Transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT3G57800 AT3G57800 |
| fragaria_vesca | FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 |
| malus_domestica | MD12G1063900.v1.1 MD12G1064000.v1.1 MD14G1064200.v1.1 |
| prunus_persica | Prupe.7G070200_v2.0.a1 |
| pyrus_communis | pycom12g05580 pycom14g05190 |
| rosa_chinensis | RchiOBHm_Chr3g0480751 |
| rosa_laevigata | RLG00000023457 |
| rosa_multiflora | Rmu_sc0003902.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00401100 |
| rosa_rugosa | Rorug03G0185300 Rorug03G0185300 |
| rosa_samantha | Rh3AG237400 Rh3BG270900 Rh3CG267000 Rh3CG267100 Rh3DG263000 |
| rosa_wichuraiana | Rw3G021270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 800 |
| AccB1I | GGYRCC | 2 cut(s) | 112, 800 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 172, 984 |
| AccI | GTMKAC | 1 cut(s) | 888 |
| AccII | CGCG | 6 cut(s) | 87, 224, 261, 263, 318, 420 |
| AclWI | GGATC | 2 cut(s) | 24, 37 |
| AcoI | YGGCCR | 4 cut(s) | 219, 579, 924, 986 |
| AcsI | RAATTY | 1 cut(s) | 1135 |
| AcvI | CACGTG | 1 cut(s) | 1162 |
| AcyI | GRCGYC | 1 cut(s) | 489 |
| AfaI | GTAC | 2 cut(s) | 24, 802 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 14, 172, 193, 464, 984, 1004, 1005 |
| AgsI | TTSAA | 3 cut(s) | 274, 376, 638 |
| AjnI | CCWGG | 2 cut(s) | 778, 1057 |
| AluBI | AGCT | 8 cut(s) | 132, 178, 641, 683, 698, 714, 772, 1174 |
| AluI | AGCT | 8 cut(s) | 132, 178, 641, 683, 698, 714, 772, 1174 |
| Alw21I | GWGCWC | 2 cut(s) | 180, 685 |
| Alw26I | GTCTC | 5 cut(s) | 65, 356, 455, 548, 868 |
| AlwI | GGATC | 2 cut(s) | 24, 37 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 103, 772 |
| Ama87I | CYCGRG | 2 cut(s) | 68, 251 |
| AoxI | GGCC | 6 cut(s) | 219, 468, 579, 924, 986, 1104 |
| ApeKI | GCWGC | 1 cut(s) | 247 |
| ApoI | RAATTY | 1 cut(s) | 1135 |
| AseI | ATTAAT | 1 cut(s) | 744 |
| Asp718I | GGTACC | 1 cut(s) | 800 |
| AspLEI | GCGC | 5 cut(s) | 145, 263, 265, 320, 422 |
| AspS9I | GGNCC | 4 cut(s) | 4, 44, 468, 775 |
| AsuC2I | CCSGG | 4 cut(s) | 27, 63, 486, 689 |
| AsuHPI | GGTGA | 1 cut(s) | 517 |
| AsuII | TTCGAA | 1 cut(s) | 533 |
| AvaI | CYCGRG | 2 cut(s) | 68, 251 |
| AvaII | GGWCC | 3 cut(s) | 4, 44, 775 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1004, 1037 |
| BalI | TGGCCA | 2 cut(s) | 926, 988 |
| BamHI | GGATCC | 1 cut(s) | 29 |
| BanI | GGYRCC | 2 cut(s) | 112, 800 |
| BanII | GRGCYC | 3 cut(s) | 180, 258, 685 |
| BbrPI | CACGTG | 1 cut(s) | 1162 |
| BbsI | GAAGAC | 1 cut(s) | 1172 |
| Bbv12I | GWGCWC | 2 cut(s) | 180, 685 |
| BbvI | GCAGC | 1 cut(s) | 234 |
| BccI | CCATC | 1 cut(s) | 1007 |
| BceAI | ACGGC | 3 cut(s) | 156, 455, 460 |
