, 439
PspPI	GGNCC	2 cut(s)	11, 443
PsuI	RGATCY	1 cut(s)	943
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SacI	GAGCTC	2 cut(s)	359, 410
SaqAI	TTAA	4 cut(s)	44, 414, 939, 998
SatI	GCNGC	4 cut(s)	172, 333, 380, 383
Sau3AI	GATC	5 cut(s)	345, 628, 655, 843, 943
Sau96I	GGNCC	2 cut(s)	11, 443
SchI	GAGTC	3 cut(s)	227, 260, 575
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	3 cut(s)	76, 359, 410
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	488
SinI	GGWCC	2 cut(s)	11, 443
SsiI	CCGC	7 cut(s)	77, 140, 171, 332, 335, 420, 434
SstI	GAGCTC	2 cut(s)	359, 410
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	3 cut(s)	61, 191, 957
TaqI	TCGA	6 cut(s)	284, 488, 587, 811, 918, 1019
TauI	GCSGC	2 cut(s)	174, 335
TfiI	GAWTC	7 cut(s)	89, 176, 240, 272, 558, 761, 1021
Tru1I	TTAA	4 cut(s)	44, 414, 939, 998
Tru9I	TTAA	4 cut(s)	44, 414, 939, 998
TscAI	CASTG	3 cut(s)	64, 76, 853
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	379, 382
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	73, 473, 674
TspGWI	ACGGA	5 cut(s)	301, 341, 570, 678, 856
TspRI	CASTG	3 cut(s)	64, 76, 853
VneI	GTGCAC	1 cut(s)	72
VpaK11BI	GGWCC	2 cut(s)	11, 443
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	6 cut(s)	25, 51, 296, 490, 589, 601
XceI	RCATGY	2 cut(s)	916, 1006
XcmI	CCANNNNNNNNNTGG	3 cut(s)	110, 570, 632
XmnI	GAANNNNTTC	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.