MD12G1063900.v1.1

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
7451894 .. 7454663
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1063900.v1.1.491

Sequence Viewer

Length: 942 bp
ATGGACCCAACCGGAGCAACCGTACTCGGATCCACTTTATCAGGACCCGAGATCGAATCCCTCCAATTCCGAGAAGAAATCCATCGACTCATGACAGCGCCGGAGAACGCCAGCTCCTTCACCGCGCTTCTAGAACTTGCGCCCACCCAAGCCATGGAGCTCCTCCACCTCTCGACGGAACCCGACTCTGCTCCGCCGCCGGCCGCCATCTCCGGCGACCCCCAACACGCGCCCTTCGTCCAGCACCTTCCTTTCAATTCGAGCCTCCCCTTCCCTACCAACCCCGCCCCAATCGAACGCGCCGCCAAGTTCTCGACCTTCGCCGGAGATGGCTCGCCGGATACAAACTCCGCGCTGTCGAACTCCGGCGCCGAATTGGAGAAGGTGAAGACCGAGCCGGCCGAGACCGATTCGAACCCTAGCTCGTCGCAGCTGACGCTTGACTTGACCAAAAACAACCAGAGGACCTCGGGTAAGAGAAAGGAGCGAGAGAAGAAGATTAAGGCCCCGACGAAGAAGTGCAAGACCGAAATCAAAGAGGACGCCGAGAAGATGCCGTACGTTCATGTTCGAGCTCGTCGCGGTCAAGCCACGGACAACCATAGCTTGGCTGAGCGAGCAAGGAGAGAGAAGATTAATGCGAGGATGAAGCTGCTGCAGGAGCTGGTCCCAGGATGCAATAAGTTCCTTCTTTTCTACCAAGAAAAGTGCTCCCTGGGCTTGTCCCAGTGGCATTTTCAAAATTTTGAGAAAATGGAAAAGTGTAGTGGTGGGGTGAGTGTGGTGATGGTGATTCTCCTTTTTTTTTTTTTTTTTTCCTCCCCTCGCTCCTCTCCTCTCACGGTCTTTTTCACTTCTTTTTCTTTATACTTTTTCATTCTCTTTGTACTTTTTGCTTTTTTCTCTACATACAAAGATGAAATCGGGTGTGTACTGGGCTAG

Protein Analysis

314

Amino Acids

34.78

Weight (kDa)

