Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004976

Physical Location & Seq

Genomic Coordinates Forward (+)

7454665 .. 7457269

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1064000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATGTGGATTTCAGGAACAGCATTGGTTCTAGATGAAATCATCAGTCACGTGCAGTCCCTACAACGTCAAGTTGAGATCTTATCAATGAGACTTGCAGCAGTCAACCCGAGAATTGATTTCAACTTTGATGGTCTATTGGTTGCTGAAAGTGGATCTCTGATGGAAAGTAACTTCGCCGGTATGGTTACACCTCTGATGTGTCCGGAAGTCCCAATCAATAGGAACAGACAACCGTATCAACAGCAATGGCACTTTGATGCGCTTCAGCAGCAAGGTTGGGGGCGGGAAGAAGAAAATCACACTTTCATTACCCCAGAACCCTCCTCATCAGTTGGGGCTGTTCAGCAAACTCAGCAACTGCAGACAAGTCACCTGGAGATGGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

131

Amino Acids

14.78

Weight (kDa)

4.64

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT3G57800 AT3G57800
fragaria_vesca	FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930
malus_domestica	MD12G1063900.v1.1 MD12G1064000.v1.1 MD14G1064200.v1.1
prunus_persica	Prupe.7G070200_v2.0.a1
pyrus_communis	pycom12g05580 pycom14g05190
rosa_chinensis	RchiOBHm_Chr3g0480751
rosa_laevigata	RLG00000023457
rosa_multiflora	Rmu_sc0003902.1_g000017
rosa_roxburghii	Rroxscaffold_6G00401100
rosa_rugosa	Rorug03G0185300 Rorug03G0185300
rosa_samantha	Rh3AG237400 Rh3BG270900 Rh3CG267000 Rh3CG267100 Rh3DG263000
rosa_wichuraiana	Rw3G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	98, 271
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	109
BaeI	ACNNNNGTAYC	2 cut(s)	221, 254
BbrPI	CACGTG	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	110, 283
BccI	CCATC	3 cut(s)	125, 157, 376
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	2 cut(s)	99, 272
BlsI	GCNGC	2 cut(s)	100, 273
Bme1390I	CCNGG	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	254
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	110, 283
BsgI	GTGCAG	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	180, 206
BslFI	GGGAC	2 cut(s)	43, 197
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	43, 197
BsoBI	CYCGRG	1 cut(s)	109
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	78, 155
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	367
BspEI	TCCGGA	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssMI	GATC	2 cut(s)	78, 155
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	81, 158
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	78, 155
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 355
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	110, 283
BstX2I	RGATCY	2 cut(s)	78, 155
BstYI	RGATCY	2 cut(s)	78, 155
CaiI	CAGNNNCTG	1 cut(s)	361
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	179
CviJI	RGCY	1 cut(s)	341
CviKI_1	RGCY	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	80, 157
DpnII	GATC	2 cut(s)	78, 155
Eco57I	CTGAAG	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	375
FaiI	YATR	1 cut(s)	185
FaqI	GGGAC	2 cut(s)	43, 197
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	99, 272
Fsp4HI	GCNGC	2 cut(s)	99, 272
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	2 cut(s)	99, 272
HapII	CCGG	2 cut(s)	180, 206
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HpaII	CCGG	2 cut(s)	180, 206
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	162, 198
Hpy188III	TCNNGA	3 cut(s)	15, 32, 206
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	2 cut(s)	51, 67
HpyCH4V	TGCA	3 cut(s)	55, 98, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 355
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	51, 67
HspAI	GCGC	1 cut(s)	263
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	78, 155
LpnPI	CCDG	5 cut(s)	193, 219, 330, 362, 389
Lsp1109I	GCAGC	2 cut(s)	110, 283
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	51, 67
MaeIII	GTNAC	4 cut(s)	47, 170, 187, 371
MalI	GATC	2 cut(s)	80, 157
MboI	GATC	2 cut(s)	78, 155
MboII	GAAGA	2 cut(s)	302, 305
MflI	RGATCY	2 cut(s)	78, 155
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	3 cut(s)	204, 334, 337
MroI	TCCGGA	1 cut(s)	205
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	2 cut(s)	180, 206
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	271, 355
NdeII	GATC	2 cut(s)	78, 155
NmuCI	GTSAC	2 cut(s)	47, 371
PkrI	GCNGC	2 cut(s)	100, 273
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	375
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	78, 155
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	2 cut(s)	99, 272
Sau3AI	GATC	2 cut(s)	78, 155
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	5 cut(s)	54, 70, 196, 280, 378
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	2 cut(s)	54, 70
TasI	AATT	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	47, 371
TseI	GCWGC	2 cut(s)	98, 271
Tsp45I	GTSAC	2 cut(s)	47, 371
TspDTI	ATGAA	2 cut(s)	51, 298
XbaI	TCTAGA	1 cut(s)	31
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.