FvH4_6g22930

Transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
16683669 .. 16689179
5511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22930.t5

Sequence Viewer

Length: 1059 bp
ATGGACCCAATCGCCGGAACCGTACCCGGATCCGCTTTACCCGGACCCGACCACGAAGAACCCGGACTCGACACCCTCCAATTCCGCGAGGAAATCCAGCGGCTCATGACGGTGCCGCAGCAGGAGAACGCCAGCTCCTTCACGGCGCTTCTTGAGCTCCCGCCGACCCAAGCCATGGAGCTCCTCCACCTCTCGCCGGAGCCTCCGGTTTCCGTTGGGCCGCTGCTCAAGTCCTCCTGTGTCAATCCTTTCAATTCCAGCCTCATGTTCCCCAGAGACGTCGAGCTAATCCAACGCGCCGCCAAGTTCTCGATCTTCGGCGGCGAGCAGTCGCCGGAAGCGGTCGCCGCGCCGTCGAACTCCGGCGTCAATATGGAGAAGGTGAAGAGCGAGCCTGCCGAGACCGATTCGAACCCTAACTCGTCGTCGATGGAGACCAAGAACAACCAGAGGTCGTCGGCCAAAAGAAAGGAACGAGAGAAGAAGGGCAAGGTGTCAACGAAGAAGAGCAAAACGGAAGTCAAAGAAGACGCCGACAAGGTTCCCTATGTTCACGTTCGAGCTCGCCGTGGCCAAGCTACCGATAGCCATAGCTTAGCAGAGCGAGCGAGGAGAGAGAAAATTAATGCGAGGATGAAGTTGCTACAAGAGCTGGTCCCAGGATGCAATAAGATTTCAGGTACCGCCTTAGTTCTGGATGAAATCATCAACCATGTGCAGTCCCTACAACGTCAAGTTGAGTTCTTATCAATGAGACTTGCGACAGTCGACCCAAGAATTGATAGCAACCTTGATCAATTATTGGCCACTGAAAGCCTATCTCTAATGCAAAGTAACTTCTCCAATATGGCGCCACCCCTTATGTGGCCAGAATTTCCCATCAATGGGAGCAGACAACAGTATCAACAGCAGTGGCACTTTGATGCTCTTCATCAGCCAGGTTGGGGAAGGGAAGAAGATAATCATACTTTCATTACTCCAGAGGCCTCACTCATGAGTTGCAACTCTTCAGCAAATTCAGCATCTCTGCACACAGGTCACGTGAAGACGGAGCTGTGA

Protein Analysis

353

Amino Acids

38.98

Weight (kDa)

