Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16611575 .. 16614864

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATTCAAATACCCATCTCAATCTGGAGCACCAACCCCACCAACCCAACTCTGGGTTGCTCCGGTTTCGCTCTGCTCCCAGCTCACTCTTCGCCGAGAACAACGCCGCCGATTTGGGCGTCAATAAGGGAGCTTCCATCGAGGGTTCTGACTCTGACAGACTGTTCTCGAGATTCGTGGGTTATAGTCATACCAACGACTCGGAATCGTGGCCGTCGAGCTTCCAGGAGTTTGAGGACAAATCTACGGTGACGGAGGCGGCTGTGACGGCGAGTCGTATCAGCTCACAGCAACAGGGGTTTGCTGGTCTTCCGCCTCATTATCCGAGACAGAACTCGTTTGGGAGTGGTAATGGTTCTTATGGGTTGGTGGGTTCGGCCGCAGTGGATCAACACCCGCAAACCAAGACCGTTACTTCCAATCTTGTTCGGCAGAGTAGTTCTCCTGCTGGGCTTTTCTCCAACAACTCTATTCAAAATGGATTCCCATTTGGAGCCTGGAATGATCCATCAAATTTTGCTGAGAATTTAGATGGCATGAGAAGAGACCAAGATACTGACCAGAAGTTATTCTCTGCTCCTCAGAATGGTGATCTTGGGAACCGAGTTCATATATTATCCCACCACTTGAGTTTACCAAAAAATTCAGCAGAAGTTGCCATGGAAAAGTTCCTCCAACTCCAAGATTCTGTACCTTGCAAAGTTAGAGCAAAGCGAGGTTGTGCCACTCATCCCCGAAGCATTGCAGAAAGAGTGAGAAGAACACGGATTAGTGAACGGATGAGGAAACTACAAGAGCTTGTGCCAAACATGGACAAGCAAACAAATACGGCAGACATGTTAGACTTGGCTGTTGATTATATTAAAGAACTTCAGAAACAGTTCAAGAGTCTGAGCGATGTTCGAGCCAACTGCAAGTGTTTGAGTATGCAGAAGCCGGTTCAAAATCAGATAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

320

Amino Acids

35.28

Weight (kDa)