| BciT130I | CCWGG | 2 cut(s) | 780, 1059 |
| BclI | TGATCA | 1 cut(s) | 913 |
| BcnI | CCSGG | 4 cut(s) | 27, 63, 486, 689 |
| BcoDI | GTCTC | 5 cut(s) | 65, 356, 455, 548, 868 |
| BfmI | CTRYAG | 2 cut(s) | 699, 764 |
| BfoI | RGCGCY | 1 cut(s) | 146 |
| BlpI | GCTNAGC | 1 cut(s) | 715 |
| Bme1390I | CCNGG | 6 cut(s) | 27, 63, 486, 689, 780, 1059 |
| Bme18I | GGWCC | 3 cut(s) | 4, 44, 775 |
| BmeT110I | CYCGRG | 2 cut(s) | 68, 251 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 44, 468, 775 |
| BmiI | GGNNCC | 9 cut(s) | 6, 31, 46, 114, 216, 469, 777, 802, 972 |
| BmrFI | CCNGG | 6 cut(s) | 27, 63, 486, 689, 780, 1059 |
| BmrI | ACTGGG | 1 cut(s) | 474 |
| BmsI | GCATC | 5 cut(s) | 274, 640, 773, 1033, 1151 |
| BmuI | ACTGGG | 1 cut(s) | 474 |
| BpiI | GAAGAC | 1 cut(s) | 1172 |
| BpmI | CTGGAG | 1 cut(s) | 1083 |
| Bpu10I | CCTNAGC | 1 cut(s) | 642 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 715 |
| Bpu14I | TTCGAA | 1 cut(s) | 533 |
| BpuMI | CCSGG | 4 cut(s) | 27, 63, 486, 689 |
| Bsa29I | ATCGAT | 1 cut(s) | 869 |
| BsaAI | YACGTR | 1 cut(s) | 1162 |
| BsaHI | GRCGYC | 1 cut(s) | 489 |
| BsaJI | CCNNGG | 4 cut(s) | 171, 222, 688, 778 |
| BsaWI | WCCGGW | 1 cut(s) | 41 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 116, 146 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 14, 172, 193, 464, 984, 1004, 1005 |
| Bse1I | ACTGG | 1 cut(s) | 469 |
| Bse3DI | GCAATG | 1 cut(s) | 1037 |
| BseBI | CCWGG | 2 cut(s) | 780, 1059 |
| BseCI | ATCGAT | 1 cut(s) | 869 |
| BseDI | CCNNGG | 4 cut(s) | 171, 222, 688, 778 |
| BseGI | GGATG | 5 cut(s) | 265, 367, 759, 788, 823 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 14, 172, 193, 464, 984, 1004, 1005 |
| BseMI | GCAATG | 1 cut(s) | 1037 |
| BseNI | ACTGG | 1 cut(s) | 469 |
| BsePI | GCGCGC | 1 cut(s) | 261 |
| BseRI | GAGGAG | 2 cut(s) | 170, 745 |
| BseX3I | CGGCCG | 1 cut(s) | 219 |
| BseXI | GCAGC | 1 cut(s) | 234 |
| BseYI | CCCAGC | 2 cut(s) | 293, 395 |
| BsgI | GTGCAG | 2 cut(s) | 857, 1133 |
| Bsh1236I | CGCG | 6 cut(s) | 87, 224, 261, 263, 318, 420 |
| Bsh1285I | CGRYCG | 1 cut(s) | 222 |
| BshFI | GGCC | 6 cut(s) | 221, 470, 581, 926, 988, 1106 |
| BshNI | GGYRCC | 2 cut(s) | 112, 800 |
| BshVI | ATCGAT | 1 cut(s) | 869 |
| BsiEI | CGRYCG | 1 cut(s) | 222 |
| BsiHKAI | GWGCWC | 2 cut(s) | 180, 685 |
| BsiHKCI | CYCGRG | 2 cut(s) | 68, 251 |
| BslFI | GGGAC | 1 cut(s) | 761 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 14, 172, 193, 464, 984, 1004, 1005 |
| BsmAI | GTCTC | 5 cut(s) | 65, 356, 455, 548, 868 |
| BsmFI | GGGAC | 1 cut(s) | 761 |
| BsnI | GGCC | 6 cut(s) | 221, 470, 581, 926, 988, 1106 |
| BsoBI | CYCGRG | 2 cut(s) | 68, 251 |
