Rmu_sc0003902.1_g000017

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003902.1
Physical Location & Seq
Reverse (-)
62168 .. 66856
4689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003902.1_g000017.1.cds

Sequence Viewer

Length: 1179 bp
atggacccaaccgccggaaacgtacccggatccgctgtaaccggacccgatcacgaagaacccggactcgagactctccaattccgcgaggaaatccagcggctgatgacggtgccgccggacaacgccagctccttcacggcgcttctggaacttccgccgacccaagccatggagctcctccacctctcgccggagtccgaacctaatccggctccggccgcggtttccggcaagccgccaccgctgctcgagccccgcgcgcatcctttcaattccagcctcacgtttcccagcaacgccgccctaatcgaacgcgccgccaagttctcgatcttcggcggcggcgagcagtcgccggagacacatcctttcaattccagcctcacgtttcccagcaacgccgccctaatcgaacgcgccgccaagttctcgatcttcggcggcgagcagtcgccggagactggggccgtgccgtccaatcccggcgtcaacttggagaaggtgaagagcgagcctgccgagtccgattcgaaccctaactcgtcgcaggagactaagaacaaccaaaggtcgtcggccaagagaaaggagcgagaaaagaaggtcaaggtatcaatgaaaaagagcaaaattgaagctaaggaagatgctgacaagattccctatgttcacgttcgagctcgccggggtcaagctacagatagccatagcttagcagagcgagcgaggagagagaaaattaatgcgaggatgaagttgctacaggagctggtcccaggatgcagtaagatttcaggtaccgccttagttctggatgaaatcatcaatcatgtgcagtccttacaacgtcaagttgagttcttatcgatgagacttgcgacagtcgacccaagaattgatagcaaccttgatcatttattggccactgaaagtctatctctaatgcaaagtaacttctccaatatggctccacccattatgtggccagaacttcccatcaatgggaacagacaacagtatcaacagcaatggcattttgatgctcttcatcagccaggttgggcgagggaagaagataatcatattttcattactccagaggcctcactcatcagttgcaactcttcggcaaattcagcatctctgcacacaggtcacgtgaagacggagctgtga

Protein Analysis

392

Amino Acids

43.01

Weight (kDa)

