AT3G57800

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21407782 .. 21411904
4123 bp
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UTR
Exon/CDS
Intron
AT3G57800.2

Sequence Viewer

Length: 1281 bp
ATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAACCAATAGGCCTTGAATCGCTACATCTCGGTGACGAATTTCGGCAACTAGTGACGACTTTACCTCCCGAGAACCCCGGCGGTTCGTTCACGGCTTTGCTTGAGCTTCCACCTACACAAGCAGTGGAGCTTCTCCATTTCACTGATTCTTCGTCTTCTCAACAAGCGGCAGTGACAGGGATCGGTGGAGAGATTCCTCCGCCGCTTCACTCTTTCGGTGGGACATTGGCTTTTCCTTCTAACTCAGTTCTCATGGAGCGAGCAGCTCGTTTCTCGGTGATTGCCACTGAGCAACAAAACGGAAATATCTCCGGGGAGACTCCGACGAGCTCTGTACCTTCCAATTCAAGTGCTAATCTCGACAGAGTCAAGACGGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCGATTGAGAATCAAATCCCTTGCCCTAACCAGAACAATCGAAATGGGAAGAGGAAAGATTTCGAAAAGAAGGGTAAAAGCTCGACGAAGAAGAACAAAAGCTCTGAAGAGAACGAGAAGCTGCCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGTTACAGGAACTGGTCCCAGGCTGTGATAAGGGGACAGATTTTGGTGGAAAGATCAAGATCAAAGTGTGTTTTGGGGTCCATCTTTTGATGATAAGTGGGAAAAAAGTTGCAATCTTTCTATGGAAGGTGAGCTGTGAGGACTTGATTGATTGTTCCTTTAGCCCCCCTAGGATTCAAGGTACCGCGCTGGTGCTGGATGAAATCATTAACCATGTCCAGTCATTACAACGTCAAGTGGAGATGCTATCAATGAGACTTGCTGCGGTAAACCCCAGAATCGACTTCAATCTCGACACCATATTGGCTTCAGAAAACGGTTCTTTAATGGATGGGAGCTTCAATGCCGCACCAATGCAGCTTGCTTGGCCTCAGCAAGCCATTGAGACCGAACAGTCCTTTCATCACCGGCAACTGCAACAACCACCAACACAACAATGGCCTTTTGACGGCTTGAACCAGCCGGTATGGGGAAGAGAAGAGGATCAAGCTCATGGCAATGATAACAGCAATTTGATGGCAGTTTCTGAAAATGTAATGGTGGCTTCTGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTGTAA

Protein Analysis

426

Amino Acids

46.57

Weight (kDa)