5.97

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 196 - 243 1.8e-06 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 201 - 248 9.3e-08 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc65I GGTACC 1 cut(s) 680
AccB1I GGYRCC 3 cut(s) 112, 680, 850
AccB7I CCANNNNNTGG 1 cut(s) 175
AccI GTMKAC 1 cut(s) 768
AccII CGCG 3 cut(s) 87, 297, 350
AclWI GGATC 2 cut(s) 24, 37
AcoI YGGCCR 4 cut(s) 459, 571, 804, 866
AcsI RAATTY 2 cut(s) 872, 1015
AcuI CTGAAG 1 cut(s) 993
AcvI CACGTG 1 cut(s) 1042
AcyI GRCGYC 4 cut(s) 279, 366, 531, 851
AfaI GTAC 2 cut(s) 24, 682
AfiI CCNNNNNNNGG 7 cut(s) 14, 175, 196, 864, 884, 885, 944
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 2 cut(s) 658, 937
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 9 cut(s) 135, 157, 181, 286, 563, 578, 594, 652, 1054
AluI AGCT 9 cut(s) 135, 157, 181, 286, 563, 578, 594, 652, 1054
Alw21I GWGCWC 3 cut(s) 159, 183, 565
Alw26I GTCTC 4 cut(s) 270, 395, 428, 748
AlwI GGATC 2 cut(s) 24, 37
AoxI GGCC 6 cut(s) 218, 459, 571, 804, 866, 984
ApeKI GCWGC 2 cut(s) 118, 223
ApoI RAATTY 2 cut(s) 872, 1015
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AseI ATTAAT 1 cut(s) 624
Asp718I GGTACC 1 cut(s) 680
AspLEI GCGC 4 cut(s) 148, 299, 352, 853
AspS9I GGNCC 4 cut(s) 4, 44, 218, 655
AsuC2I CCSGG 3 cut(s) 27, 42, 63
AsuHPI GGTGA 1 cut(s) 394
AsuII TTCGAA 1 cut(s) 410
AvaII GGWCC 3 cut(s) 4, 44, 655
BaeI ACNNNNGTAYC 2 cut(s) 884, 917
BalI TGGCCA 3 cut(s) 573, 806, 868
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 3 cut(s) 112, 680, 850
BanII GRGCYC 3 cut(s) 159, 183, 565
BbrPI CACGTG 1 cut(s) 1042
BbsI GAAGAC 2 cut(s) 534, 1052
Bbv12I GWGCWC 3 cut(s) 159, 183, 565
BbvI GCAGC 2 cut(s) 130, 210
BccI CCATC 2 cut(s) 424, 887
BceAI ACGGC 3 cut(s) 159, 337, 552
BciT130I CCWGG 2 cut(s) 660, 939
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 3 cut(s) 27, 42, 63
BcoDI GTCTC 4 cut(s) 270, 395, 428, 748
BfoI RGCGCY 2 cut(s) 149, 854
BisI GCNGC 8 cut(s) 101, 116, 119, 221, 224, 300, 322, 348
BlpI GCTNAGC 1 cut(s) 595
BlsI GCNGC 8 cut(s) 102, 117, 120, 222, 225, 301, 323, 349
Bme1390I CCNGG 5 cut(s) 27, 42, 63, 660, 939
Bme18I GGWCC 3 cut(s) 4, 44, 655
BmgT120I GGNCC 4 cut(s) 4, 44, 218, 655
BmrFI CCNGG 5 cut(s) 27, 42, 63, 660, 939
BmsI GCATC 3 cut(s) 653, 913, 1031
BpiI GAAGAC 2 cut(s) 534, 1052
BpmI CTGGAG 1 cut(s) 963
Bpu1102I GCTNAGC 1 cut(s) 595
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 173, 212
BpuMI CCSGG 3 cut(s) 27, 42, 63
BsaAI YACGTR 1 cut(s) 1042
BsaHI GRCGYC 4 cut(s) 279, 366, 531, 851
BsaI GGTCTC 2 cut(s) 395, 428
BsaJI CCNNGG 3 cut(s) 174, 568, 658
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 7 cut(s) 14, 175, 196, 864, 884, 885, 944
BseBI CCWGG 2 cut(s) 660, 939
BseDI CCNNGG 3 cut(s) 174, 568, 658
BseGI GGATG 3 cut(s) 639, 668, 703
BseLI CCNNNNNNNGG 7 cut(s) 14, 175, 196, 864, 884, 885, 944
BseRI GAGGAG 2 cut(s) 173, 625
BseXI GCAGC 2 cut(s) 130, 210
BsgI GTGCAG 2 cut(s) 737, 1013