5.94

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 800
AccB1I GGYRCC 2 cut(s) 112, 800
AccB7I CCANNNNNTGG 2 cut(s) 172, 984
AccI GTMKAC 1 cut(s) 888
AccII CGCG 6 cut(s) 87, 224, 261, 263, 318, 420
AclWI GGATC 2 cut(s) 24, 37
AcoI YGGCCR 4 cut(s) 219, 579, 924, 986
AcsI RAATTY 1 cut(s) 1135
AcvI CACGTG 1 cut(s) 1162
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 2 cut(s) 24, 802
AfiI CCNNNNNNNGG 7 cut(s) 14, 172, 193, 464, 984, 1004, 1005
AgsI TTSAA 3 cut(s) 274, 376, 638
AjnI CCWGG 2 cut(s) 778, 1057
AluBI AGCT 8 cut(s) 132, 178, 641, 683, 698, 714, 772, 1174
AluI AGCT 8 cut(s) 132, 178, 641, 683, 698, 714, 772, 1174
Alw21I GWGCWC 2 cut(s) 180, 685
Alw26I GTCTC 5 cut(s) 65, 356, 455, 548, 868
AlwI GGATC 2 cut(s) 24, 37
AlwNI CAGNNNCTG 2 cut(s) 103, 772
Ama87I CYCGRG 2 cut(s) 68, 251
AoxI GGCC 6 cut(s) 219, 468, 579, 924, 986, 1104
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 1135
AseI ATTAAT 1 cut(s) 744
Asp718I GGTACC 1 cut(s) 800
AspLEI GCGC 5 cut(s) 145, 263, 265, 320, 422
AspS9I GGNCC 4 cut(s) 4, 44, 468, 775
AsuC2I CCSGG 4 cut(s) 27, 63, 486, 689
AsuHPI GGTGA 1 cut(s) 517
AsuII TTCGAA 1 cut(s) 533
AvaI CYCGRG 2 cut(s) 68, 251
AvaII GGWCC 3 cut(s) 4, 44, 775
BaeI ACNNNNGTAYC 2 cut(s) 1004, 1037
BalI TGGCCA 2 cut(s) 926, 988
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 2 cut(s) 112, 800
BanII GRGCYC 3 cut(s) 180, 258, 685
BbrPI CACGTG 1 cut(s) 1162
BbsI GAAGAC 1 cut(s) 1172
Bbv12I GWGCWC 2 cut(s) 180, 685
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 1007
BceAI ACGGC 3 cut(s) 156, 455, 460
BciT130I CCWGG 2 cut(s) 780, 1059
BclI TGATCA 1 cut(s) 913
BcnI CCSGG 4 cut(s) 27, 63, 486, 689
BcoDI GTCTC 5 cut(s) 65, 356, 455, 548, 868
BfmI CTRYAG 2 cut(s) 699, 764
BfoI RGCGCY 1 cut(s) 146
BlpI GCTNAGC 1 cut(s) 715
Bme1390I CCNGG 6 cut(s) 27, 63, 486, 689, 780, 1059
Bme18I GGWCC 3 cut(s) 4, 44, 775
BmeT110I CYCGRG 2 cut(s) 68, 251
BmgT120I GGNCC 4 cut(s) 4, 44, 468, 775
BmiI GGNNCC 9 cut(s) 6, 31, 46, 114, 216, 469, 777, 802, 972
BmrFI CCNGG 6 cut(s) 27, 63, 486, 689, 780, 1059
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 5 cut(s) 274, 640, 773, 1033, 1151
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 1172
BpmI CTGGAG 1 cut(s) 1083
Bpu10I CCTNAGC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 715
Bpu14I TTCGAA 1 cut(s) 533
BpuMI CCSGG 4 cut(s) 27, 63, 486, 689
Bsa29I ATCGAT 1 cut(s) 869
BsaAI YACGTR 1 cut(s) 1162
BsaHI GRCGYC 1 cut(s) 489
BsaJI CCNNGG 4 cut(s) 171, 222, 688, 778
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 7 cut(s) 14, 172, 193, 464, 984, 1004, 1005
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 1037
BseBI CCWGG 2 cut(s) 780, 1059
BseCI ATCGAT 1 cut(s) 869
BseDI CCNNGG 4 cut(s) 171, 222, 688, 778
BseGI GGATG 5 cut(s) 265, 367, 759, 788, 823
BseLI CCNNNNNNNGG 7 cut(s) 14, 172, 193, 464, 984, 1004, 1005
BseMI GCAATG 1 cut(s) 1037
BseNI ACTGG 1 cut(s) 469
BsePI GCGCGC 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 170, 745
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 234