| Bsp119I | TTCGAA | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 3 cut(s) | 180, 258, 685 |
| Bsp143I | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 715 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspANI | GGCC | 6 cut(s) | 221, 470, 581, 926, 988, 1106 |
| BspDI | ATCGAT | 1 cut(s) | 869 |
| BspFNI | CGCG | 6 cut(s) | 87, 224, 261, 263, 318, 420 |
| BspLI | GGNNCC | 9 cut(s) | 6, 31, 46, 114, 216, 469, 777, 802, 972 |
| BspPI | GGATC | 2 cut(s) | 24, 37 |
| BspQI | GCTCTTC | 2 cut(s) | 503, 1053 |
| BspT104I | TTCGAA | 1 cut(s) | 533 |
| BspT107I | GGYRCC | 2 cut(s) | 112, 800 |
| BsrDI | GCAATG | 1 cut(s) | 1037 |
| BsrI | ACTGG | 1 cut(s) | 469 |
| BssECI | CCNNGG | 4 cut(s) | 171, 222, 688, 778 |
| BssHII | GCGCGC | 1 cut(s) | 261 |
| BssMI | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| BssNI | GRCGYC | 1 cut(s) | 489 |
| BssT1I | CCWWGG | 1 cut(s) | 171 |
| Bst2UI | CCWGG | 2 cut(s) | 780, 1059 |
| Bst4CI | ACNGT | 3 cut(s) | 112, 886, 1020 |
| Bst6I | CTCTTC | 3 cut(s) | 503, 1053, 1132 |
| BstACI | GRCGYC | 1 cut(s) | 489 |
| BstBAI | YACGTR | 1 cut(s) | 1162 |
| BstBI | TTCGAA | 1 cut(s) | 533 |
| BstC8I | GCNNGC | 9 cut(s) | 130, 236, 263, 350, 449, 515, 519, 685, 726 |
| BstDEI | CTNAG | 4 cut(s) | 558, 642, 715, 808 |
| BstDSI | CCRYGG | 2 cut(s) | 171, 222 |
| BstF5I | GGATG | 5 cut(s) | 265, 367, 759, 788, 823 |
| BstFNI | CGCG | 6 cut(s) | 87, 224, 261, 263, 318, 420 |
| BstH2I | RGCGCY | 1 cut(s) | 146 |
| BstHHI | GCGC | 5 cut(s) | 145, 263, 265, 320, 422 |
| BstKTI | GATC | 5 cut(s) | 32, 52, 336, 438, 916 |
| BstMAI | GTCTC | 5 cut(s) | 65, 356, 455, 548, 868 |
| BstMBI | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| BstMCI | CGRYCG | 1 cut(s) | 222 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 221, 244, 247, 253, 262, 725, 769, 1139 |
| BstNI | CCWGG | 2 cut(s) | 780, 1059 |
| BstSCI | CCNGG | 6 cut(s) | 25, 61, 484, 687, 778, 1057 |
| BstSFI | CTRYAG | 2 cut(s) | 699, 764 |
| BstUI | CGCG | 6 cut(s) | 87, 224, 261, 263, 318, 420 |
| BstV1I | GCAGC | 1 cut(s) | 234 |
| BstV2I | GAAGAC | 1 cut(s) | 1172 |
| BstX2I | RGATCY | 1 cut(s) | 29 |
| BstYI | RGATCY | 1 cut(s) | 29 |
| BstZI | CGGCCG | 1 cut(s) | 219 |
| Bsu15I | ATCGAT | 1 cut(s) | 869 |
| BsuRI | GGCC | 6 cut(s) | 221, 470, 581, 926, 988, 1106 |
| BsuTUI | ATCGAT | 1 cut(s) | 869 |
| BtgI | CCRYGG | 2 cut(s) | 171, 222 |
| BtsCI | GGATG | 5 cut(s) | 265, 367, 759, 788, 823 |
| BtsIMutI | CAGTG | 1 cut(s) | 927 |
| Cac8I | GCNNGC | 9 cut(s) | 130, 236, 263, 350, 449, 515, 519, 685, 726 |
| CaiI | CAGNNNCTG | 2 cut(s) | 103, 772 |
| CfoI | GCGC | 5 cut(s) | 145, 263, 265, 320, 422 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 44, 468, 775 |