5.92

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 214 - 261 2.2e-06 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 219 - 264 2.4e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1087
Acc65I GGTACC 1 cut(s) 875
AccB1I GGYRCC 1 cut(s) 875
AccII CGCG 1 cut(s) 881
AciI CCGC 9 cut(s) 36, 135, 221, 254, 257, 457, 879, 959, 1041
AclWI GGATC 4 cut(s) 12, 24, 242, 1185
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 600, 987
AfaI GTAC 2 cut(s) 390, 877
AfiI CCNNNNNNNGG 3 cut(s) 1142, 1163, 1261
AgsI TTSAA 6 cut(s) 71, 402, 872, 982, 1036, 1150
AhlI ACTAGT 1 cut(s) 103
AjnI CCWGG 1 cut(s) 712
Alw21I GWGCWC 2 cut(s) 386, 619
Alw26I GTCTC 4 cut(s) 365, 434, 943, 1073
AlwI GGATC 4 cut(s) 12, 24, 242, 1185
AlwNI CAGNNNCTG 2 cut(s) 706, 1220
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 3 cut(s) 64, 1061, 1133
ApeKI GCWGC 4 cut(s) 317, 595, 956, 1051
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 533
Asp718I GGTACC 1 cut(s) 875
AspA2I CCTAGG 1 cut(s) 863
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 3 cut(s) 44, 709, 772
AsuC2I CCSGG 3 cut(s) 53, 132, 367
AsuHPI GGTGA 4 cut(s) 98, 343, 835, 1091
AsuII TTCGAA 1 cut(s) 537
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 3 cut(s) 44, 709, 772
AvrII CCTAGG 1 cut(s) 863
BanI GGYRCC 1 cut(s) 875
BanII GRGCYC 2 cut(s) 386, 619
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 386, 619
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 4 cut(s) 329, 582, 943, 1063
BccI CCATC 3 cut(s) 783, 1019, 1204
BceAI ACGGC 2 cut(s) 162, 1159
BciT130I CCWGG 1 cut(s) 714
BcnI CCSGG 3 cut(s) 53, 132, 367
BcoDI GTCTC 4 cut(s) 365, 434, 943, 1073
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 3 cut(s) 27, 104, 864
BisI GCNGC 7 cut(s) 222, 257, 318, 596, 957, 1041, 1052
BlnI CCTAGG 1 cut(s) 863
BlpI GCTNAGC 1 cut(s) 649
BlsI GCNGC 7 cut(s) 223, 258, 319, 597, 958, 1042, 1053
Bme1390I CCNGG 4 cut(s) 53, 132, 367, 714
Bme18I GGWCC 3 cut(s) 44, 709, 772
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 3 cut(s) 44, 709, 772
BmiI GGNNCC 5 cut(s) 57, 432, 711, 773, 877
BmrFI CCNGG 4 cut(s) 53, 132, 367, 714
BmsI GCATC 1 cut(s) 927
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 1065
Bpu1102I GCTNAGC 1 cut(s) 649
Bpu14I TTCGAA 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 3 cut(s) 53, 132, 367
BsaBI GATNNNNATC 1 cut(s) 752
BsaI GGTCTC 2 cut(s) 434, 1073
BsaJI CCNNGG 4 cut(s) 130, 366, 712, 863
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 3 cut(s) 1142, 1163, 1261
Bse118I RCCGGY 2 cut(s) 1101, 1156
Bse1I ACTGG 3 cut(s) 16, 711, 913
Bse3DI GCAATG 1 cut(s) 1198
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 4 cut(s) 130, 366, 712, 863
BseGI GGATG 2 cut(s) 898, 1030
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 3 cut(s) 1142, 1163, 1261
BseMI GCAATG 1 cut(s) 1198
BseMII CTCAG 5 cut(s) 312, 333, 429, 467, 1079
BseNI ACTGG 3 cut(s) 16, 711, 913
BseXI GCAGC 4 cut(s) 329, 582, 943, 1063
Bsh1236I CGCG 1 cut(s) 881
BshFI GGCC 3 cut(s) 66, 1063, 1135
BshNI GGYRCC 1 cut(s) 875
BsiHKAI GWGCWC 2 cut(s) 386, 619
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 6 cut(s) 33, 52, 132, 366, 1102, 1157
BslFI GGGAC 3 cut(s) 289, 695, 742
BslI CCNNNNNNNGG 3 cut(s) 1142, 1163, 1261
BsmAI GTCTC 4 cut(s) 365, 434, 943, 1073
BsmFI GGGAC 3 cut(s) 289, 695, 742
BsnI GGCC 3 cut(s) 66, 1063, 1135
Bso31I GGTCTC 2 cut(s) 434, 1073
BsoBI CYCGRG 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 537
Bsp1286I GDGCHC 2 cut(s) 386, 619
Bsp143I GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
Bsp1720I GCTNAGC 1 cut(s) 649
BspACI CCGC 9 cut(s) 36, 135, 221, 254, 257, 457, 879, 959, 1041
BspANI GGCC 3 cut(s) 66, 1063, 1135