8.32

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	247 - 292	5.2e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42280 AT2G42280 AT2G42280
fragaria_vesca	FvH4_6g22880 FvH4_6g22880
malus_domestica	MD12G1062600.v1.1 MD14G1063300.v1.1
prunus_persica	Prupe.7G071500_v2.0.a1
pyrus_communis	pycom12g05530 pycom14g05110
rosa_chinensis	RchiOBHm_Chr3g0480621
rosa_laevigata	RLG00000023464
rosa_multiflora	Rmu_sc0002752.1_g000005
rosa_roxburghii	Rroxscaffold_6G00401200
rosa_rugosa	Rorug03G0184300 Rorug03G0184400
rosa_samantha	Rh3AG236500 Rh3BG269400 Rh3CG266100 Rh3DG261900
rosa_wichuraiana	Rw3G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	108, 260, 314, 381, 398
AclWI	GGATC	2 cut(s)	396, 500
AcoI	YGGCCR	2 cut(s)	212, 378
AcsI	RAATTY	3 cut(s)	514, 526, 643
AcuI	CTGAAG	1 cut(s)	857
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	3 cut(s)	53, 54, 587
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	4 cut(s)	9, 476, 886, 944
AhdI	GACNNNNNGTC	1 cut(s)	273
AjnI	CCWGG	2 cut(s)	225, 497
AluBI	AGCT	5 cut(s)	84, 134, 222, 285, 799
AluI	AGCT	5 cut(s)	84, 134, 222, 285, 799
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	322, 540
AlwI	GGATC	2 cut(s)	396, 500
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	212, 378
ApoI	RAATTY	3 cut(s)	514, 526, 643
Asp700I	GAANNNNTTC	2 cut(s)	569, 881
AsuHPI	GGTGA	2 cut(s)	262, 602
AvaI	CYCGRG	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	4 cut(s)	24, 146, 517, 527
BceAI	ACGGC	3 cut(s)	199, 285, 846
BcgI	CGANNNNNNTGC	2 cut(s)	894, 928
BciT130I	CCWGG	2 cut(s)	227, 499
BcoDI	GTCTC	2 cut(s)	322, 540
BisI	GCNGC	3 cut(s)	108, 261, 381
BlsI	GCNGC	3 cut(s)	109, 262, 382
Bme1390I	CCNGG	2 cut(s)	227, 499
BmeRI	GACNNNNNGTC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	496, 602
BmrFI	CCNGG	2 cut(s)	227, 499
BpiI	GAAGAC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	649
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 54, 587
Bse118I	RCCGGY	1 cut(s)	937
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	227, 499
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	730, 786
BseLI	CCNNNNNNNGG	3 cut(s)	53, 54, 587
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	3 cut(s)	513, 596, 884
BseRI	GAGGAG	1 cut(s)	570
BseX3I	CGGCCG	1 cut(s)	378
BseYI	CCCAGC	2 cut(s)	80, 449
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	214, 380
BsiEI	CGRYCG	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	64, 938
BslI	CCNNNNNNNGG	3 cut(s)	53, 54, 587
BsmAI	GTCTC	2 cut(s)	322, 540
BsnI	GGCC	2 cut(s)	214, 380
Bso31I	GGTCTC	1 cut(s)	540
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	388, 505, 592
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	5 cut(s)	108, 260, 314, 381, 398
BspANI	GGCC	2 cut(s)	214, 380
BspCNI	CTCAG	3 cut(s)	514, 595, 885
BspLI	GGNNCC	2 cut(s)	496, 602
BspPI	GGATC	2 cut(s)	396, 500
BspTNI	GGTCTC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	937
BssAI	RCCGGY	1 cut(s)	937
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	3 cut(s)	388, 505, 592
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	227, 499
Bst4CI	ACNGT	4 cut(s)	165, 250, 412, 882
Bst6I	CTCTTC	2 cut(s)	95, 538
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	522, 582, 893
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	730, 786
BstKTI	GATC	3 cut(s)	391, 508, 595
BstMAI	GTCTC	2 cut(s)	322, 540
BstMBI	GATC	3 cut(s)	388, 505, 592
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 656
BstNI	CCWGG	2 cut(s)	227, 499
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	2 cut(s)	225, 497
BstV2I	GAAGAC	1 cut(s)	302
BstZI	CGGCCG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	214, 380
BtgI	CCRYGG	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	912
BtsCI	GGATG	2 cut(s)	730, 786
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	937
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	4 cut(s)	538, 661, 811, 838
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	3 cut(s)	522, 582, 893