| Cfr42I | CCGCGG | 1 cut(s) | 225 |
| ClaI | ATCGAT | 1 cut(s) | 869 |
| CseI | GACGC | 1 cut(s) | 478 |
| Csp6I | GTAC | 2 cut(s) | 23, 801 |
| CviAII | CATG | 2 cut(s) | 172, 833 |
| CviQI | GTAC | 2 cut(s) | 23, 801 |
| DdeI | CTNAG | 4 cut(s) | 558, 642, 715, 808 |
| DpnI | GATC | 5 cut(s) | 31, 51, 335, 437, 915 |
| DpnII | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| EaeI | YGGCCR | 4 cut(s) | 219, 579, 924, 986 |
| EagI | CGGCCG | 1 cut(s) | 219 |
| Eam1104I | CTCTTC | 3 cut(s) | 503, 1053, 1132 |
| EarI | CTCTTC | 3 cut(s) | 503, 1053, 1132 |
| EciI | GGCGGA | 1 cut(s) | 147 |
| Ecl136II | GAGCTC | 2 cut(s) | 178, 683 |
| EclXI | CGGCCG | 1 cut(s) | 219 |
| Eco130I | CCWWGG | 1 cut(s) | 171 |
| Eco147I | AGGCCT | 1 cut(s) | 1106 |
| Eco24I | GRGCYC | 3 cut(s) | 180, 258, 685 |
| Eco47I | GGWCC | 3 cut(s) | 4, 44, 775 |
| Eco52I | CGGCCG | 1 cut(s) | 219 |
| Eco53kI | GAGCTC | 2 cut(s) | 178, 683 |
| Eco72I | CACGTG | 1 cut(s) | 1162 |
| Eco88I | CYCGRG | 2 cut(s) | 68, 251 |
| EcoICRI | GAGCTC | 2 cut(s) | 178, 683 |
| EcoRII | CCWGG | 2 cut(s) | 778, 1057 |
| EcoT14I | CCWWGG | 1 cut(s) | 171 |
| EcoT38I | GRGCYC | 3 cut(s) | 180, 258, 685 |
| ErhI | CCWWGG | 1 cut(s) | 171 |
| FaeI | CATG | 2 cut(s) | 175, 836 |
| FaiI | YATR | 7 cut(s) | 173, 669, 711, 834, 968, 983, 1086 |
| FaqI | GGGAC | 1 cut(s) | 761 |
| FatI | CATG | 2 cut(s) | 171, 832 |
| FauI | CCCGC | 1 cut(s) | 266 |
| FbaI | TGATCA | 1 cut(s) | 913 |
| FblI | GTMKAC | 1 cut(s) | 888 |
| FokI | GGATG | 5 cut(s) | 252, 354, 766, 795, 830 |
| FriOI | GRGCYC | 3 cut(s) | 180, 258, 685 |
| GlaI | GCGC | 5 cut(s) | 144, 262, 264, 319, 421 |
| GsaI | CCCAGC | 2 cut(s) | 297, 399 |
| GsuI | CTGGAG | 1 cut(s) | 1083 |
| HaeII | RGCGCY | 1 cut(s) | 146 |
| HaeIII | GGCC | 6 cut(s) | 221, 470, 581, 926, 988, 1106 |
| HgaI | GACGC | 1 cut(s) | 478 |
| HhaI | GCGC | 5 cut(s) | 145, 263, 265, 320, 422 |
| Hin1I | GRCGYC | 1 cut(s) | 489 |
| Hin1II | CATG | 2 cut(s) | 175, 836 |
| Hin6I | GCGC | 5 cut(s) | 143, 261, 263, 318, 420 |
| HinP1I | GCGC | 5 cut(s) | 143, 261, 263, 318, 420 |
| HincII | GTYRAC | 2 cut(s) | 493, 889 |
| HindII | GTYRAC | 2 cut(s) | 493, 889 |
| HinfI | GANTC | 6 cut(s) | 66, 73, 197, 524, 530, 661 |
| HphI | GGTGA | 1 cut(s) | 517 |
| Hpy166II | GTNNAC | 3 cut(s) | 493, 673, 889 |
| Hpy188I | TCNGA | 2 cut(s) | 202, 529 |
| Hpy188III | TCNNGA | 7 cut(s) | 53, 70, 149, 331, 433, 815, 1100 |
| Hpy8I | GTNNAC | 3 cut(s) | 493, 673, 889 |
| Hpy99I | CGWCG | 2 cut(s) | 550, 580 |
| HpyAV | CCTTC | 3 cut(s) | 145, 496, 598 |
| HpyCH4III | ACNGT | 3 cut(s) | 112, 886, 1020 |
