Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004976

Physical Location & Seq

Genomic Coordinates Forward (+)

26238680 .. 26239201

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACCCAACCGCCGGAAACGTACCCGGATCCGCTGTAACCGGACCCGATCACGAAGAACCCGGACTCGAGACTCTCCAATTCCGCGAGGAAATCCAGCGGCTGATGACGGTGCCGCCGGACAACGCCAGCTCCTTCACGGCGCTTCTGGAACTTCCGCCGACCCAAGCCATGGAGCTCCTCCACCTCTCGCCGGAGTCCGAACCTAATCCGGCTCCGGCCGCGGTTTCCGGCAAGCCGCCGCCACCGCCGCTGCTCGAGCCCCGCGCGCATCCTTTCAATTCCATCCTCACGTTTCCCAGCAACGCCGCCCTAATCGAACGCGCCGCCAAGTTCTCGATCTTCGGCGGCGGCGAGCAGTCGCCGGAGACGGGGGCCGTGCCGTCCAATCCCGGCGTCAACTTGGAGAAGGTGAAGAGCGAGCCTGCCGAGTCCGATTCGAACCCTAACTCGTCGCAGGAGACTAAGAACAACCAAAGGTCGTCGGCCAAGAGAAAGGAGCGAGAAAAGAAGGTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

173

Amino Acids

18.45

Weight (kDa)