7.05

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccB7I CCANNNNNTGG 2 cut(s) 154, 607
AccII CGCG 5 cut(s) 125, 230, 300, 353, 582
AciI CCGC 8 cut(s) 123, 194, 197, 204, 285, 303, 351, 582
AclWI GGATC 2 cut(s) 24, 37
AcoI YGGCCR 2 cut(s) 201, 399
AcsI RAATTY 1 cut(s) 742
AcyI GRCGYC 2 cut(s) 369, 543
AfaI GTAC 4 cut(s) 24, 560, 888, 933
AfiI CCNNNNNNNGG 3 cut(s) 154, 175, 607
AgsI TTSAA 2 cut(s) 256, 740
AjnI CCWGG 2 cut(s) 670, 714
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 8 cut(s) 114, 160, 423, 433, 575, 606, 652, 664
AluI AGCT 8 cut(s) 114, 160, 423, 433, 575, 606, 652, 664
Alw21I GWGCWC 3 cut(s) 162, 577, 713
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 2 cut(s) 24, 37
AlwNI CAGNNNCTG 1 cut(s) 664
Ama87I CYCGRG 2 cut(s) 47, 469
AoxI GGCC 3 cut(s) 201, 399, 504
ApeKI GCWGC 3 cut(s) 430, 652, 655
ApoI RAATTY 1 cut(s) 742
AseI ATTAAT 1 cut(s) 636
AspLEI GCGC 7 cut(s) 100, 127, 142, 232, 302, 355, 371
AspS9I GGNCC 5 cut(s) 4, 44, 465, 505, 667
AsuHPI GGTGA 5 cut(s) 112, 397, 787, 796, 802
AsuII TTCGAA 1 cut(s) 413
AvaI CYCGRG 2 cut(s) 47, 469
AvaII GGWCC 4 cut(s) 4, 44, 465, 667
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 162, 577
BarI GAAGNNNNNNTAC 2 cut(s) 542, 574
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 3 cut(s) 162, 577, 713
BbvI GCAGC 3 cut(s) 442, 639, 642
BccI CCATC 4 cut(s) 90, 215, 323, 781
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 2 cut(s) 672, 716
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 398
BfaI CTAG 3 cut(s) 131, 420, 940
BfmI CTRYAG 1 cut(s) 656
BfoI RGCGCY 2 cut(s) 101, 372
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 6 cut(s) 197, 204, 303, 431, 653, 656
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 6 cut(s) 198, 205, 304, 432, 654, 657
Bme1390I CCNGG 2 cut(s) 672, 716
Bme18I GGWCC 4 cut(s) 4, 44, 465, 667
BmeT110I CYCGRG 2 cut(s) 47, 469
BmgT120I GGNCC 5 cut(s) 4, 44, 465, 505, 667
BmiI GGNNCC 7 cut(s) 6, 31, 46, 180, 370, 507, 669
BmrFI CCNGG 2 cut(s) 672, 716
BmrI ACTGGG 1 cut(s) 721
BmsI GCATC 2 cut(s) 543, 665
BmuI ACTGGG 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 395
Bpu1102I GCTNAGC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 413
BsaHI GRCGYC 2 cut(s) 369, 543
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 6 cut(s) 153, 468, 591, 670, 714, 715
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 175, 607
Bse118I RCCGGY 2 cut(s) 199, 397
Bse1I ACTGG 2 cut(s) 727, 939
BseBI CCWGG 2 cut(s) 672, 716
BseDI CCNNGG 6 cut(s) 153, 468, 591, 670, 714, 715
BseGI GGATG 2 cut(s) 651, 680
BseLI CCNNNNNNNGG 3 cut(s) 154, 175, 607
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 2 cut(s) 727, 939
BseRI GAGGAG 3 cut(s) 152, 820, 825
BseX3I CGGCCG 2 cut(s) 201, 399
BseXI GCAGC 3 cut(s) 442, 639, 642
Bsh1236I CGCG 5 cut(s) 125, 230, 300, 353, 582
