Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Reverse (-)

6692624 .. 6695634

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1063300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGATTCAAATACCCACCAACCCAATTCTGGGATGCTCAGATTTCGCTCCGCCCCGAGCTCCCTCCTCGCCAATTTGGCCGACGGCGGCGATTCGGGCCTTCACAGTAAAAACCCAGTTGAGGGTTCTTTGGAGTCCGAGAGATTGTTCTCCAGATTCGCGAATTACAGCCATACCAACGACTCGGATTCTTGGCCGTCGAGTTTTCAAGAATTAGACGATAAATCCGTGGTGACGGTGACGAAGGCGGCTGTGCCGGCGAGCCGGGTGAGTTCACAGGGAGGGTATTCAGGGATGCTGCCACCTCATTATCCGAGGCAGAGCTCGTTTAATGGCGGATATGGGTTGGCGGGTTCGGGTGCAATGGAGCATCATCACACTGCGGCCAACAAGTCACTTCATTCAACTTCAAATCTTGTCAGACAAAGTAGCTCCCCAGCCGGCCTTTTCTCCAACACCTCTGTTCAAAACGGTTTCCCAATCGGAAATTGGAACGACTCATCAAATTTTCCAGAGAATTTAGGTGGCATGAAAAGTGACCAAGATCATGATGGGAAATTATTTTCTGTTGATCAGAGCGGAGAGCTTGAAAACCGGATTCATGTATTATCCCATCACCTGAGTTTACCAAAAACTTCAGCAGAAATGGCCATGGAAAAGTTCTTGCAACTTCAAGATTCTGTACCTTGCAAAGTTAGAGCAAAGCGAGGTTGTGCCACTCATCCTCGAAGCATTGCCGAAAGAGTGAGAAGAACACGGATCAGTGAACGAATGAGGAAACTACAAGAACTTGTCCCGAACATGGACAAGCAAACCAACACGGCAGACATGCTAGATTTGGCGGTTGATTATATTAAGGATCTTCAGAAACAGTTCAAGACACTTAGCGATGTTCGAGCAAACTGCAAGTGTTTAAACATGCAGAAGCAGGTTTCGAATCGGACCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

317

Amino Acids

34.76

Weight (kDa)