DpnI	GATC	3 cut(s)	390, 507, 594
DpnII	GATC	3 cut(s)	388, 505, 592
DriI	GACNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	2 cut(s)	212, 378
EagI	CGGCCG	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	95, 538
Eam1105I	GACNNNNNGTC	1 cut(s)	273
EarI	CTCTTC	2 cut(s)	95, 538
EciI	GGCGGA	1 cut(s)	303
EclXI	CGGCCG	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	540
Eco52I	CGGCCG	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	225, 497
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	4 cut(s)	541, 664, 814, 841
FatI	CATG	4 cut(s)	537, 660, 810, 837
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	108, 261, 381
FokI	GGATG	2 cut(s)	717, 793
Fsp4HI	GCNGC	3 cut(s)	108, 261, 381
GluI	GCNGC	3 cut(s)	108, 261, 381
GsaI	CCCAGC	2 cut(s)	84, 453
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	214, 380
HapII	CCGG	2 cut(s)	64, 938
HgaI	GACGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	541, 664, 814, 841
HinfI	GANTC	9 cut(s)	5, 152, 174, 200, 206, 274, 483, 686, 889
HpaII	CCGG	2 cut(s)	64, 938
HphI	GGTGA	2 cut(s)	262, 602
Hpy166II	GTNNAC	2 cut(s)	635, 776
Hpy188I	TCNGA	8 cut(s)	151, 157, 205, 327, 585, 876, 894, 951
Hpy188III	TCNNGA	4 cut(s)	26, 169, 171, 886
Hpy8I	GTNNAC	2 cut(s)	635, 776
Hpy99I	CGWCG	1 cut(s)	220
HpyCH4III	ACNGT	4 cut(s)	165, 250, 412, 882
HpyCH4V	TGCA	4 cut(s)	699, 746, 915, 931
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 656
HpyF3I	CTNAG	3 cut(s)	522, 582, 893
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	541, 664, 814, 841
Kzo9I	GATC	3 cut(s)	388, 505, 592
LmnI	GCTCC	6 cut(s)	28, 66, 82, 131, 494, 583
MaeIII	GTNAC	3 cut(s)	250, 265, 412
MalI	GATC	3 cut(s)	390, 507, 594
MboI	GATC	3 cut(s)	388, 505, 592
MboII	GAAGA	4 cut(s)	82, 302, 555, 771
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	3 cut(s)	514, 526, 643
MlyI	GAGTC	4 cut(s)	146, 194, 283, 898
MmeI	TCCRAC	2 cut(s)	486, 700
MnlI	CCTC	8 cut(s)	136, 229, 250, 327, 591, 683, 710, 777
MroXI	GAANNNNTTC	2 cut(s)	569, 881
MseI	TTAA	1 cut(s)	864
MspI	CCGG	2 cut(s)	64, 938
MspR9I	CCNGG	2 cut(s)	227, 499
MvaI	CCWGG	2 cut(s)	227, 499
MwoI	GCNNNNNNNGC	2 cut(s)	269, 656
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	3 cut(s)	388, 505, 592
NlaIII	CATG	4 cut(s)	541, 664, 814, 841
NlaIV	GGNNCC	2 cut(s)	496, 602
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	250, 265
NspI	RCATGY	1 cut(s)	841
PaeR7I	CTCGAG	1 cut(s)	169
PciI	ACATGT	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PdmI	GAANNNNTTC	2 cut(s)	569, 881
PfeI	GAWTC	5 cut(s)	5, 174, 206, 483, 686
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	109, 262, 382
PleI	GAGTC	4 cut(s)	146, 194, 282, 897
PpsI	GAGTC	4 cut(s)	146, 194, 282, 897
PscI	ACATGT	1 cut(s)	837
Psp6I	CCWGG	2 cut(s)	225, 497
PspFI	CCCAGC	2 cut(s)	80, 449
PspGI	CCWGG	2 cut(s)	225, 497
PspN4I	GGNNCC	2 cut(s)	496, 602
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	3 cut(s)	108, 261, 381
Sau3AI	GATC	3 cut(s)	388, 505, 592
SchI	GAGTC	4 cut(s)	146, 194, 283, 898
ScrFI	CCNGG	2 cut(s)	227, 499
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	7 cut(s)	86, 136, 224, 287, 697, 721, 801
Sfr274I	CTCGAG	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	169, 628
SmoI	CTYRAG	2 cut(s)	169, 628
Sse9I	AATT	3 cut(s)	514, 526, 643
SsiI	CCGC	5 cut(s)	108, 260, 314, 381, 398
StyD4I	CCNGG	2 cut(s)	225, 497
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	4 cut(s)	165, 250, 412, 882
TaqI	TCGA	4 cut(s)	141, 170, 218, 904
TasI	AATT	3 cut(s)	514, 526, 643
TauI	GCSGC	3 cut(s)	110, 263, 383
TfiI	GAWTC	5 cut(s)	5, 174, 206, 483, 686
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	250, 265
Tsp45I	GTSAC	2 cut(s)	250, 265
TspDTI	ATGAA	1 cut(s)	599
TspGWI	ACGGA	3 cut(s)	269, 781, 793
TspRI	CASTG	1 cut(s)	390
XapI	RAATTY	3 cut(s)	514, 526, 643
XceI	RCATGY	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	2 cut(s)	50, 495
XhoI	CTCGAG	1 cut(s)	169
XmnI	GAANNNNTTC	2 cut(s)	569, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.