Bsh1285I CGRYCG 2 cut(s) 204, 402
BshFI GGCC 3 cut(s) 203, 401, 506
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 2 cut(s) 204, 402
BsiHKAI GWGCWC 3 cut(s) 162, 577, 713
BsiHKCI CYCGRG 2 cut(s) 47, 469
BsiSI CCGG 8 cut(s) 12, 101, 200, 213, 324, 338, 366, 398
BsiWI CGTACG 1 cut(s) 558
BslFI GGGAC 2 cut(s) 653, 709
BslI CCNNNNNNNGG 3 cut(s) 154, 175, 607
BsmAI GTCTC 1 cut(s) 398
BsmFI GGGAC 2 cut(s) 653, 709
BsnI GGCC 3 cut(s) 203, 401, 506
Bso31I GGTCTC 1 cut(s) 398
BsoBI CYCGRG 2 cut(s) 47, 469
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 3 cut(s) 162, 577, 713
Bsp143I GATC 2 cut(s) 29, 51
Bsp1720I GCTNAGC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 8 cut(s) 123, 194, 197, 204, 285, 303, 351, 582
BspANI GGCC 3 cut(s) 203, 401, 506
BspCNI CTCAG 1 cut(s) 604
BspFNI CGCG 5 cut(s) 125, 230, 300, 353, 582
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 7 cut(s) 6, 31, 46, 180, 370, 507, 669
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 2 cut(s) 24, 37
BspT104I TTCGAA 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 398
BsrFI RCCGGY 2 cut(s) 199, 397
BsrI ACTGG 2 cut(s) 727, 939
BssAI RCCGGY 2 cut(s) 199, 397
BssECI CCNNGG 6 cut(s) 153, 468, 591, 670, 714, 715
BssMI GATC 2 cut(s) 29, 51
BssNI GRCGYC 2 cut(s) 369, 543
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 672, 716
Bst4CI ACNGT 2 cut(s) 22, 844
BstACI GRCGYC 2 cut(s) 369, 543
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 5 cut(s) 112, 201, 335, 399, 618
BstDEI CTNAG 1 cut(s) 612
BstDSI CCRYGG 2 cut(s) 153, 591
BstF5I GGATG 2 cut(s) 651, 680
BstFNI CGCG 5 cut(s) 125, 230, 300, 353, 582
BstH2I RGCGCY 2 cut(s) 101, 372
BstHHI GCGC 7 cut(s) 100, 127, 142, 232, 302, 355, 371
BstKTI GATC 2 cut(s) 32, 54
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 2 cut(s) 29, 51
BstMCI CGRYCG 2 cut(s) 204, 402
BstMWI GCNNNNNNNGC 4 cut(s) 436, 617, 661, 717
BstNI CCWGG 2 cut(s) 672, 716
BstSCI CCNGG 2 cut(s) 670, 714
BstSFI CTRYAG 1 cut(s) 656
BstUI CGCG 5 cut(s) 125, 230, 300, 353, 582
BstV1I GCAGC 3 cut(s) 442, 639, 642
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BstZI CGGCCG 2 cut(s) 201, 399
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 203, 401, 506
BtgI CCRYGG 2 cut(s) 153, 591
BtsCI GGATG 2 cut(s) 651, 680
BtsIMutI CAGTG 1 cut(s) 734
Cac8I GCNNGC 5 cut(s) 112, 201, 335, 399, 618
CaiI CAGNNNCTG 1 cut(s) 664
CciI TCATGA 1 cut(s) 90
CfoI GCGC 7 cut(s) 100, 127, 142, 232, 302, 355, 371
Cfr10I RCCGGY 2 cut(s) 199, 397
Cfr13I GGNCC 5 cut(s) 4, 44, 465, 505, 667
CseI GACGC 2 cut(s) 445, 551
Csp6I GTAC 4 cut(s) 23, 559, 887, 932
CviAII CATG 3 cut(s) 91, 154, 566
CviQI GTAC 4 cut(s) 23, 559, 887, 932
DdeI CTNAG 1 cut(s) 612
DinI GGCGCC 1 cut(s) 370
DpnI GATC 2 cut(s) 31, 53
DpnII GATC 2 cut(s) 29, 51
EaeI YGGCCR 2 cut(s) 201, 399