8.83

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	244 - 289	5.3e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	919
AccBSI	CCGCTC	1 cut(s)	579
AccII	CGCG	1 cut(s)	161
AciI	CCGC	8 cut(s)	51, 87, 248, 336, 350, 383, 579, 842
AclWI	GGATC	2 cut(s)	767, 867
AcoI	YGGCCR	4 cut(s)	78, 194, 384, 648
AcsI	RAATTY	2 cut(s)	505, 517
AcuI	CTGAAG	2 cut(s)	621, 848
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	5 cut(s)	29, 30, 121, 122, 802
AgsI	TTSAA	8 cut(s)	9, 209, 405, 411, 467, 590, 674, 877
AluBI	AGCT	4 cut(s)	60, 324, 432, 586
AluI	AGCT	4 cut(s)	60, 324, 432, 586
Alw21I	GWGCWC	2 cut(s)	62, 326
AlwI	GGATC	2 cut(s)	767, 867
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	6 cut(s)	78, 97, 194, 384, 442, 648
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	2 cut(s)	505, 517
Asp700I	GAANNNNTTC	1 cut(s)	872
AspS9I	GGNCC	2 cut(s)	97, 942
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	4 cut(s)	244, 250, 280, 608
AsuII	TTCGAA	1 cut(s)	935
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	942
BalI	TGGCCA	1 cut(s)	650
BanII	GRGCYC	2 cut(s)	62, 326
Bbv12I	GWGCWC	2 cut(s)	62, 326
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	2 cut(s)	545, 621
BceAI	ACGGC	3 cut(s)	100, 181, 837
BcgI	CGANNNNNNTGC	2 cut(s)	885, 919
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	833
BfuAI	ACCTGC	1 cut(s)	919
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	88, 249, 299, 384
BlsI	GCNGC	4 cut(s)	89, 250, 300, 385
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	942
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	97, 942
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	3 cut(s)	24, 285, 379
BmuI	ACTGGG	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	935
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	228, 314, 651
BsaWI	WCCGGW	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 30, 121, 122, 802
Bse118I	RCCGGY	2 cut(s)	256, 440
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	2 cut(s)	369, 732
BseDI	CCNNGG	3 cut(s)	228, 314, 651
BseGI	GGATG	3 cut(s)	39, 300, 721
BseLI	CCNNNNNNNGG	5 cut(s)	29, 30, 121, 122, 802
BseMI	GCAATG	2 cut(s)	369, 732
BseMII	CTCAG	2 cut(s)	52, 611
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	285
BseYI	CCCAGC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	6 cut(s)	80, 99, 196, 386, 444, 650
BsiHKAI	GWGCWC	2 cut(s)	62, 326
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	4 cut(s)	257, 265, 441, 595
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	5 cut(s)	29, 30, 121, 122, 802
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	6 cut(s)	80, 99, 196, 386, 444, 650
BsoBI	CYCGRG	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	935
Bsp1286I	GDGCHC	2 cut(s)	62, 326
Bsp143I	GATC	4 cut(s)	544, 571, 759, 859
Bsp19I	CCATGG	1 cut(s)	651
Bsp68I	TCGCGA	1 cut(s)	161
BspACI	CCGC	8 cut(s)	51, 87, 248, 336, 350, 383, 579, 842
BspANI	GGCC	6 cut(s)	80, 99, 196, 386, 444, 650
BspCNI	CTCAG	2 cut(s)	51, 612
BspFNI	CGCG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	919
BspPI	GGATC	2 cut(s)	767, 867
BspT104I	TTCGAA	1 cut(s)	935
BsrBI	CCGCTC	1 cut(s)	579
BsrDI	GCAATG	2 cut(s)	369, 732
BsrFI	RCCGGY	2 cut(s)	256, 440
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	2 cut(s)	256, 440
BssECI	CCNNGG	3 cut(s)	228, 314, 651
BssMI	GATC	4 cut(s)	544, 571, 759, 859
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	5 cut(s)	107, 238, 473, 873, 946
BstBI	TTCGAA	1 cut(s)	935
BstC8I	GCNNGC	3 cut(s)	258, 262, 442
BstDEI	CTNAG	3 cut(s)	38, 620, 884
BstDSI	CCRYGG	2 cut(s)	228, 651
BstF5I	GGATG	3 cut(s)	39, 300, 721
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	4 cut(s)	547, 574, 762, 862
BstMBI	GATC	4 cut(s)	544, 571, 759, 859
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 96, 257, 647
BstNSI	RCATGY	2 cut(s)	832, 922
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	6 cut(s)	80, 99, 196, 386, 444, 650
BtgI	CCRYGG	2 cut(s)	228, 651
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	3 cut(s)	39, 300, 721
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 769
BtuMI	TCGCGA	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	3 cut(s)	258, 262, 442
CciI	TCATGA	1 cut(s)	547
Cfr10I	RCCGGY	2 cut(s)	256, 440
Cfr13I	GGNCC	2 cut(s)	97, 942
CpoI	CGGWCCG	1 cut(s)	942
Csp6I	GTAC	1 cut(s)	683
CspI	CGGWCCG	1 cut(s)	942
CviAII	CATG	7 cut(s)	529, 548, 602, 652, 802, 829, 919
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	3 cut(s)	38, 620, 884
DpnI	GATC	4 cut(s)	546, 573, 761, 861
DpnII	GATC	4 cut(s)	544, 571, 759, 859
DraI	TTTAAA	1 cut(s)	915
EaeI	YGGCCR	4 cut(s)	78, 194, 384, 648
EciI	GGCGGA	2 cut(s)	40, 351
Ecl136II	GAGCTC	2 cut(s)	60, 324
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	62, 326
Eco47I	GGWCC	1 cut(s)	942
Eco53kI	GAGCTC	2 cut(s)	60, 324