| HpyCH4IV | ACGT | 6 cut(s) | 21, 287, 389, 675, 850, 1161 |
| HpyCH4V | TGCA | 5 cut(s) | 786, 838, 949, 1122, 1150 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 221, 244, 247, 253, 262, 725, 769, 1139 |
| HpyF3I | CTNAG | 4 cut(s) | 558, 642, 715, 808 |
| HpySE526I | ACGT | 6 cut(s) | 21, 287, 389, 675, 850, 1161 |
| Hsp92I | GRCGYC | 1 cut(s) | 489 |
| Hsp92II | CATG | 2 cut(s) | 175, 836 |
| HspAI | GCGC | 5 cut(s) | 143, 261, 263, 318, 420 |
| KpnI | GGTACC | 1 cut(s) | 804 |
| Ksp22I | TGATCA | 1 cut(s) | 913 |
| KspI | CCGCGG | 1 cut(s) | 225 |
| Kzo9I | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| LguI | GCTCTTC | 2 cut(s) | 503, 1053 |
| LmnI | GCTCC | 8 cut(s) | 137, 175, 183, 220, 592, 769, 976, 1171 |
| Lsp1109I | GCAGC | 1 cut(s) | 234 |
| LweI | GCATC | 5 cut(s) | 274, 640, 773, 1033, 1151 |
| MaeII | ACGT | 6 cut(s) | 21, 287, 389, 675, 850, 1161 |
| MaeIII | GTNAC | 3 cut(s) | 37, 953, 1157 |
| MalI | GATC | 5 cut(s) | 31, 51, 335, 437, 915 |
| MboI | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| MflI | RGATCY | 1 cut(s) | 29 |
| MhlI | GDGCHC | 3 cut(s) | 180, 258, 685 |
| MlsI | TGGCCA | 2 cut(s) | 926, 988 |
| MluCI | AATT | 7 cut(s) | 80, 274, 376, 633, 741, 897, 1135 |
| MluNI | TGGCCA | 2 cut(s) | 926, 988 |
| MlyI | GAGTC | 4 cut(s) | 60, 67, 206, 533 |
| Mox20I | TGGCCA | 2 cut(s) | 926, 988 |
| MscI | TGGCCA | 2 cut(s) | 926, 988 |
| MseI | TTAA | 1 cut(s) | 744 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1041 |
| Msp20I | TGGCCA | 2 cut(s) | 926, 988 |
| MspA1I | CMGCKG | 4 cut(s) | 35, 100, 224, 247 |
| MspR9I | CCNGG | 6 cut(s) | 27, 63, 486, 689, 780, 1059 |
| MvaI | CCWGG | 2 cut(s) | 780, 1059 |
| MvnI | CGCG | 6 cut(s) | 87, 224, 261, 263, 318, 420 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 221, 244, 247, 253, 262, 725, 769, 1139 |
| NciI | CCSGG | 4 cut(s) | 27, 63, 486, 689 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| NlaIII | CATG | 2 cut(s) | 175, 836 |
| NlaIV | GGNNCC | 9 cut(s) | 6, 31, 46, 114, 216, 469, 777, 802, 972 |
| NmeAIII | GCCGAG | 1 cut(s) | 547 |
| NmuCI | GTSAC | 1 cut(s) | 1157 |
| NspV | TTCGAA | 1 cut(s) | 533 |
| PaeR7I | CTCGAG | 2 cut(s) | 68, 251 |
| PauI | GCGCGC | 1 cut(s) | 261 |
| PceI | AGGCCT | 1 cut(s) | 1106 |
| PciSI | GCTCTTC | 2 cut(s) | 503, 1053 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 345 |
| PfeI | GAWTC | 2 cut(s) | 530, 661 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 172, 984 |
| PleI | GAGTC | 4 cut(s) | 60, 67, 205, 532 |
| PmaCI | CACGTG | 1 cut(s) | 1162 |
| PmlI | CACGTG | 1 cut(s) | 1162 |
| PpsI | GAGTC | 4 cut(s) | 60, 67, 205, 532 |
| Ppu21I | YACGTR | 1 cut(s) | 1162 |
