Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004976

Physical Location & Seq

Genomic Coordinates Forward (+)

17620895 .. 17624854

Gene Structure 3960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATCTGACCCAAGGTTTCAGAGCTAGATCCGGCGTTGTTGGGCCGGTGGCCGGACTAGAATCTCTCAATTTCAGCGACGAATTTCGGCACTTAGTGACGACGATGCCTCCGGAGACTACTGGCGGCTCCTTCACGGCTTTACTCGAGATGCCTGTGACTCAGGCCATGGAGCTTCTCCATTTCCCAGATTCATCGTCTTCTCAGGCCAGAACCGTTACCAGTGGTGATATTTCTCCTACCACTCTTCACCCTTTCGGGGCTTTGACTTTTCCTTCTAACTCGCTTCTCTTGGACCGCGCCGCTCGTTTCTCGGTGATTGCTACAGAGCAAAACGGTAATTTTTCCGGCGAGACTGCTAACTCTTTACCTTCTAATCCCGGCGCGAATCTGGACAGAGTCAAAGCCGAGCCTGCTGAGACCGATTCAATGGTGGAGAATCAGAACCAGAGCTACTCTTCTGGAAAAAGGAAAGAACGCGAGAAGAAGGTCAAAAGCTCGACGAAGAAGAACAAGAGCTCCGTGGAGTCAGACAAGTTGCCATATGTTCATGTCAGAGCTCGTCGTGGTCAAGCTACTGATAACCATAGCTTAGCAGAGAGAGCAAGAAGGGAGAAGATAAACGCACGAATGAAGCTGCTACAGGAACTGGTCCCAGGCTGTGATAAGATTCAGGGCACTGCATTGGTTCTGGATGAAATCATTAACCATGTGCAAACTTTACAGCGTCAAGTGGAGATGCTATCTATGAGACTTGCTGCAGTAAACCCCAGAATCGACTTCAATCTAGACAGCATACTGGCTTCAGAGAACGGCTCTCTTATGGATGGTAGCTTCAATGCAGAGTCTTATCATCAGCTGCAACAATGGCCTTTCGACGGCTACCACCAGCCGGAATGGGGAAGAGAAGAAGATCATCATCAAGCCAATTTCTCAATGGGTTCAGCTACTTTACACCCAAATCAGGTGAAAATGGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

327

Amino Acids

36.19

Weight (kDa)