Eco57I	CTGAAG	2 cut(s)	621, 848
Eco88I	CYCGRG	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	60, 324
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	62, 326
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	7 cut(s)	532, 551, 605, 655, 805, 832, 922
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	7 cut(s)	528, 547, 601, 651, 801, 828, 918
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	4 cut(s)	88, 249, 299, 384
FokI	GGATG	3 cut(s)	46, 307, 708
FriOI	GRGCYC	2 cut(s)	62, 326
Fsp4HI	GCNGC	4 cut(s)	88, 249, 299, 384
FspBI	CTAG	1 cut(s)	833
GluI	GCNGC	4 cut(s)	88, 249, 299, 384
GsaI	CCCAGC	1 cut(s)	440
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	6 cut(s)	80, 99, 196, 386, 444, 650
HapII	CCGG	4 cut(s)	257, 265, 441, 595
Hin1II	CATG	7 cut(s)	532, 551, 605, 655, 805, 832, 922
HpaII	CCGG	4 cut(s)	257, 265, 441, 595
HphI	GGTGA	4 cut(s)	244, 250, 280, 608
Hpy166II	GTNNAC	3 cut(s)	275, 626, 767
Hpy188I	TCNGA	9 cut(s)	41, 139, 187, 315, 422, 485, 576, 867, 942
Hpy188III	TCNNGA	8 cut(s)	153, 160, 209, 512, 548, 674, 796, 877
Hpy8I	GTNNAC	3 cut(s)	275, 626, 767
Hpy99I	CGWCG	2 cut(s)	86, 202
HpyAV	CCTTC	2 cut(s)	110, 238
HpyCH4III	ACNGT	5 cut(s)	107, 238, 473, 873, 946
HpyCH4V	TGCA	5 cut(s)	362, 667, 690, 906, 922
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 96, 257, 647
HpyF3I	CTNAG	3 cut(s)	38, 620, 884
Hsp92II	CATG	7 cut(s)	532, 551, 605, 655, 805, 832, 922
KroI	GCCGGC	2 cut(s)	256, 440
KroNI	GCCGGC	2 cut(s)	258, 442
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	544, 571, 759, 859
LmnI	GCTCC	4 cut(s)	53, 65, 367, 437
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	3 cut(s)	24, 285, 379
MaeI	CTAG	1 cut(s)	833
MaeIII	GTNAC	4 cut(s)	232, 238, 393, 536
MalI	GATC	4 cut(s)	546, 573, 761, 861
MbiI	CCGCTC	1 cut(s)	579
MboI	GATC	4 cut(s)	544, 571, 759, 859
MboII	GAAGA	2 cut(s)	762, 854
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	2 cut(s)	62, 326
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	8 cut(s)	25, 73, 163, 212, 487, 505, 517, 557
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	3 cut(s)	143, 176, 491
MmeI	TCCRAC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	650
MroNI	GCCGGC	2 cut(s)	256, 440
MroXI	GAANNNNTTC	1 cut(s)	872
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	3 cut(s)	330, 855, 914
Msp20I	TGGCCA	1 cut(s)	650
MspI	CCGG	4 cut(s)	257, 265, 441, 595
MspR9I	CCNGG	1 cut(s)	266
MssI	GTTTAAAC	1 cut(s)	915
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	4 cut(s)	77, 96, 257, 647
NaeI	GCCGGC	2 cut(s)	258, 442
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	4 cut(s)	544, 571, 759, 859
NgoMIV	GCCGGC	2 cut(s)	256, 440
NlaIII	CATG	7 cut(s)	532, 551, 605, 655, 805, 832, 922
NmuCI	GTSAC	4 cut(s)	232, 238, 393, 536
NruI	TCGCGA	1 cut(s)	161
NspI	RCATGY	2 cut(s)	832, 922
NspV	TTCGAA	1 cut(s)	935
PagI	TCATGA	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	2 cut(s)	258, 442
PdmI	GAANNNNTTC	1 cut(s)	872
PfeI	GAWTC	7 cut(s)	5, 92, 156, 188, 598, 677, 937
PkrI	GCNGC	4 cut(s)	89, 250, 300, 385
PleI	GAGTC	3 cut(s)	142, 176, 491
PmeI	GTTTAAAC	1 cut(s)	915
PpsI	GAGTC	3 cut(s)	142, 176, 491
Psp124BI	GAGCTC	2 cut(s)	62, 326
PspFI	CCCAGC	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	97, 942
PsuI	RGATCY	1 cut(s)	859
RruI	TCGCGA	1 cut(s)	161
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
Rsr2I	CGGWCCG	1 cut(s)	942
RsrII	CGGWCCG	1 cut(s)	942
SacI	GAGCTC	2 cut(s)	62, 326
SaqAI	TTAA	3 cut(s)	330, 855, 914
SatI	GCNGC	4 cut(s)	88, 249, 299, 384
Sau3AI	GATC	4 cut(s)	544, 571, 759, 859
Sau96I	GGNCC	2 cut(s)	97, 942
SchI	GAGTC	3 cut(s)	143, 176, 491
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	62, 326
SfaNI	GCATC	3 cut(s)	24, 285, 379
SfuI	TTCGAA	1 cut(s)	935
SinI	GGWCC	1 cut(s)	942
Sse9I	AATT	8 cut(s)	25, 73, 163, 212, 487, 505, 517, 557
SsiI	CCGC	8 cut(s)	51, 87, 248, 336, 350, 383, 579, 842
SspMI	CTAG	1 cut(s)	833
SstI	GAGCTC	2 cut(s)	62, 326
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	5 cut(s)	107, 238, 473, 873, 946
TaqI	TCGA	4 cut(s)	200, 727, 895, 935
TasI	AATT	8 cut(s)	25, 73, 163, 212, 487, 505, 517, 557
TauI	GCSGC	3 cut(s)	90, 251, 386
TfiI	GAWTC	7 cut(s)	5, 92, 156, 188, 598, 677, 937
Tru1I	TTAA	3 cut(s)	330, 855, 914
Tru9I	TTAA	3 cut(s)	330, 855, 914
TscAI	CASTG	2 cut(s)	385, 769
TseFI	GTSAC	4 cut(s)	232, 238, 393, 536
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	4 cut(s)	232, 238, 393, 536
TspDTI	ATGAA	3 cut(s)	389, 545, 590
TspGWI	ACGGA	2 cut(s)	217, 772
TspRI	CASTG	2 cut(s)	385, 769
VpaK11BI	GGWCC	1 cut(s)	942
XapI	RAATTY	2 cut(s)	505, 517
XceI	RCATGY	2 cut(s)	832, 922
XcmI	CCANNNNNNNNNTGG	3 cut(s)	26, 486, 548
XmnI	GAANNNNTTC	1 cut(s)	872
XspI	CTAG	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.