BspCNI CTCAG 5 cut(s) 311, 334, 430, 466, 1078
BspFNI CGCG 1 cut(s) 881
BspLI GGNNCC 5 cut(s) 57, 432, 711, 773, 877
BspPI GGATC 4 cut(s) 12, 24, 242, 1185
BspT104I TTCGAA 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 875
BspTNI GGTCTC 2 cut(s) 434, 1073
BsrDI GCAATG 1 cut(s) 1198
BsrFI RCCGGY 2 cut(s) 1101, 1156
BsrI ACTGG 3 cut(s) 16, 711, 913
BssAI RCCGGY 2 cut(s) 1101, 1156
BssECI CCNNGG 4 cut(s) 130, 366, 712, 863
BssMI GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
BssT1I CCWWGG 1 cut(s) 863
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 48, 1013, 1089
Bst6I CTCTTC 5 cut(s) 518, 576, 661, 1162, 1167
BstBI TTCGAA 1 cut(s) 537
BstC8I GCNNGC 4 cut(s) 315, 435, 1056, 1071
BstDEI CTNAG 6 cut(s) 298, 342, 438, 453, 649, 1065
BstF5I GGATG 2 cut(s) 898, 1030
BstFNI CGCG 1 cut(s) 881
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 6 cut(s) 7, 32, 237, 750, 756, 1180
BstMAI GTCTC 4 cut(s) 365, 434, 943, 1073
BstMBI GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
BstMWI GCNNNNNNNGC 2 cut(s) 659, 1060
BstNI CCWGG 1 cut(s) 714
BstSCI CCNGG 4 cut(s) 51, 130, 365, 712
BstUI CGCG 1 cut(s) 881
BstV1I GCAGC 4 cut(s) 329, 582, 943, 1063
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 2 cut(s) 4, 29
BstYI RGATCY 2 cut(s) 4, 29
BsuRI GGCC 3 cut(s) 66, 1063, 1135
BtsCI GGATG 2 cut(s) 898, 1030
BtsI GCAGTG 2 cut(s) 183, 231
BtsIMutI CAGTG 4 cut(s) 183, 195, 231, 339
Cac8I GCNNGC 4 cut(s) 315, 435, 1056, 1071
CaiI CAGNNNCTG 2 cut(s) 706, 1220
CfoI GCGC 1 cut(s) 883
Cfr10I RCCGGY 2 cut(s) 1101, 1156
Cfr13I GGNCC 3 cut(s) 44, 709, 772
Csp6I GTAC 2 cut(s) 389, 876
CviAII CATG 3 cut(s) 307, 908, 1187
CviQI GTAC 2 cut(s) 389, 876
DdeI CTNAG 6 cut(s) 298, 342, 438, 453, 649, 1065
DpnI GATC 6 cut(s) 6, 31, 236, 749, 755, 1179
DpnII GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
DrdI GACNNNNNNGTC 1 cut(s) 1087
DseDI GACNNNNNNGTC 1 cut(s) 1087
Eam1104I CTCTTC 5 cut(s) 518, 576, 661, 1162, 1167
EarI CTCTTC 5 cut(s) 518, 576, 661, 1162, 1167
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 2 cut(s) 384, 617
Eco130I CCWWGG 1 cut(s) 863
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 2 cut(s) 386, 619
Eco31I GGTCTC 2 cut(s) 434, 1073
Eco47I GGWCC 3 cut(s) 44, 709, 772
Eco53kI GAGCTC 2 cut(s) 384, 617
Eco57I CTGAAG 2 cut(s) 600, 987
Eco88I CYCGRG 1 cut(s) 122
EcoICRI GAGCTC 2 cut(s) 384, 617
EcoRII CCWGG 1 cut(s) 712
EcoT14I CCWWGG 1 cut(s) 863
EcoT38I GRGCYC 2 cut(s) 386, 619
ErhI CCWWGG 1 cut(s) 863
FaeI CATG 3 cut(s) 310, 911, 1190
FaiI YATR 9 cut(s) 308, 601, 603, 645, 817, 909, 995, 1162, 1188
FaqI GGGAC 3 cut(s) 289, 695, 742
FatI CATG 3 cut(s) 306, 907, 1186
FauNDI CATATG 1 cut(s) 601
Fnu4HI GCNGC 7 cut(s) 222, 257, 318, 596, 957, 1041, 1052
FokI GGATG 2 cut(s) 905, 1037
FriOI GRGCYC 2 cut(s) 386, 619
Fsp4HI GCNGC 7 cut(s) 222, 257, 318, 596, 957, 1041, 1052
FspBI CTAG 3 cut(s) 27, 104, 864
GlaI GCGC 1 cut(s) 882
GluI GCNGC 7 cut(s) 222, 257, 318, 596, 957, 1041, 1052
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 3 cut(s) 66, 1063, 1135
HapII CCGG 6 cut(s) 33, 52, 132, 366, 1102, 1157
HhaI GCGC 1 cut(s) 883
Hin1II CATG 3 cut(s) 310, 911, 1190
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HpaII CCGG 6 cut(s) 33, 52, 132, 366, 1102, 1157
HphI GGTGA 4 cut(s) 98, 343, 835, 1091
Hpy166II GTNNAC 3 cut(s) 144, 607, 964
Hpy188I TCNGA 6 cut(s) 9, 378, 469, 580, 1006, 1222
Hpy188III TCNNGA 5 cut(s) 122, 413, 424, 751, 986
Hpy8I GTNNAC 3 cut(s) 144, 607, 964
Hpy99I CGWCG 3 cut(s) 382, 562, 624
HpyAV CCTTC 4 cut(s) 300, 402, 538, 814
HpyCH4III ACNGT 3 cut(s) 48, 1013, 1089
HpyCH4IV ACGT 2 cut(s) 609, 925
HpyCH4V TGCA 5 cut(s) 683, 806, 1051, 1111, 1252
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 1060