6.01

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT3G57800 AT3G57800
fragaria_vesca	FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930
malus_domestica	MD12G1063900.v1.1 MD12G1064000.v1.1 MD14G1064200.v1.1
prunus_persica	Prupe.7G070200_v2.0.a1
pyrus_communis	pycom12g05580 pycom14g05190
rosa_chinensis	RchiOBHm_Chr3g0480751
rosa_laevigata	RLG00000023457
rosa_multiflora	Rmu_sc0003902.1_g000017
rosa_roxburghii	Rroxscaffold_6G00401100
rosa_rugosa	Rorug03G0185300 Rorug03G0185300
rosa_samantha	Rh3AG237400 Rh3BG270900 Rh3CG267000 Rh3CG267100 Rh3DG263000
rosa_wichuraiana	Rw3G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	3 cut(s)	300, 386, 480
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	3 cut(s)	126, 298, 303
AclWI	GGATC	2 cut(s)	12, 24
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	789
AdeI	CACNNNGTG	1 cut(s)	97
AfiI	CCNNNNNNNGG	6 cut(s)	53, 259, 878, 892, 899, 964
AgsI	TTSAA	3 cut(s)	429, 784, 838
AjnI	CCWGG	1 cut(s)	655
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
Alw21I	GWGCWC	3 cut(s)	521, 562, 981
Alw26I	GTCTC	4 cut(s)	110, 347, 413, 745
AlwI	GGATC	2 cut(s)	12, 24
AlwNI	CAGNNNCTG	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	5 cut(s)	44, 51, 165, 207, 869
ApeKI	GCWGC	3 cut(s)	637, 758, 859
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	302, 386
AspS9I	GGNCC	3 cut(s)	44, 295, 652
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	4 cut(s)	239, 242, 328, 979
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	295, 652
BaeGI	GKGCMC	1 cut(s)	680
BanII	GRGCYC	3 cut(s)	521, 562, 981
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	3 cut(s)	521, 562, 981
BbvI	GCAGC	3 cut(s)	624, 745, 846
BccI	CCATC	1 cut(s)	821
BceAI	ACGGC	3 cut(s)	153, 829, 895
BciT130I	CCWGG	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	4 cut(s)	110, 347, 413, 745
BfaI	CTAG	3 cut(s)	27, 59, 788
BfmI	CTRYAG	3 cut(s)	324, 641, 759
BisI	GCNGC	5 cut(s)	127, 303, 638, 759, 860
BlpI	GCTNAGC	1 cut(s)	592
BlsI	GCNGC	5 cut(s)	128, 304, 639, 760, 861
Bme1390I	CCNGG	2 cut(s)	381, 657
Bme18I	GGWCC	2 cut(s)	295, 652
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	44, 295, 652
BmiI	GGNNCC	2 cut(s)	130, 654
BmrFI	CCNGG	2 cut(s)	381, 657
BmsI	GCATC	3 cut(s)	96, 141, 729
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
Bpu1102I	GCTNAGC	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	918
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	4 cut(s)	13, 168, 522, 655
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 503, 533
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 259, 878, 892, 899, 964
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	4 cut(s)	127, 222, 654, 804
Bse8I	GATNNNNATC	1 cut(s)	918
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	13, 168, 522, 655
BseGI	GGATG	2 cut(s)	700, 832
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	6 cut(s)	53, 259, 878, 892, 899, 964
BseMII	CTCAG	3 cut(s)	176, 218, 408
BseNI	ACTGG	4 cut(s)	127, 222, 654, 804
BseSI	GKGCMC	1 cut(s)	680
BseXI	GCAGC	3 cut(s)	624, 745, 846
Bsh1236I	CGCG	3 cut(s)	300, 386, 480
BshFI	GGCC	5 cut(s)	46, 53, 167, 209, 871
BsiHKAI	GWGCWC	3 cut(s)	521, 562, 981
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	7 cut(s)	33, 47, 54, 113, 348, 381, 893
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	6 cut(s)	53, 259, 878, 892, 899, 964
BsmAI	GTCTC	4 cut(s)	110, 347, 413, 745
