MD12G1062600.v1.1
BHLH Family

Transcription factor bHLH130-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
7352044 .. 7354628
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1062600.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGTATAATGGTCCTCCAGCATCCAATTCTACCTTGACCCCATTAATTCAAATTTCCACTGTAGCAAGCAGTGCACCGCCATTCATGGATTCAAATACCCACCAACACAATTCTGGGTTGCTCAGATTTCGCTCTGCTCCGCACTCCCTCCTCTCCAATTTCGCCGACGGCGGCGATTCGGGGCTTCACAGTAAAAGCCCAGTTGAGGGTTCTTCGGAGTCCGAGAGATTGTTCTCCAGATTCGCGAATTACAGCCATATCAACGACTCAGATTCCTGGCCGTCGAGTTTTCAAGAATTTGACGACAAATCCGTGGTGACGGCAACGGAGGCGGCAGTGTCAGCGATCCGGATGAGCTCACAGGGAGGGTATTCTGGGCTGCTGCCCCCTCATTATCCGAGGCAGAGCTCGTTTAATGGCGGATATGGGTTGGCGGGTTCCGGTCCAATGGAACGTCATCACACTCCGGCCAACAAGTCAGTTCATTCGAATTCAAATCTTGTTAGACAAAGTAGTTCCCCTGCTGGGCTTTTCTCCAACACCTCTCTTCAAAACGGATTCCCATTCGGAACTTGGAATGACTCATCGAATTTTCCAGAGAGTTTAGATGGCATGAGAAGAGACCAAGATCATGATGGGAAATTATTTTCGGTTGATCAGAACGGAGAGCTTGAAAACCGGTTTCATGTATTATCCCATCACCTGAGTTTACCAAAAACTTCAGCAGACATTGCCATGGAAAAGTTCTTGCAACTTCAAGATTCTGTACCTTGCAAAGTTAGAGCAAAGAGAGGTTGTGCCACTCATCCTCGAAGCATTGCCGAAAGAGTGAGAAGAACACGGATCAGTGAACGAATGAGGAAACTACAAGAACTCGTCCCGAACATGGACAAGCAAACCAACACTGCAGACATGCTCGATTTGGCAGTTGATTATATTAAAGATCTTCAGAAACAGTTCAAGACGCTTAGCGATGTTAGAGCAAACTGCAAATGTTTAAACATGCAGAAGCCGGTGTCGAATCCGGTGTCGAATCAGGAAAGTGACGGGGGAAGTCGGTTGAAAGTTTGA

Protein Analysis

357

Amino Acids

39.16

Weight (kDa)