EagI CGGCCG 2 cut(s) 201, 399
EciI GGCGGA 1 cut(s) 183
Ecl136II GAGCTC 2 cut(s) 160, 575
EclXI CGGCCG 2 cut(s) 201, 399
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 162, 577
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 4 cut(s) 4, 44, 465, 667
Eco52I CGGCCG 2 cut(s) 201, 399
Eco53kI GAGCTC 2 cut(s) 160, 575
Eco88I CYCGRG 2 cut(s) 47, 469
EcoICRI GAGCTC 2 cut(s) 160, 575
EcoO109I RGGNCCY 3 cut(s) 44, 465, 505
EcoRII CCWGG 2 cut(s) 670, 714
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 162, 577
EgeI GGCGCC 1 cut(s) 370
EheI GGCGCC 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 94, 157, 569
FaiI YATR 6 cut(s) 92, 155, 567, 603, 868, 910
FaqI GGGAC 2 cut(s) 653, 709
FatI CATG 3 cut(s) 90, 153, 565
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 6 cut(s) 197, 204, 303, 431, 653, 656
FokI GGATG 2 cut(s) 658, 687
FriOI GRGCYC 2 cut(s) 162, 577
Fsp4HI GCNGC 6 cut(s) 197, 204, 303, 431, 653, 656
FspBI CTAG 3 cut(s) 131, 420, 940
GlaI GCGC 7 cut(s) 99, 126, 141, 231, 301, 354, 370
GluI GCNGC 6 cut(s) 197, 204, 303, 431, 653, 656
HaeII RGCGCY 2 cut(s) 101, 372
HaeIII GGCC 3 cut(s) 203, 401, 506
HapII CCGG 8 cut(s) 12, 101, 200, 213, 324, 338, 366, 398
HgaI GACGC 2 cut(s) 445, 551
HhaI GCGC 7 cut(s) 100, 127, 142, 232, 302, 355, 371
Hin1I GRCGYC 2 cut(s) 369, 543
Hin1II CATG 3 cut(s) 94, 157, 569
Hin6I GCGC 7 cut(s) 98, 125, 140, 230, 300, 353, 369
HinP1I GCGC 7 cut(s) 98, 125, 140, 230, 300, 353, 369
HinfI GANTC 5 cut(s) 56, 87, 185, 410, 793
HpaII CCGG 8 cut(s) 12, 101, 200, 213, 324, 338, 366, 398
HphI GGTGA 5 cut(s) 112, 397, 787, 796, 802
Hpy166II GTNNAC 1 cut(s) 932
Hpy188I TCNGA 2 cut(s) 29, 71
Hpy188III TCNNGA 5 cut(s) 42, 91, 131, 172, 313
Hpy8I GTNNAC 1 cut(s) 932
Hpy99I CGWCG 4 cut(s) 178, 430, 514, 582
HpyAV CCTTC 7 cut(s) 127, 244, 257, 280, 328, 376, 698
HpyCH4III ACNGT 2 cut(s) 22, 844
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 3 cut(s) 522, 658, 678
HpyF10VI GCNNNNNNNGC 4 cut(s) 436, 617, 661, 717
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 1 cut(s) 561
Hsp92I GRCGYC 2 cut(s) 369, 543
Hsp92II CATG 3 cut(s) 94, 157, 569
HspAI GCGC 7 cut(s) 98, 125, 140, 230, 300, 353, 369
KasI GGCGCC 1 cut(s) 368
KroI GCCGGC 2 cut(s) 199, 397
KroNI GCCGGC 2 cut(s) 201, 399
Kzo9I GATC 2 cut(s) 29, 51
LmnI GCTCC 9 cut(s) 14, 119, 157, 165, 196, 484, 661, 716, 833
Lsp1109I GCAGC 3 cut(s) 442, 639, 642
LweI GCATC 2 cut(s) 543, 665
MaeI CTAG 3 cut(s) 131, 420, 940
MaeII ACGT 1 cut(s) 561
MalI GATC 2 cut(s) 31, 53
MboI GATC 2 cut(s) 29, 51
MboII GAAGA 7 cut(s) 86, 400, 505, 508, 526, 562, 643
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 3 cut(s) 162, 577, 713
MluCI AATT 4 cut(s) 65, 256, 374, 742
Mly113I GGCGCC 1 cut(s) 369
MlyI GAGTC 2 cut(s) 81, 179
MroNI GCCGGC 2 cut(s) 199, 397
MseI TTAA 2 cut(s) 501, 636
MspA1I CMGCKG 1 cut(s) 433