Bsh1236I CGCG 3 cut(s) 87, 297, 350
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 6 cut(s) 220, 461, 573, 806, 868, 986
BshNI GGYRCC 3 cut(s) 112, 680, 850
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 3 cut(s) 159, 183, 565
BsiSI CCGG 8 cut(s) 15, 27, 42, 63, 197, 206, 335, 363
BslFI GGGAC 2 cut(s) 641, 706
BslI CCNNNNNNNGG 7 cut(s) 14, 175, 196, 864, 884, 885, 944
BsmAI GTCTC 4 cut(s) 270, 395, 428, 748
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 641, 706
BsnI GGCC 6 cut(s) 220, 461, 573, 806, 868, 986
Bso31I GGTCTC 2 cut(s) 395, 428
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 3 cut(s) 159, 183, 565
Bsp143I GATC 3 cut(s) 29, 312, 793
Bsp1720I GCTNAGC 1 cut(s) 595
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 6 cut(s) 220, 461, 573, 806, 868, 986
BspFNI CGCG 3 cut(s) 87, 297, 350
BspHI TCATGA 2 cut(s) 105, 993
BspPI GGATC 2 cut(s) 24, 37
BspQI GCTCTTC 3 cut(s) 380, 500, 933
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 3 cut(s) 112, 680, 850
BspTNI GGTCTC 2 cut(s) 395, 428
BssECI CCNNGG 3 cut(s) 174, 568, 658
BssMI GATC 3 cut(s) 29, 312, 793
BssNI GRCGYC 4 cut(s) 279, 366, 531, 851
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 660, 939
Bst4CI ACNGT 4 cut(s) 22, 112, 766, 900
Bst6I CTCTTC 4 cut(s) 380, 500, 933, 1012
BstACI GRCGYC 4 cut(s) 279, 366, 531, 851
BstBAI YACGTR 1 cut(s) 1042
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 6 cut(s) 133, 326, 392, 396, 565, 606
BstDEI CTNAG 2 cut(s) 595, 688
BstDSI CCRYGG 2 cut(s) 174, 568
BstF5I GGATG 3 cut(s) 639, 668, 703
BstFNI CGCG 3 cut(s) 87, 297, 350
BstH2I RGCGCY 2 cut(s) 149, 854
BstHHI GCGC 4 cut(s) 148, 299, 352, 853
BstKTI GATC 3 cut(s) 32, 315, 796
BstMAI GTCTC 4 cut(s) 270, 395, 428, 748
BstMBI GATC 3 cut(s) 29, 312, 793
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 5 cut(s) 154, 347, 605, 649, 1019
BstNI CCWGG 2 cut(s) 660, 939
BstSCI CCNGG 5 cut(s) 25, 40, 61, 658, 937
BstUI CGCG 3 cut(s) 87, 297, 350
BstV1I GCAGC 2 cut(s) 130, 210
BstV2I GAAGAC 2 cut(s) 534, 1052
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 6 cut(s) 220, 461, 573, 806, 868, 986
BtgI CCRYGG 2 cut(s) 174, 568
BtsCI GGATG 3 cut(s) 639, 668, 703
BtsI GCAGTG 1 cut(s) 917
BtsIMutI CAGTG 2 cut(s) 807, 917
Cac8I GCNNGC 6 cut(s) 133, 326, 392, 396, 565, 606
CciI TCATGA 2 cut(s) 105, 993
CfoI GCGC 4 cut(s) 148, 299, 352, 853
Cfr13I GGNCC 4 cut(s) 4, 44, 218, 655
CseI GACGC 2 cut(s) 355, 539
Csp6I GTAC 2 cut(s) 23, 681
CspCI CAANNNNNGTGG 2 cut(s) 893, 928
CviAII CATG 5 cut(s) 106, 175, 265, 713, 994
CviQI GTAC 2 cut(s) 23, 681
DdeI CTNAG 2 cut(s) 595, 688
DinI GGCGCC 1 cut(s) 852
DpnI GATC 3 cut(s) 31, 314, 795
DpnII GATC 3 cut(s) 29, 312, 793
EaeI YGGCCR 4 cut(s) 459, 571, 804, 866
Eam1104I CTCTTC 4 cut(s) 380, 500, 933, 1012
EarI CTCTTC 4 cut(s) 380, 500, 933, 1012
Ecl136II GAGCTC 3 cut(s) 157, 181, 563
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 986