8.31

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 272 - 317 6.4e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010225)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 245
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 6 cut(s) 77, 140, 171, 332, 420, 434
AclWI GGATC 2 cut(s) 340, 851
AcoI YGGCCR 2 cut(s) 278, 468
AcsI RAATTY 4 cut(s) 51, 296, 490, 589
AcuI CTGAAG 2 cut(s) 705, 932
AfaI GTAC 1 cut(s) 768
AfiI CCNNNNNNNGG 4 cut(s) 205, 206, 525, 886
AgeI ACCGGT 1 cut(s) 678
AgsI TTSAA 9 cut(s) 50, 93, 293, 495, 551, 674, 758, 961, 1063
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 3 cut(s) 357, 408, 670
AluI AGCT 3 cut(s) 357, 408, 670
Alw21I GWGCWC 3 cut(s) 76, 359, 410
Alw26I GTCTC 1 cut(s) 615
Alw44I GTGCAC 1 cut(s) 72
AlwI GGATC 2 cut(s) 340, 851
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 2 cut(s) 278, 468
ApaLI GTGCAC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 379, 382
ApoI RAATTY 4 cut(s) 51, 296, 490, 589
ArsI GACNNNNNNTTYG 2 cut(s) 1013, 1045
AseI ATTAAT 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 956
AspS9I GGNCC 2 cut(s) 11, 443
AsuHPI GGTGA 2 cut(s) 328, 692
AsuII TTCGAA 1 cut(s) 488
AvaII GGWCC 2 cut(s) 11, 443
BaeGI GKGCMC 1 cut(s) 76
BanII GRGCYC 2 cut(s) 359, 410
Bbv12I GWGCWC 3 cut(s) 76, 359, 410
BbvI GCAGC 2 cut(s) 366, 369
BccI CCATC 3 cut(s) 602, 629, 705
BceAI ACGGC 3 cut(s) 184, 265, 336
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 1 cut(s) 615
BfmI CTRYAG 2 cut(s) 60, 906
BglII AGATCT 1 cut(s) 943
BisI GCNGC 4 cut(s) 172, 333, 380, 383
BlpI GCTNAGC 1 cut(s) 968
BlsI GCNGC 4 cut(s) 173, 334, 381, 384
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 2 cut(s) 11, 443
BmgT120I GGNCC 2 cut(s) 11, 443
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 1 cut(s) 277
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 220
Bpu1102I GCTNAGC 1 cut(s) 968
Bpu14I TTCGAA 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 312, 398, 735
BsaWI WCCGGW 4 cut(s) 348, 440, 678, 1024
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 206, 525, 886
Bse118I RCCGGY 2 cut(s) 678, 1012
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 2 cut(s) 729, 816
BseAI TCCGGA 1 cut(s) 348
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 3 cut(s) 312, 398, 735
BseGI GGATG 3 cut(s) 20, 357, 805
BseLI CCNNNNNNNGG 4 cut(s) 205, 206, 525, 886
BseMI GCAATG 2 cut(s) 729, 816
BseMII CTCAG 3 cut(s) 136, 282, 695
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 366, 369
BseYI CCCAGC 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 2 cut(s) 280, 470
BshTI ACCGGT 1 cut(s) 678
BsiHKAI GWGCWC 3 cut(s) 76, 359, 410
BsiSI CCGG 6 cut(s) 349, 441, 467, 679, 1013, 1025
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 4 cut(s) 205, 206, 525, 886
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 2 cut(s) 280, 470
Bso31I GGTCTC 1 cut(s) 615
Bsp119I TTCGAA 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 76, 359, 410
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 5 cut(s) 345, 628, 655, 843, 943
Bsp1720I GCTNAGC 1 cut(s) 968
Bsp19I CCATGG 1 cut(s) 735
Bsp68I TCGCGA 1 cut(s) 245
BspACI CCGC 6 cut(s) 77, 140, 171, 332, 420, 434
BspANI GGCC 2 cut(s) 280, 470
BspCNI CTCAG 3 cut(s) 135, 281, 696
BspEI TCCGGA 1 cut(s) 348
BspFNI CGCG 1 cut(s) 245