5.04

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT3G57800 AT3G57800
fragaria_vesca	FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930
malus_domestica	MD12G1063900.v1.1 MD12G1064000.v1.1 MD14G1064200.v1.1
prunus_persica	Prupe.7G070200_v2.0.a1
pyrus_communis	pycom12g05580 pycom14g05190
rosa_chinensis	RchiOBHm_Chr3g0480751
rosa_laevigata	RLG00000023457
rosa_multiflora	Rmu_sc0003902.1_g000017
rosa_roxburghii	Rroxscaffold_6G00401100
rosa_rugosa	Rorug03G0185300 Rorug03G0185300
rosa_samantha	Rh3AG237400 Rh3BG270900 Rh3CG267000 Rh3CG267100 Rh3DG263000
rosa_wichuraiana	Rw3G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	5 cut(s)	87, 224, 267, 269, 324
AclWI	GGATC	2 cut(s)	24, 37
AcoI	YGGCCR	2 cut(s)	219, 486
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	4 cut(s)	14, 172, 193, 371
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	2 cut(s)	132, 178
AluI	AGCT	2 cut(s)	132, 178
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	65, 362, 455
AlwI	GGATC	2 cut(s)	24, 37
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	2 cut(s)	68, 257
AoxI	GGCC	3 cut(s)	219, 375, 486
ApeKI	GCWGC	1 cut(s)	253
AspLEI	GCGC	4 cut(s)	145, 269, 271, 326
AspS9I	GGNCC	3 cut(s)	4, 44, 375
AsuC2I	CCSGG	3 cut(s)	27, 63, 393
AsuHPI	GGTGA	1 cut(s)	424
AsuII	TTCGAA	1 cut(s)	440
AvaI	CYCGRG	2 cut(s)	68, 257
AvaII	GGWCC	2 cut(s)	4, 44
BamHI	GGATCC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	2 cut(s)	180, 264
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	3 cut(s)	156, 362, 367
BcnI	CCSGG	3 cut(s)	27, 63, 393
BcoDI	GTCTC	3 cut(s)	65, 362, 455
BfoI	RGCGCY	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	27, 63, 393
Bme18I	GGWCC	2 cut(s)	4, 44
BmeT110I	CYCGRG	2 cut(s)	68, 257
BmgT120I	GGNCC	3 cut(s)	4, 44, 375
BmiI	GGNNCC	6 cut(s)	6, 31, 46, 114, 216, 376
BmrFI	CCNGG	3 cut(s)	27, 63, 393
BmsI	GCATC	1 cut(s)	280
Bpu14I	TTCGAA	1 cut(s)	440
BpuMI	CCSGG	3 cut(s)	27, 63, 393
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	171, 222
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 172, 193, 371
BseDI	CCNNGG	2 cut(s)	171, 222
BseGI	GGATG	2 cut(s)	271, 285
BseLI	CCNNNNNNNGG	4 cut(s)	14, 172, 193, 371
BsePI	GCGCGC	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	299
Bsh1236I	CGCG	5 cut(s)	87, 224, 267, 269, 324
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	221, 377, 488
BshNI	GGYRCC	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	2 cut(s)	68, 257
BslI	CCNNNNNNNGG	4 cut(s)	14, 172, 193, 371
BsmAI	GTCTC	3 cut(s)	65, 362, 455
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	3 cut(s)	221, 377, 488
BsoBI	CYCGRG	2 cut(s)	68, 257
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	180, 264
Bsp143I	GATC	3 cut(s)	29, 49, 339
Bsp19I	CCATGG	1 cut(s)	171
BspANI	GGCC	3 cut(s)	221, 377, 488
BspFNI	CGCG	5 cut(s)	87, 224, 267, 269, 324
BspLI	GGNNCC	6 cut(s)	6, 31, 46, 114, 216, 376
BspPI	GGATC	2 cut(s)	24, 37
BspQI	GCTCTTC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	171, 222
BssHII	GCGCGC	1 cut(s)	267
BssMI	GATC	3 cut(s)	29, 49, 339
BssNI	GRCGYC	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	396
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	6 cut(s)	130, 236, 269, 356, 422, 426
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	2 cut(s)	171, 222
BstF5I	GGATG	2 cut(s)	271, 285
BstFNI	CGCG	5 cut(s)	87, 224, 267, 269, 324
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	4 cut(s)	145, 269, 271, 326
BstKTI	GATC	3 cut(s)	32, 52, 342
BstMAI	GTCTC	3 cut(s)	65, 362, 455
BstMBI	GATC	3 cut(s)	29, 49, 339
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 247, 250, 259, 268
BstSCI	CCNGG	3 cut(s)	25, 61, 391
BstUI	CGCG	5 cut(s)	87, 224, 267, 269, 324
BstV1I	GCAGC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	221, 377, 488
BtgI	CCRYGG	2 cut(s)	171, 222
BtsCI	GGATG	2 cut(s)	271, 285
Cac8I	GCNNGC	6 cut(s)	130, 236, 269, 356, 422, 426
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	4 cut(s)	145, 269, 271, 326
Cfr13I	GGNCC	3 cut(s)	4, 44, 375
Cfr42I	CCGCGG	1 cut(s)	225
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	3 cut(s)	31, 51, 341
DpnII	GATC	3 cut(s)	29, 49, 339
EaeI	YGGCCR	2 cut(s)	219, 486
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	180, 264
Eco47I	GGWCC	2 cut(s)	4, 44
Eco52I	CGGCCG	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	178
Eco88I	CYCGRG	2 cut(s)	68, 257
EcoICRI	GAGCTC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	180, 264
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	1 cut(s)	175
FaiI	YATR	1 cut(s)	173
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	272
FokI	GGATG	2 cut(s)	258, 272
FriOI	GRGCYC	2 cut(s)	180, 264
GlaI	GCGC	4 cut(s)	144, 268, 270, 325
GsaI	CCCAGC	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	221, 377, 488
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	4 cut(s)	145, 269, 271, 326
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	4 cut(s)	143, 267, 269, 324
HinP1I	GCGC	4 cut(s)	143, 267, 269, 324
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	5 cut(s)	66, 73, 197, 431, 437
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	202, 436
Hpy188III	TCNNGA	4 cut(s)	53, 70, 149, 337
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	2 cut(s)	457, 487
HpyAV	CCTTC	3 cut(s)	145, 403, 505
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	21, 293
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 247, 250, 259, 268
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	2 cut(s)	21, 293
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	4 cut(s)	143, 267, 269, 324
KspI	CCGCGG	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	29, 49, 339
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	5 cut(s)	137, 175, 183, 220, 499
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	2 cut(s)	21, 293
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	31, 51, 341
MboI	GATC	3 cut(s)	29, 49, 339
MboII	GAAGA	3 cut(s)	68, 334, 427
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	180, 264
MluCI	AATT	3 cut(s)	80, 280, 517
MlyI	GAGTC	4 cut(s)	60, 67, 206, 440
MnlI	CCTC	4 cut(s)	82, 191, 197, 299
MspA1I	CMGCKG	4 cut(s)	35, 100, 224, 253
MspR9I	CCNGG	3 cut(s)	27, 63, 393
MvnI	CGCG	5 cut(s)	87, 224, 267, 269, 324
MwoI	GCNNNNNNNGC	5 cut(s)	221, 247, 250, 259, 268
NciI	CCSGG	3 cut(s)	27, 63, 393
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	29, 49, 339
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	6 cut(s)	6, 31, 46, 114, 216, 376
NmeAIII	GCCGAG	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	440
PaeR7I	CTCGAG	2 cut(s)	68, 257
PauI	GCGCGC	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	437
PflMI	CCANNNNNTGG	1 cut(s)	172
PleI	GAGTC	4 cut(s)	60, 67, 205, 439
PpsI	GAGTC	4 cut(s)	60, 67, 205, 439
Psp124BI	GAGCTC	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	6 cut(s)	6, 31, 46, 114, 216, 376
PspPI	GGNCC	3 cut(s)	4, 44, 375
PspXI	VCTCGAGB	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	29
PteI	GCGCGC	1 cut(s)	267
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	180
SacII	CCGCGG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	410
Sau3AI	GATC	3 cut(s)	29, 49, 339
Sau96I	GGNCC	3 cut(s)	4, 44, 375
SchI	GAGTC	4 cut(s)	60, 67, 206, 440
ScrFI	CCNGG	3 cut(s)	27, 63, 393
SduI	GDGCHC	2 cut(s)	180, 264
SetI	ASST	9 cut(s)	24, 134, 180, 189, 208, 296, 414, 482, 516
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	2 cut(s)	68, 257
Sfr303I	CCGCGG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	440
SgrBI	CCGCGG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	4, 44
SlaI	CTCGAG	2 cut(s)	68, 257
SmlI	CTYRAG	2 cut(s)	68, 257
SmoI	CTYRAG	2 cut(s)	68, 257
Sse9I	AATT	3 cut(s)	80, 280, 517
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	25, 61, 391
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	24, 296
TaqI	TCGA	5 cut(s)	69, 258, 318, 338, 440
TasI	AATT	3 cut(s)	80, 280, 517
TfiI	GAWTC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	4, 44
XhoI	CTCGAG	2 cut(s)	68, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.