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	5 cut(s)	46, 53, 167, 209, 871
Bso31I	GGTCTC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	4 cut(s)	521, 562, 680, 981
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	4, 29, 913
Bsp1720I	GCTNAGC	1 cut(s)	592
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	3 cut(s)	126, 298, 303
BspANI	GGCC	5 cut(s)	46, 53, 167, 209, 871
BspCNI	CTCAG	3 cut(s)	175, 217, 409
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	3 cut(s)	300, 386, 480
BspLI	GGNNCC	2 cut(s)	130, 654
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	2 cut(s)	12, 24
BspTNI	GGTCTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	127, 222, 654, 804
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	4 cut(s)	13, 168, 522, 655
BssMI	GATC	3 cut(s)	4, 29, 913
BssT1I	CCWWGG	2 cut(s)	13, 168
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	2 cut(s)	217, 338
Bst6I	CTCTTC	3 cut(s)	252, 463, 898
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	5 cut(s)	94, 162, 204, 417, 592
BstDSI	CCRYGG	2 cut(s)	168, 522
BstF5I	GGATG	2 cut(s)	700, 832
BstFNI	CGCG	3 cut(s)	300, 386, 480
BstHHI	GCGC	2 cut(s)	302, 386
BstKTI	GATC	3 cut(s)	7, 32, 916
BstMAI	GTCTC	4 cut(s)	110, 347, 413, 745
BstMBI	GATC	3 cut(s)	4, 29, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 602, 868
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	379, 655
BstSFI	CTRYAG	3 cut(s)	324, 641, 759
BstSLI	GKGCMC	1 cut(s)	680
BstUI	CGCG	3 cut(s)	300, 386, 480
BstV1I	GCAGC	3 cut(s)	624, 745, 846
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	4, 29
BstYI	RGATCY	2 cut(s)	4, 29
BsuRI	GGCC	5 cut(s)	46, 53, 167, 209, 871
BtgI	CCRYGG	2 cut(s)	168, 522
BtsCI	GGATG	2 cut(s)	700, 832
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	229, 678
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	2 cut(s)	302, 386
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	44, 295, 652
CseI	GACGC	1 cut(s)	716
CviAII	CATG	3 cut(s)	169, 551, 710
DdeI	CTNAG	5 cut(s)	94, 162, 204, 417, 592
DpnI	GATC	3 cut(s)	6, 31, 915
DpnII	GATC	3 cut(s)	4, 29, 913
DraIII	CACNNNGTG	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	3 cut(s)	252, 463, 898
EarI	CTCTTC	3 cut(s)	252, 463, 898
Ecl136II	GAGCTC	3 cut(s)	519, 560, 979
Eco130I	CCWWGG	2 cut(s)	13, 168
Eco24I	GRGCYC	3 cut(s)	521, 562, 981
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	295, 652
Eco53kI	GAGCTC	3 cut(s)	519, 560, 979
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	3 cut(s)	519, 560, 979
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	2 cut(s)	13, 168
EcoT38I	GRGCYC	3 cut(s)	521, 562, 981
ErhI	CCWWGG	2 cut(s)	13, 168
FaeI	CATG	3 cut(s)	172, 554, 713
FaiI	YATR	9 cut(s)	170, 544, 546, 552, 588, 711, 749, 797, 824
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	3 cut(s)	168, 550, 709
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	5 cut(s)	127, 303, 638, 759, 860
FokI	GGATG	2 cut(s)	707, 839
FriOI	GRGCYC	3 cut(s)	521, 562, 981
Fsp4HI	GCNGC	5 cut(s)	127, 303, 638, 759, 860
FspBI	CTAG	3 cut(s)	27, 59, 788
GlaI	GCGC	2 cut(s)	301, 385
GluI	GCNGC	5 cut(s)	127, 303, 638, 759, 860
HaeIII	GGCC	5 cut(s)	46, 53, 167, 209, 871
HapII	CCGG	7 cut(s)	33, 47, 54, 113, 348, 381, 893
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	2 cut(s)	302, 386
Hin1II	CATG	3 cut(s)	172, 554, 713
Hin6I	GCGC	2 cut(s)	300, 384
HinP1I	GCGC	2 cut(s)	300, 384
HpaII	CCGG	7 cut(s)	33, 47, 54, 113, 348, 381, 893
HphI	GGTGA	4 cut(s)	239, 242, 328, 979