HpyF3I CTNAG 6 cut(s) 298, 342, 438, 453, 649, 1065
HpySE526I ACGT 2 cut(s) 609, 925
Hsp92II CATG 3 cut(s) 310, 911, 1190
HspAI GCGC 1 cut(s) 881
KpnI GGTACC 1 cut(s) 879
Kzo9I GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
LmnI GCTCC 6 cut(s) 23, 181, 310, 430, 1029, 1273
Lsp1109I GCAGC 4 cut(s) 329, 582, 943, 1063
LweI GCATC 1 cut(s) 927
MaeI CTAG 3 cut(s) 27, 104, 864
MaeII ACGT 2 cut(s) 609, 925
MaeIII GTNAC 4 cut(s) 86, 106, 226, 696
MalI GATC 6 cut(s) 6, 31, 236, 749, 755, 1179
MboI GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
MflI RGATCY 2 cut(s) 4, 29
MhlI GDGCHC 2 cut(s) 386, 619
MluCI AATT 4 cut(s) 92, 397, 1204, 1246
MlyI GAGTC 2 cut(s) 367, 429
MmeI TCCRAC 2 cut(s) 22, 401
MnlI CCTC 7 cut(s) 8, 129, 261, 519, 826, 1074, 1168
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 2 cut(s) 903, 1019
MslI CAYNNNNRTG 3 cut(s) 84, 1129, 1191
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 6 cut(s) 33, 52, 132, 366, 1102, 1157
MspR9I CCNGG 4 cut(s) 53, 132, 367, 714
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 881
MwoI GCNNNNNNNGC 2 cut(s) 659, 1060
NciI CCSGG 3 cut(s) 53, 132, 367
NdeI CATATG 1 cut(s) 601
NdeII GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
NlaIII CATG 3 cut(s) 310, 911, 1190
NlaIV GGNNCC 5 cut(s) 57, 432, 711, 773, 877
NmuCI GTSAC 3 cut(s) 86, 106, 226
NspV TTCGAA 1 cut(s) 537
PceI AGGCCT 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 8 cut(s) 71, 200, 247, 446, 470, 484, 868, 972
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 7 cut(s) 223, 258, 319, 597, 958, 1042, 1053
PleI GAGTC 2 cut(s) 367, 428
PpsI GAGTC 2 cut(s) 367, 428
Psp124BI GAGCTC 2 cut(s) 386, 619
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 5 cut(s) 57, 432, 711, 773, 877
PspPI GGNCC 3 cut(s) 44, 709, 772
PstNI CAGNNNCTG 2 cut(s) 706, 1220
PsuI RGATCY 2 cut(s) 4, 29
PsyI GACNNNGTC 1 cut(s) 419
RsaI GTAC 2 cut(s) 390, 877
RsaNI GTAC 2 cut(s) 389, 876
RseI CAYNNNNRTG 3 cut(s) 84, 1129, 1191
SacI GAGCTC 2 cut(s) 386, 619
SaqAI TTAA 2 cut(s) 903, 1019
SatI GCNGC 7 cut(s) 222, 257, 318, 596, 957, 1041, 1052
Sau3AI GATC 6 cut(s) 4, 29, 234, 747, 753, 1177
Sau96I GGNCC 3 cut(s) 44, 709, 772
SchI GAGTC 2 cut(s) 367, 429
ScrFI CCNGG 4 cut(s) 53, 132, 367, 714
SduI GDGCHC 2 cut(s) 386, 619
SfaNI GCATC 1 cut(s) 927
SfuI TTCGAA 1 cut(s) 537
SinI GGWCC 3 cut(s) 44, 709, 772
SmiMI CAYNNNNRTG 3 cut(s) 84, 1129, 1191
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SpeI ACTAGT 1 cut(s) 103
Sse9I AATT 4 cut(s) 92, 397, 1204, 1246
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 9 cut(s) 36, 135, 221, 254, 257, 457, 879, 959, 1041
SspMI CTAG 3 cut(s) 27, 104, 864
SstI GAGCTC 2 cut(s) 386, 619
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 4 cut(s) 51, 130, 365, 712
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 3 cut(s) 48, 1013, 1089
TaiI ACGT 2 cut(s) 612, 928
TaqI TCGA 6 cut(s) 414, 514, 537, 557, 975, 987
TaqII GACCGA 2 cut(s) 458, 1097
TasI AATT 4 cut(s) 92, 397, 1204, 1246
TauI GCSGC 3 cut(s) 224, 259, 1043
TfiI GAWTC 8 cut(s) 71, 200, 247, 446, 470, 484, 868, 972
Tru1I TTAA 2 cut(s) 903, 1019
Tru9I TTAA 2 cut(s) 903, 1019
TscAI CASTG 4 cut(s) 183, 202, 231, 346
TseFI GTSAC 3 cut(s) 86, 106, 226
TseI GCWGC 4 cut(s) 317, 595, 956, 1051
Tsp45I GTSAC 3 cut(s) 86, 106, 226
TspDTI ATGAA 4 cut(s) 438, 704, 909, 1085
TspGWI ACGGA 2 cut(s) 369, 443
TspRI CASTG 4 cut(s) 183, 202, 231, 346
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 3 cut(s) 44, 709, 772
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 1128
XmaJI CCTAGG 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 3 cut(s) 27, 104, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.