BseYI CCCAGC 2 cut(s) 293, 395
BsgI GTGCAG 2 cut(s) 857, 1133
Bsh1236I CGCG 6 cut(s) 87, 224, 261, 263, 318, 420
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 6 cut(s) 221, 470, 581, 926, 988, 1106
BshNI GGYRCC 2 cut(s) 112, 800
BshVI ATCGAT 1 cut(s) 869
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 180, 685
BsiHKCI CYCGRG 2 cut(s) 68, 251
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 7 cut(s) 14, 172, 193, 464, 984, 1004, 1005
BsmAI GTCTC 5 cut(s) 65, 356, 455, 548, 868
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 6 cut(s) 221, 470, 581, 926, 988, 1106
BsoBI CYCGRG 2 cut(s) 68, 251
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 3 cut(s) 180, 258, 685
Bsp143I GATC 5 cut(s) 29, 49, 333, 435, 913
Bsp1720I GCTNAGC 1 cut(s) 715
Bsp19I CCATGG 1 cut(s) 171
BspANI GGCC 6 cut(s) 221, 470, 581, 926, 988, 1106
BspDI ATCGAT 1 cut(s) 869
BspFNI CGCG 6 cut(s) 87, 224, 261, 263, 318, 420
BspLI GGNNCC 9 cut(s) 6, 31, 46, 114, 216, 469, 777, 802, 972
BspPI GGATC 2 cut(s) 24, 37
BspQI GCTCTTC 2 cut(s) 503, 1053
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 2 cut(s) 112, 800
BsrDI GCAATG 1 cut(s) 1037
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 4 cut(s) 171, 222, 688, 778
BssHII GCGCGC 1 cut(s) 261
BssMI GATC 5 cut(s) 29, 49, 333, 435, 913
BssNI GRCGYC 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 780, 1059
Bst4CI ACNGT 3 cut(s) 112, 886, 1020
Bst6I CTCTTC 3 cut(s) 503, 1053, 1132
BstACI GRCGYC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 1162
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 9 cut(s) 130, 236, 263, 350, 449, 515, 519, 685, 726
BstDEI CTNAG 4 cut(s) 558, 642, 715, 808
BstDSI CCRYGG 2 cut(s) 171, 222
BstF5I GGATG 5 cut(s) 265, 367, 759, 788, 823
BstFNI CGCG 6 cut(s) 87, 224, 261, 263, 318, 420
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 5 cut(s) 145, 263, 265, 320, 422
BstKTI GATC 5 cut(s) 32, 52, 336, 438, 916
BstMAI GTCTC 5 cut(s) 65, 356, 455, 548, 868
BstMBI GATC 5 cut(s) 29, 49, 333, 435, 913
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 8 cut(s) 221, 244, 247, 253, 262, 725, 769, 1139
BstNI CCWGG 2 cut(s) 780, 1059
BstSCI CCNGG 6 cut(s) 25, 61, 484, 687, 778, 1057
BstSFI CTRYAG 2 cut(s) 699, 764
BstUI CGCG 6 cut(s) 87, 224, 261, 263, 318, 420
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 1172
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BstZI CGGCCG 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 869
BsuRI GGCC 6 cut(s) 221, 470, 581, 926, 988, 1106
BsuTUI ATCGAT 1 cut(s) 869
BtgI CCRYGG 2 cut(s) 171, 222
BtsCI GGATG 5 cut(s) 265, 367, 759, 788, 823
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 9 cut(s) 130, 236, 263, 350, 449, 515, 519, 685, 726
CaiI CAGNNNCTG 2 cut(s) 103, 772
CfoI GCGC 5 cut(s) 145, 263, 265, 320, 422
Cfr13I GGNCC 4 cut(s) 4, 44, 468, 775
Cfr42I CCGCGG 1 cut(s) 225
ClaI ATCGAT 1 cut(s) 869
CseI GACGC 1 cut(s) 478
Csp6I GTAC 2 cut(s) 23, 801
CviAII CATG 2 cut(s) 172, 833
CviQI GTAC 2 cut(s) 23, 801
DdeI CTNAG 4 cut(s) 558, 642, 715, 808