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 2 cut(s) 340, 851
BspT104I TTCGAA 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 615
BsrDI GCAATG 2 cut(s) 729, 816
BsrFI RCCGGY 2 cut(s) 678, 1012
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 2 cut(s) 678, 1012
BssECI CCNNGG 3 cut(s) 312, 398, 735
BssMI GATC 5 cut(s) 345, 628, 655, 843, 943
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 3 cut(s) 61, 191, 957
Bst6I CTCTTC 2 cut(s) 552, 613
BstAPI GCANNNNNTGC 2 cut(s) 71, 731
BstBI TTCGAA 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 4 cut(s) 122, 268, 704, 968
BstDSI CCRYGG 2 cut(s) 312, 735
BstF5I GGATG 3 cut(s) 20, 357, 805
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 5 cut(s) 348, 631, 658, 846, 946
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 5 cut(s) 345, 628, 655, 843, 943
BstMWI GCNNNNNNNGC 4 cut(s) 71, 329, 341, 731
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 2 cut(s) 916, 1006
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 2 cut(s) 60, 906
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 366, 369
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
BsuRI GGCC 2 cut(s) 280, 470
BtgI CCRYGG 2 cut(s) 312, 735
BtgZI GCGATG 1 cut(s) 987
BtsCI GGATG 3 cut(s) 20, 357, 805
BtsI GCAGTG 3 cut(s) 76, 342, 903
BtsIMutI CAGTG 5 cut(s) 57, 76, 342, 853, 903
BtuMI TCGCGA 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 67
CciI TCATGA 1 cut(s) 631
Cfr10I RCCGGY 2 cut(s) 678, 1012
Cfr13I GGNCC 2 cut(s) 11, 443
CseI GACGC 1 cut(s) 973
Csp6I GTAC 1 cut(s) 767
CspAI ACCGGT 1 cut(s) 678
CviAII CATG 8 cut(s) 85, 613, 632, 686, 736, 886, 913, 1003
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 4 cut(s) 122, 268, 704, 968
DpnI GATC 5 cut(s) 347, 630, 657, 845, 945
DpnII GATC 5 cut(s) 345, 628, 655, 843, 943
DraI TTTAAA 1 cut(s) 999
EaeI YGGCCR 2 cut(s) 278, 468
Eam1104I CTCTTC 2 cut(s) 552, 613
EarI CTCTTC 2 cut(s) 552, 613
EciI GGCGGA 1 cut(s) 435
Ecl136II GAGCTC 2 cut(s) 357, 408
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 2 cut(s) 359, 410
Eco31I GGTCTC 1 cut(s) 615
Eco47I GGWCC 2 cut(s) 11, 443
Eco53kI GAGCTC 2 cut(s) 357, 408
Eco57I CTGAAG 2 cut(s) 705, 932
EcoICRI GAGCTC 2 cut(s) 357, 408
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 2 cut(s) 359, 410
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 8 cut(s) 88, 616, 635, 689, 739, 889, 916, 1006
FaqI GGGAC 1 cut(s) 863
FatI CATG 8 cut(s) 84, 612, 631, 685, 735, 885, 912, 1002
FauI CCCGC 1 cut(s) 427
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 4 cut(s) 172, 333, 380, 383
FokI GGATG 3 cut(s) 7, 364, 792
FriOI GRGCYC 2 cut(s) 359, 410
Fsp4HI GCNGC 4 cut(s) 172, 333, 380, 383
GluI GCNGC 4 cut(s) 172, 333, 380, 383
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 2 cut(s) 280, 470
HapII CCGG 6 cut(s) 349, 441, 467, 679, 1013, 1025
HgaI GACGC 1 cut(s) 973
Hin1II CATG 8 cut(s) 88, 616, 635, 689, 739, 889, 916, 1006
HpaII CCGG 6 cut(s) 349, 441, 467, 679, 1013, 1025
HphI GGTGA 2 cut(s) 328, 692
Hpy166II GTNNAC 3 cut(s) 74, 710, 851
Hpy188I TCNGA 8 cut(s) 125, 217, 223, 271, 399, 569, 660, 951
Hpy8I GTNNAC 3 cut(s) 74, 710, 851
Hpy99I CGWCG 2 cut(s) 170, 286
HpyCH4III ACNGT 3 cut(s) 61, 191, 957
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 6 cut(s) 74, 751, 774, 908, 990, 1006