MspI CCGG 8 cut(s) 12, 101, 200, 213, 324, 338, 366, 398
MspR9I CCNGG 2 cut(s) 672, 716
MvaI CCWGG 2 cut(s) 672, 716
MvnI CGCG 5 cut(s) 125, 230, 300, 353, 582
MwoI GCNNNNNNNGC 4 cut(s) 436, 617, 661, 717
NaeI GCCGGC 2 cut(s) 201, 399
NarI GGCGCC 1 cut(s) 369
NcoI CCATGG 1 cut(s) 153
NdeII GATC 2 cut(s) 29, 51
NgoMIV GCCGGC 2 cut(s) 199, 397
NlaIII CATG 3 cut(s) 94, 157, 569
NlaIV GGNNCC 7 cut(s) 6, 31, 46, 180, 370, 507, 669
NmeAIII GCCGAG 2 cut(s) 427, 571
NspV TTCGAA 1 cut(s) 413
PagI TCATGA 1 cut(s) 90
PasI CCCWGGG 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdiI GCCGGC 2 cut(s) 201, 399
PfeI GAWTC 3 cut(s) 56, 410, 793
Pfl23II CGTACG 1 cut(s) 558
PflMI CCANNNNNTGG 2 cut(s) 154, 607
PkrI GCNGC 6 cut(s) 198, 205, 304, 432, 654, 657
PleI GAGTC 2 cut(s) 81, 179
PluTI GGCGCC 1 cut(s) 372
PpsI GAGTC 2 cut(s) 81, 179
PpuMI RGGWCCY 2 cut(s) 44, 465
PshBI ATTAAT 1 cut(s) 636
Psp124BI GAGCTC 2 cut(s) 162, 577
Psp5II RGGWCCY 2 cut(s) 44, 465
Psp6I CCWGG 2 cut(s) 670, 714
PspGI CCWGG 2 cut(s) 670, 714
PspLI CGTACG 1 cut(s) 558
PspN4I GGNNCC 7 cut(s) 6, 31, 46, 180, 370, 507, 669
PspPI GGNCC 5 cut(s) 4, 44, 465, 505, 667
PspPPI RGGWCCY 2 cut(s) 44, 465
PstI CTGCAG 1 cut(s) 660
PstNI CAGNNNCTG 1 cut(s) 664
PsuI RGATCY 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 433
RsaI GTAC 4 cut(s) 24, 560, 888, 933
RsaNI GTAC 4 cut(s) 23, 559, 887, 932
SacI GAGCTC 2 cut(s) 162, 577
SaqAI TTAA 2 cut(s) 501, 636
SatI GCNGC 6 cut(s) 197, 204, 303, 431, 653, 656
Sau3AI GATC 2 cut(s) 29, 51
Sau96I GGNCC 5 cut(s) 4, 44, 465, 505, 667
SchI GAGTC 2 cut(s) 81, 179
ScrFI CCNGG 2 cut(s) 672, 716
SduI GDGCHC 3 cut(s) 162, 577, 713
SfaNI GCATC 2 cut(s) 543, 665
SfcI CTRYAG 1 cut(s) 656
SfoI GGCGCC 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 413
SinI GGWCC 4 cut(s) 4, 44, 465, 667
Sse9I AATT 4 cut(s) 65, 256, 374, 742
SsiI CCGC 8 cut(s) 123, 194, 197, 204, 285, 303, 351, 582
SspDI GGCGCC 1 cut(s) 368
SspMI CTAG 3 cut(s) 131, 420, 940
SstI GAGCTC 2 cut(s) 162, 577
StyD4I CCNGG 2 cut(s) 670, 714
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 22, 844
TaiI ACGT 1 cut(s) 564
TaqI TCGA 9 cut(s) 54, 85, 173, 260, 294, 314, 359, 413, 571
TaqII GACCGA 3 cut(s) 407, 422, 542
TasI AATT 4 cut(s) 65, 256, 374, 742
TatI WGTACW 2 cut(s) 886, 931
TauI GCSGC 3 cut(s) 199, 206, 305
TfiI GAWTC 3 cut(s) 56, 410, 793
Tru1I TTAA 2 cut(s) 501, 636
Tru9I TTAA 2 cut(s) 501, 636
TscAI CASTG 1 cut(s) 734
TseI GCWGC 3 cut(s) 430, 652, 655
TspDTI ATGAA 4 cut(s) 554, 662, 865, 933
TspGWI ACGGA 2 cut(s) 191, 608
TspRI CASTG 1 cut(s) 734
Van91I CCANNNNNTGG 2 cut(s) 154, 607
VpaK11BI GGWCC 4 cut(s) 4, 44, 465, 667
VspI ATTAAT 1 cut(s) 636
XapI RAATTY 1 cut(s) 742
XbaI TCTAGA 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 3 cut(s) 131, 420, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.