Eco24I GRGCYC 3 cut(s) 159, 183, 565
Eco31I GGTCTC 2 cut(s) 395, 428
Eco47I GGWCC 3 cut(s) 4, 44, 655
Eco53kI GAGCTC 3 cut(s) 157, 181, 563
Eco57I CTGAAG 1 cut(s) 993
Eco72I CACGTG 1 cut(s) 1042
EcoICRI GAGCTC 3 cut(s) 157, 181, 563
EcoRII CCWGG 2 cut(s) 658, 937
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 3 cut(s) 159, 183, 565
EgeI GGCGCC 1 cut(s) 852
EheI GGCGCC 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 5 cut(s) 109, 178, 268, 716, 997
FaqI GGGAC 2 cut(s) 641, 706
FatI CATG 5 cut(s) 105, 174, 264, 712, 993
FauI CCCGC 1 cut(s) 168
FbaI TGATCA 1 cut(s) 793
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 8 cut(s) 101, 116, 119, 221, 224, 300, 322, 348
FokI GGATG 3 cut(s) 646, 675, 710
FriOI GRGCYC 3 cut(s) 159, 183, 565
Fsp4HI GCNGC 8 cut(s) 101, 116, 119, 221, 224, 300, 322, 348
GlaI GCGC 4 cut(s) 147, 298, 351, 852
GluI GCNGC 8 cut(s) 101, 116, 119, 221, 224, 300, 322, 348
GsuI CTGGAG 1 cut(s) 963
HaeII RGCGCY 2 cut(s) 149, 854
HaeIII GGCC 6 cut(s) 220, 461, 573, 806, 868, 986
HapII CCGG 8 cut(s) 15, 27, 42, 63, 197, 206, 335, 363
HgaI GACGC 2 cut(s) 355, 539
HhaI GCGC 4 cut(s) 148, 299, 352, 853
Hin1I GRCGYC 4 cut(s) 279, 366, 531, 851
Hin1II CATG 5 cut(s) 109, 178, 268, 716, 997
Hin6I GCGC 4 cut(s) 146, 297, 350, 851
HinP1I GCGC 4 cut(s) 146, 297, 350, 851
HincII GTYRAC 2 cut(s) 498, 769
HindII GTYRAC 2 cut(s) 498, 769
HinfI GANTC 2 cut(s) 66, 407
HpaII CCGG 8 cut(s) 15, 27, 42, 63, 197, 206, 335, 363
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 3 cut(s) 498, 553, 769
Hpy188III TCNNGA 6 cut(s) 106, 152, 310, 695, 980, 994
Hpy8I GTNNAC 3 cut(s) 498, 553, 769
Hpy99I CGWCG 5 cut(s) 284, 358, 427, 430, 460
HpyAV CCTTC 4 cut(s) 148, 373, 478, 942
HpyCH4III ACNGT 4 cut(s) 22, 112, 766, 900
HpyCH4IV ACGT 4 cut(s) 279, 555, 730, 1041
HpyCH4V TGCA 5 cut(s) 666, 718, 829, 1002, 1030
HpyF10VI GCNNNNNNNGC 5 cut(s) 154, 347, 605, 649, 1019
HpyF3I CTNAG 2 cut(s) 595, 688
HpySE526I ACGT 4 cut(s) 279, 555, 730, 1041
Hsp92I GRCGYC 4 cut(s) 279, 366, 531, 851
Hsp92II CATG 5 cut(s) 109, 178, 268, 716, 997
HspAI GCGC 4 cut(s) 146, 297, 350, 851
KasI GGCGCC 1 cut(s) 850
KpnI GGTACC 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 3 cut(s) 29, 312, 793
LguI GCTCTTC 3 cut(s) 380, 500, 933
LmnI GCTCC 7 cut(s) 140, 162, 178, 186, 199, 888, 1051
Lsp1109I GCAGC 2 cut(s) 130, 210
LweI GCATC 3 cut(s) 653, 913, 1031
MaeII ACGT 4 cut(s) 279, 555, 730, 1041
MaeIII GTNAC 2 cut(s) 833, 1037
MalI GATC 3 cut(s) 31, 314, 795
MboI GATC 3 cut(s) 29, 312, 793
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 3 cut(s) 159, 183, 565
MlsI TGGCCA 3 cut(s) 573, 806, 868
MluCI AATT 7 cut(s) 80, 253, 621, 777, 797, 872, 1015
MluNI TGGCCA 3 cut(s) 573, 806, 868
Mly113I GGCGCC 1 cut(s) 851
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 316
Mox20I TGGCCA 3 cut(s) 573, 806, 868
MscI TGGCCA 3 cut(s) 573, 806, 868
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 2 cut(s) 110, 921