DpnI GATC 5 cut(s) 31, 51, 335, 437, 915
DpnII GATC 5 cut(s) 29, 49, 333, 435, 913
EaeI YGGCCR 4 cut(s) 219, 579, 924, 986
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 3 cut(s) 503, 1053, 1132
EarI CTCTTC 3 cut(s) 503, 1053, 1132
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 2 cut(s) 178, 683
EclXI CGGCCG 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 1106
Eco24I GRGCYC 3 cut(s) 180, 258, 685
Eco47I GGWCC 3 cut(s) 4, 44, 775
Eco52I CGGCCG 1 cut(s) 219
Eco53kI GAGCTC 2 cut(s) 178, 683
Eco72I CACGTG 1 cut(s) 1162
Eco88I CYCGRG 2 cut(s) 68, 251
EcoICRI GAGCTC 2 cut(s) 178, 683
EcoRII CCWGG 2 cut(s) 778, 1057
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 3 cut(s) 180, 258, 685
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 2 cut(s) 175, 836
FaiI YATR 7 cut(s) 173, 669, 711, 834, 968, 983, 1086
FaqI GGGAC 1 cut(s) 761
FatI CATG 2 cut(s) 171, 832
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 888
FokI GGATG 5 cut(s) 252, 354, 766, 795, 830
FriOI GRGCYC 3 cut(s) 180, 258, 685
GlaI GCGC 5 cut(s) 144, 262, 264, 319, 421
GsaI CCCAGC 2 cut(s) 297, 399
GsuI CTGGAG 1 cut(s) 1083
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 6 cut(s) 221, 470, 581, 926, 988, 1106
HgaI GACGC 1 cut(s) 478
HhaI GCGC 5 cut(s) 145, 263, 265, 320, 422
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 2 cut(s) 175, 836
Hin6I GCGC 5 cut(s) 143, 261, 263, 318, 420
HinP1I GCGC 5 cut(s) 143, 261, 263, 318, 420
HincII GTYRAC 2 cut(s) 493, 889
HindII GTYRAC 2 cut(s) 493, 889
HinfI GANTC 6 cut(s) 66, 73, 197, 524, 530, 661
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 3 cut(s) 493, 673, 889
Hpy188I TCNGA 2 cut(s) 202, 529
Hpy188III TCNNGA 7 cut(s) 53, 70, 149, 331, 433, 815, 1100
Hpy8I GTNNAC 3 cut(s) 493, 673, 889
Hpy99I CGWCG 2 cut(s) 550, 580
HpyAV CCTTC 3 cut(s) 145, 496, 598
HpyCH4III ACNGT 3 cut(s) 112, 886, 1020
HpyCH4IV ACGT 6 cut(s) 21, 287, 389, 675, 850, 1161
HpyCH4V TGCA 5 cut(s) 786, 838, 949, 1122, 1150
HpyF10VI GCNNNNNNNGC 8 cut(s) 221, 244, 247, 253, 262, 725, 769, 1139
HpyF3I CTNAG 4 cut(s) 558, 642, 715, 808
HpySE526I ACGT 6 cut(s) 21, 287, 389, 675, 850, 1161
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 2 cut(s) 175, 836
HspAI GCGC 5 cut(s) 143, 261, 263, 318, 420
KpnI GGTACC 1 cut(s) 804
Ksp22I TGATCA 1 cut(s) 913
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 5 cut(s) 29, 49, 333, 435, 913
LguI GCTCTTC 2 cut(s) 503, 1053
LmnI GCTCC 8 cut(s) 137, 175, 183, 220, 592, 769, 976, 1171
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 5 cut(s) 274, 640, 773, 1033, 1151
MaeII ACGT 6 cut(s) 21, 287, 389, 675, 850, 1161
MaeIII GTNAC 3 cut(s) 37, 953, 1157
MalI GATC 5 cut(s) 31, 51, 335, 437, 915
MboI GATC 5 cut(s) 29, 49, 333, 435, 913
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 3 cut(s) 180, 258, 685
MlsI TGGCCA 2 cut(s) 926, 988
MluCI AATT 7 cut(s) 80, 274, 376, 633, 741, 897, 1135
MluNI TGGCCA 2 cut(s) 926, 988
MlyI GAGTC 4 cut(s) 60, 67, 206, 533
Mox20I TGGCCA 2 cut(s) 926, 988
MscI TGGCCA 2 cut(s) 926, 988