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 329, 341, 731
HpyF3I CTNAG 4 cut(s) 122, 268, 704, 968
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 8 cut(s) 88, 616, 635, 689, 739, 889, 916, 1006
Kpn2I TCCGGA 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 5 cut(s) 345, 628, 655, 843, 943
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 2 cut(s) 366, 369
LweI GCATC 1 cut(s) 29
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 2 cut(s) 316, 1043
MalI GATC 5 cut(s) 347, 630, 657, 845, 945
MboI GATC 5 cut(s) 345, 628, 655, 843, 943
MboII GAAGA 5 cut(s) 204, 539, 630, 846, 938
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 3 cut(s) 76, 359, 410
MlyI GAGTC 3 cut(s) 227, 260, 575
MmeI TCCRAC 1 cut(s) 561
MroI TCCGGA 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 956
MseI TTAA 4 cut(s) 44, 414, 939, 998
MslI CAYNNNNRTG 1 cut(s) 734
MspI CCGG 6 cut(s) 349, 441, 467, 679, 1013, 1025
MspR9I CCNGG 1 cut(s) 277
MssI GTTTAAAC 1 cut(s) 999
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 71, 329, 341, 731
NcoI CCATGG 1 cut(s) 735
NdeII GATC 5 cut(s) 345, 628, 655, 843, 943
NlaIII CATG 8 cut(s) 88, 616, 635, 689, 739, 889, 916, 1006
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 2 cut(s) 316, 1043
NruI TCGCGA 1 cut(s) 245
NspI RCATGY 2 cut(s) 916, 1006
NspV TTCGAA 1 cut(s) 488
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 8 cut(s) 89, 176, 240, 272, 558, 761, 1021, 1033
PinAI ACCGGT 1 cut(s) 678
PkrI GCNGC 4 cut(s) 173, 334, 381, 384
PleI GAGTC 3 cut(s) 226, 260, 575
PmeI GTTTAAAC 1 cut(s) 999
PpsI GAGTC 3 cut(s) 226, 260, 575
PshBI ATTAAT 1 cut(s) 44
Psp124BI GAGCTC 2 cut(s) 359, 410
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 2 cut(s) 11, 443
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 1 cut(s) 943
RruI TCGCGA 1 cut(s) 245
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
RseI CAYNNNNRTG 1 cut(s) 734
SacI GAGCTC 2 cut(s) 359, 410
SaqAI TTAA 4 cut(s) 44, 414, 939, 998
SatI GCNGC 4 cut(s) 172, 333, 380, 383
Sau3AI GATC 5 cut(s) 345, 628, 655, 843, 943
Sau96I GGNCC 2 cut(s) 11, 443
SchI GAGTC 3 cut(s) 227, 260, 575
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 3 cut(s) 76, 359, 410
SetI ASST 9 cut(s) 35, 359, 410, 457, 545, 672, 705, 772, 796
SfaNI GCATC 1 cut(s) 29
SfcI CTRYAG 2 cut(s) 60, 906
SfuI TTCGAA 1 cut(s) 488
SinI GGWCC 2 cut(s) 11, 443
SmiMI CAYNNNNRTG 1 cut(s) 734
SsiI CCGC 6 cut(s) 77, 140, 171, 332, 420, 434
SstI GAGCTC 2 cut(s) 359, 410
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 3 cut(s) 61, 191, 957
TaiI ACGT 1 cut(s) 457
TaqI TCGA 7 cut(s) 284, 488, 587, 811, 918, 1019, 1031
TauI GCSGC 2 cut(s) 174, 335
TfiI GAWTC 8 cut(s) 89, 176, 240, 272, 558, 761, 1021, 1033
Tru1I TTAA 4 cut(s) 44, 414, 939, 998
Tru9I TTAA 4 cut(s) 44, 414, 939, 998
TscAI CASTG 5 cut(s) 64, 76, 342, 853, 910
TseFI GTSAC 2 cut(s) 316, 1043
TseI GCWGC 2 cut(s) 379, 382
Tsp45I GTSAC 2 cut(s) 316, 1043
TspDTI ATGAA 3 cut(s) 73, 473, 674
TspGWI ACGGA 5 cut(s) 301, 341, 570, 678, 856
TspRI CASTG 5 cut(s) 64, 76, 342, 853, 910
VneI GTGCAC 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 11, 443
VspI ATTAAT 1 cut(s) 44
XapI RAATTY 4 cut(s) 51, 296, 490, 589
XceI RCATGY 2 cut(s) 916, 1006
XcmI CCANNNNNNNNNTGG 3 cut(s) 110, 570, 632
XmnI GAANNNNTTC 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.