| PshBI | ATTAAT | 1 cut(s) | 744 |
| Psp124BI | GAGCTC | 2 cut(s) | 180, 685 |
| Psp6I | CCWGG | 2 cut(s) | 778, 1057 |
| PspCI | CACGTG | 1 cut(s) | 1162 |
| PspFI | CCCAGC | 2 cut(s) | 293, 395 |
| PspGI | CCWGG | 2 cut(s) | 778, 1057 |
| PspN4I | GGNNCC | 9 cut(s) | 6, 31, 46, 114, 216, 469, 777, 802, 972 |
| PspPI | GGNCC | 4 cut(s) | 4, 44, 468, 775 |
| PspXI | VCTCGAGB | 1 cut(s) | 251 |
| PstNI | CAGNNNCTG | 2 cut(s) | 103, 772 |
| PsuI | RGATCY | 1 cut(s) | 29 |
| PteI | GCGCGC | 1 cut(s) | 261 |
| RsaI | GTAC | 2 cut(s) | 24, 802 |
| RsaNI | GTAC | 2 cut(s) | 23, 801 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1041 |
| SacI | GAGCTC | 2 cut(s) | 180, 685 |
| SacII | CCGCGG | 1 cut(s) | 225 |
| SalI | GTCGAC | 1 cut(s) | 887 |
| SapI | GCTCTTC | 2 cut(s) | 503, 1053 |
| SaqAI | TTAA | 1 cut(s) | 744 |
| Sau3AI | GATC | 5 cut(s) | 29, 49, 333, 435, 913 |
| Sau96I | GGNCC | 4 cut(s) | 4, 44, 468, 775 |
| SchI | GAGTC | 4 cut(s) | 60, 67, 206, 533 |
| ScrFI | CCNGG | 6 cut(s) | 27, 63, 486, 689, 780, 1059 |
| SduI | GDGCHC | 3 cut(s) | 180, 258, 685 |
| SfaNI | GCATC | 5 cut(s) | 274, 640, 773, 1033, 1151 |
| SfcI | CTRYAG | 2 cut(s) | 699, 764 |
| Sfr274I | CTCGAG | 2 cut(s) | 68, 251 |
| Sfr303I | CCGCGG | 1 cut(s) | 225 |
| SfuI | TTCGAA | 1 cut(s) | 533 |
| SgrBI | CCGCGG | 1 cut(s) | 225 |
| SinI | GGWCC | 3 cut(s) | 4, 44, 775 |
| SlaI | CTCGAG | 2 cut(s) | 68, 251 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1041 |
| SmlI | CTYRAG | 2 cut(s) | 68, 251 |
| SmoI | CTYRAG | 2 cut(s) | 68, 251 |
| Sse9I | AATT | 7 cut(s) | 80, 274, 376, 633, 741, 897, 1135 |
| SseBI | AGGCCT | 1 cut(s) | 1106 |
| SstI | GAGCTC | 2 cut(s) | 180, 685 |
| StuI | AGGCCT | 1 cut(s) | 1106 |
| StyD4I | CCNGG | 6 cut(s) | 25, 61, 484, 687, 778, 1057 |
| StyI | CCWWGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 3 cut(s) | 112, 886, 1020 |
| TaiI | ACGT | 6 cut(s) | 24, 290, 392, 678, 853, 1164 |
| TasI | AATT | 7 cut(s) | 80, 274, 376, 633, 741, 897, 1135 |
| TfiI | GAWTC | 2 cut(s) | 530, 661 |
| Tru1I | TTAA | 1 cut(s) | 744 |
| Tru9I | TTAA | 1 cut(s) | 744 |
| TscAI | CASTG | 1 cut(s) | 934 |
| TseFI | GTSAC | 1 cut(s) | 1157 |
| TseI | GCWGC | 1 cut(s) | 247 |
| Tsp45I | GTSAC | 1 cut(s) | 1157 |
| TspDTI | ATGAA | 5 cut(s) | 635, 770, 834, 1040, 1081 |
| TspRI | CASTG | 1 cut(s) | 934 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 172, 984 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 44, 775 |
| VspI | ATTAAT | 1 cut(s) | 744 |
| XapI | RAATTY | 1 cut(s) | 1135 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 981 |
| XhoI | CTCGAG | 2 cut(s) | 68, 251 |
| XmiI | GTMKAC | 1 cut(s) | 888 |