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	6 cut(s)	9, 23, 444, 532, 557, 808
Hpy188III	TCNNGA	6 cut(s)	113, 148, 392, 462, 692, 788
Hpy8I	GTNNAC	1 cut(s)	766
Hpy99I	CGWCG	5 cut(s)	83, 106, 505, 567, 881
HpyAV	CCTTC	5 cut(s)	142, 285, 381, 481, 603
HpyCH4III	ACNGT	2 cut(s)	217, 338
HpyCH4V	TGCA	5 cut(s)	683, 715, 761, 842, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 602, 868
HpyF3I	CTNAG	5 cut(s)	94, 162, 204, 417, 592
Hsp92II	CATG	3 cut(s)	172, 554, 713
HspAI	GCGC	2 cut(s)	300, 384
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	4, 29, 913
LmnI	GCTCC	4 cut(s)	134, 172, 524, 976
Lsp1109I	GCAGC	3 cut(s)	624, 745, 846
LweI	GCATC	3 cut(s)	96, 141, 729
MaeI	CTAG	3 cut(s)	27, 59, 788
MaeIII	GTNAC	3 cut(s)	97, 157, 217
MalI	GATC	3 cut(s)	6, 31, 915
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	3 cut(s)	4, 29, 913
MflI	RGATCY	2 cut(s)	4, 29
MhlI	GDGCHC	4 cut(s)	521, 562, 680, 981
MluCI	AATT	4 cut(s)	70, 83, 340, 928
MlyI	GAGTC	4 cut(s)	154, 408, 536, 854
MnlI	CCTC	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	859
MspI	CCGG	7 cut(s)	33, 47, 54, 113, 348, 381, 893
MspR9I	CCNGG	2 cut(s)	381, 657
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	3 cut(s)	300, 386, 480
MwoI	GCNNNNNNNGC	3 cut(s)	413, 602, 868
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	3 cut(s)	4, 29, 913
NlaIII	CATG	3 cut(s)	172, 554, 713
NlaIV	GGNNCC	2 cut(s)	130, 654
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	97, 157
PaeR7I	CTCGAG	1 cut(s)	146
PfeI	GAWTC	7 cut(s)	62, 191, 388, 425, 439, 670, 774
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	128, 304, 639, 760, 861
PleI	GAGTC	4 cut(s)	154, 407, 535, 853
PpsI	GAGTC	4 cut(s)	154, 407, 535, 853
Psp124BI	GAGCTC	3 cut(s)	521, 562, 981
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	130, 654
PspPI	GGNCC	3 cut(s)	44, 295, 652
PsrI	GAACNNNNNNTAC	2 cut(s)	437, 469
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	4, 29
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	859
SacI	GAGCTC	3 cut(s)	521, 562, 981
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	5 cut(s)	127, 303, 638, 759, 860
Sau3AI	GATC	3 cut(s)	4, 29, 913
Sau96I	GGNCC	3 cut(s)	44, 295, 652
SchI	GAGTC	4 cut(s)	154, 408, 536, 854
ScrFI	CCNGG	2 cut(s)	381, 657
SduI	GDGCHC	4 cut(s)	521, 562, 680, 981
SfaNI	GCATC	3 cut(s)	96, 141, 729
SfcI	CTRYAG	3 cut(s)	324, 641, 759
Sfr274I	CTCGAG	1 cut(s)	146
SinI	GGWCC	2 cut(s)	295, 652
SlaI	CTCGAG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	70, 83, 340, 928
SsiI	CCGC	3 cut(s)	126, 298, 303
SspMI	CTAG	3 cut(s)	27, 59, 788
SstI	GAGCTC	3 cut(s)	521, 562, 981
StyD4I	CCNGG	2 cut(s)	379, 655
StyI	CCWWGG	2 cut(s)	13, 168
TaaI	ACNGT	2 cut(s)	217, 338
TaqI	TCGA	4 cut(s)	147, 500, 777, 876
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	4 cut(s)	70, 83, 340, 928
TauI	GCSGC	2 cut(s)	129, 305
TfiI	GAWTC	7 cut(s)	62, 191, 388, 425, 439, 670, 774
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	2 cut(s)	229, 685
TseFI	GTSAC	2 cut(s)	97, 157
TseI	GCWGC	3 cut(s)	637, 758, 859
Tsp45I	GTSAC	2 cut(s)	97, 157
TspDTI	ATGAA	4 cut(s)	183, 539, 647, 711
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	2 cut(s)	229, 685
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	295, 652
XapI	RAATTY	1 cut(s)	83
XbaI	TCTAGA	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	146
XspI	CTAG	3 cut(s)	27, 59, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.