Msp20I TGGCCA 3 cut(s) 573, 806, 868
MspA1I CMGCKG 2 cut(s) 100, 223
MspI CCGG 8 cut(s) 15, 27, 42, 63, 197, 206, 335, 363
MspR9I CCNGG 5 cut(s) 27, 42, 63, 660, 939
MvaI CCWGG 2 cut(s) 660, 939
MvnI CGCG 3 cut(s) 87, 297, 350
MwoI GCNNNNNNNGC 5 cut(s) 154, 347, 605, 649, 1019
NarI GGCGCC 1 cut(s) 851
NciI CCSGG 3 cut(s) 27, 42, 63
NcoI CCATGG 1 cut(s) 174
NdeII GATC 3 cut(s) 29, 312, 793
NlaIII CATG 5 cut(s) 109, 178, 268, 716, 997
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 1 cut(s) 1037
NspV TTCGAA 1 cut(s) 410
PagI TCATGA 2 cut(s) 105, 993
PceI AGGCCT 1 cut(s) 986
PciSI GCTCTTC 3 cut(s) 380, 500, 933
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 565
PfeI GAWTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 8 cut(s) 102, 117, 120, 222, 225, 301, 323, 349
PleI GAGTC 1 cut(s) 60
PluTI GGCGCC 1 cut(s) 854
PmaCI CACGTG 1 cut(s) 1042
PmlI CACGTG 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 1042
PshBI ATTAAT 1 cut(s) 624
Psp124BI GAGCTC 3 cut(s) 159, 183, 565
Psp6I CCWGG 2 cut(s) 658, 937
PspCI CACGTG 1 cut(s) 1042
PspGI CCWGG 2 cut(s) 658, 937
PspPI GGNCC 4 cut(s) 4, 44, 218, 655
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 2 cut(s) 24, 682
RsaNI GTAC 2 cut(s) 23, 681
RseI CAYNNNNRTG 2 cut(s) 110, 921
SacI GAGCTC 3 cut(s) 159, 183, 565
SalI GTCGAC 1 cut(s) 767
SapI GCTCTTC 3 cut(s) 380, 500, 933
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 8 cut(s) 101, 116, 119, 221, 224, 300, 322, 348
Sau3AI GATC 3 cut(s) 29, 312, 793
Sau96I GGNCC 4 cut(s) 4, 44, 218, 655
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 5 cut(s) 27, 42, 63, 660, 939
SduI GDGCHC 3 cut(s) 159, 183, 565
SfaNI GCATC 3 cut(s) 653, 913, 1031
SfoI GGCGCC 1 cut(s) 852
SfuI TTCGAA 1 cut(s) 410
SinI GGWCC 3 cut(s) 4, 44, 655
SmiMI CAYNNNNRTG 2 cut(s) 110, 921
SmlI CTYRAG 2 cut(s) 152, 227
SmoI CTYRAG 2 cut(s) 152, 227
Sse9I AATT 7 cut(s) 80, 253, 621, 777, 797, 872, 1015
SseBI AGGCCT 1 cut(s) 986
SspDI GGCGCC 1 cut(s) 850
SstI GAGCTC 3 cut(s) 159, 183, 565
StuI AGGCCT 1 cut(s) 986
StyD4I CCNGG 5 cut(s) 25, 40, 61, 658, 937
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 4 cut(s) 22, 112, 766, 900
TaiI ACGT 4 cut(s) 282, 558, 733, 1044
TaqI TCGA 8 cut(s) 69, 282, 311, 356, 410, 428, 559, 768
TaqII GACCGA 1 cut(s) 419
TasI AATT 7 cut(s) 80, 253, 621, 777, 797, 872, 1015
TauI GCSGC 6 cut(s) 103, 118, 223, 302, 324, 350
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 2 cut(s) 814, 917
TseFI GTSAC 1 cut(s) 1037
TseI GCWGC 2 cut(s) 118, 223
Tsp45I GTSAC 1 cut(s) 1037
TspDTI ATGAA 4 cut(s) 650, 714, 920, 961
TspGWI ACGGA 2 cut(s) 202, 530
TspRI CASTG 2 cut(s) 814, 917
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 3 cut(s) 4, 44, 655
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 2 cut(s) 872, 1015
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XmiI GTMKAC 1 cut(s) 768
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.