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 1041
Msp20I TGGCCA 2 cut(s) 926, 988
MspA1I CMGCKG 4 cut(s) 35, 100, 224, 247
MspR9I CCNGG 6 cut(s) 27, 63, 486, 689, 780, 1059
MvaI CCWGG 2 cut(s) 780, 1059
MvnI CGCG 6 cut(s) 87, 224, 261, 263, 318, 420
MwoI GCNNNNNNNGC 8 cut(s) 221, 244, 247, 253, 262, 725, 769, 1139
NciI CCSGG 4 cut(s) 27, 63, 486, 689
NcoI CCATGG 1 cut(s) 171
NdeII GATC 5 cut(s) 29, 49, 333, 435, 913
NlaIII CATG 2 cut(s) 175, 836
NlaIV GGNNCC 9 cut(s) 6, 31, 46, 114, 216, 469, 777, 802, 972
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 1157
NspV TTCGAA 1 cut(s) 533
PaeR7I CTCGAG 2 cut(s) 68, 251
PauI GCGCGC 1 cut(s) 261
PceI AGGCCT 1 cut(s) 1106
PciSI GCTCTTC 2 cut(s) 503, 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 2 cut(s) 530, 661
PflMI CCANNNNNTGG 2 cut(s) 172, 984
PleI GAGTC 4 cut(s) 60, 67, 205, 532
PmaCI CACGTG 1 cut(s) 1162
PmlI CACGTG 1 cut(s) 1162
PpsI GAGTC 4 cut(s) 60, 67, 205, 532
Ppu21I YACGTR 1 cut(s) 1162
PshBI ATTAAT 1 cut(s) 744
Psp124BI GAGCTC 2 cut(s) 180, 685
Psp6I CCWGG 2 cut(s) 778, 1057
PspCI CACGTG 1 cut(s) 1162
PspFI CCCAGC 2 cut(s) 293, 395
PspGI CCWGG 2 cut(s) 778, 1057
PspN4I GGNNCC 9 cut(s) 6, 31, 46, 114, 216, 469, 777, 802, 972
PspPI GGNCC 4 cut(s) 4, 44, 468, 775
PspXI VCTCGAGB 1 cut(s) 251
PstNI CAGNNNCTG 2 cut(s) 103, 772
PsuI RGATCY 1 cut(s) 29
PteI GCGCGC 1 cut(s) 261
RsaI GTAC 2 cut(s) 24, 802
RsaNI GTAC 2 cut(s) 23, 801
RseI CAYNNNNRTG 1 cut(s) 1041
SacI GAGCTC 2 cut(s) 180, 685
SacII CCGCGG 1 cut(s) 225
SalI GTCGAC 1 cut(s) 887
SapI GCTCTTC 2 cut(s) 503, 1053
SaqAI TTAA 1 cut(s) 744
Sau3AI GATC 5 cut(s) 29, 49, 333, 435, 913
Sau96I GGNCC 4 cut(s) 4, 44, 468, 775
SchI GAGTC 4 cut(s) 60, 67, 206, 533
ScrFI CCNGG 6 cut(s) 27, 63, 486, 689, 780, 1059
SduI GDGCHC 3 cut(s) 180, 258, 685
SfaNI GCATC 5 cut(s) 274, 640, 773, 1033, 1151
SfcI CTRYAG 2 cut(s) 699, 764
Sfr274I CTCGAG 2 cut(s) 68, 251
Sfr303I CCGCGG 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 533
SgrBI CCGCGG 1 cut(s) 225
SinI GGWCC 3 cut(s) 4, 44, 775
SlaI CTCGAG 2 cut(s) 68, 251
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 68, 251
SmoI CTYRAG 2 cut(s) 68, 251
Sse9I AATT 7 cut(s) 80, 274, 376, 633, 741, 897, 1135
SseBI AGGCCT 1 cut(s) 1106
SstI GAGCTC 2 cut(s) 180, 685
StuI AGGCCT 1 cut(s) 1106
StyD4I CCNGG 6 cut(s) 25, 61, 484, 687, 778, 1057
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 3 cut(s) 112, 886, 1020
TaiI ACGT 6 cut(s) 24, 290, 392, 678, 853, 1164
TasI AATT 7 cut(s) 80, 274, 376, 633, 741, 897, 1135
TfiI GAWTC 2 cut(s) 530, 661
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 934
TseFI GTSAC 1 cut(s) 1157
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 1157
TspDTI ATGAA 5 cut(s) 635, 770, 834, 1040, 1081
TspRI CASTG 1 cut(s) 934
Van91I CCANNNNNTGG 2 cut(s) 172, 984
VpaK11BI GGWCC 3 cut(s) 4, 44, 775
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 1 cut(s) 1135
XcmI CCANNNNNNNNNTGG 1 cut(s) 981
XhoI CTCGAG 2 cut(s) 68, 251
XmiI GTMKAC 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.