Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004976

Physical Location & Seq

Genomic Coordinates Reverse (-)

24067804 .. 24074449

Gene Structure 6646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGAGGGGGCCTCCGACACTTGCGAAGCGACCCGGGAAGGTGAACCCCACGGTTCGTGTTGGCGGAGGGGAGTTTCGTGCTCTCCAGACCAAGCAGTGGCGGGATGGTGGCGGCGTATGCTTGGAGAGATTGAGGTTTCTTCTGCAACGACGTCGAGGACTCGACCAAGTTTTTCGCAGGCTCCTATTGAAGCATTTCTCAACTGAGGGTGTGCTGGTGAATGAGGTGTGGTGGATCGGATCGAGGCTACGACGTTGGGATCGGTGCCTGCAGTTCTGGGGGCGTTTGGGCTCTGCGTCGTCGTGGCGGTATGGTTTGTTTCATTTGGTGGTGTCGGCATGGGATGCCCTCGGCTTAGGTTGTGATGACGAAGGTGCGTCGTGCTTTGTGGTGGCAATAAGGGTTCCGAGGTGGGTCTTGGCAACGCCGGCGGTGACTGGGCTGGAGGCTGAGACTGGACAGAGGATGGAGGTCTGGGCGGCGAAAGGTGGGCAGGAGGAAGTGCTGGGAAAATCGGTGGTAAACCCTAGTTTGGAACTAGGGTTGACCATCGGTTGGACTGGGCTGCTTTTTGGGGAGCAGCTGCCTGGGCCTAGGACAGGGATTGGGCCGAAGGTAAAAACTGGGACTGGGCTATGTTCTGGGCCGAAGCTGACTGGGCCCAGGGCCGAAGCACCGGAATTGAGCTCAATTTTGCCGCTCATGGACCCAACCGCCGGAAACGTACCCGGATCCGCTGTACCCGGACCCGACCACGAAGAACCCGGACTCGAGACTCTCCAATTCCGCGAGGAAATCCAGCGGCTGATGACGGTGCCGCAGGACAACGCCAGCTCCTTCACGGCGCTTCTGGAACTTCCGCCGACCCAAGCCATGGAGCTCCTCCACCTCTCGCCGGAGTCCGAACCTAATCCGGCTCCGGTTCCGGCGGCGGTTTCCAGCGAGCCGCTGCTGCTCGAGCCCCGCGCACATCCTTTCAATTCCAGCCTCACGTTTCCCAGCAACGCCGCCCTGATCGAACGCGCCGCCAAGTTCTCGATCTTCGGCCGCGAGAAGTCGCAGGAGACGCGCGCCGTGCCGTCCAATCCCGGCGTCAACTTGGAGAAGGTGAAGAGCGAGCCTGCCGAGTCCGATTCGAACCCTAACTCGTCGCAGGAGACTAAGACCAACCAAAGGTCGTCGGCCAAGAGAAAGGAGCGAGAAAAGAAGGTCAAGGTATCAATGAAAAAGAGCAAAATTGAAGCTAAGGAAGATGCTGACAAGATTCCCTATGTTCACGTTCGAGCTCGCCGGGGTCAAGCTACAGATAGCCATAGTTTAGCAGAGCGAGCGAGGAGAGAGAAAATTAATGCGAGGATGAAGTTGCTACAGGAGCTGGTCCCAGGATGCAATAAGATTTCAGGTACTGCCTTAGTTCTGGATGAAATCATCAATCATGTGCAGTCCCTACAACGTCAAGTTGAGTTCTTATCGATGAGACTTGCGACAGTCGACCCAAGAATTGATAGCAACCTTGATCATTTATTGGCCACTGAAAGTCTATCTCTAATGCAAAGTAACTTCTCCAATATGGCTCCACCCATTATGTGGCCAGAACTTCCCATCAATGGGAACAGACAACAGTATCAACAGCAATGGCATTTTGATGCTCTTCATCAGCCAGGTTGGGGGAGGGAAGAAGATAATCATATTTTCATTACTCCAGAGGCCTCACTCATCAGTTGCAACTCTTCGGCAAATTCAGCATCTCTGCACACAGGTCACGTGAAGACGGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

594

Amino Acids

65.46

Weight (kDa)

8.86

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	437 - 484	6.6e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	442 - 487	7.2e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT2G42300 AT3G57800 AT3G57800
fragaria_vesca	FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930 FvH4_6g22930
malus_domestica	MD12G1063900.v1.1 MD12G1064000.v1.1 MD14G1064200.v1.1
prunus_persica	Prupe.7G070200_v2.0.a1
pyrus_communis	pycom12g05580 pycom14g05190
rosa_chinensis	RchiOBHm_Chr3g0480751
rosa_laevigata	RLG00000023457
rosa_multiflora	Rmu_sc0003902.1_g000017
rosa_roxburghii	Rroxscaffold_6G00401100
rosa_rugosa	Rorug03G0185300 Rorug03G0185300
rosa_samantha	Rh3AG237400 Rh3BG270900 Rh3CG267000 Rh3CG267100 Rh3DG263000
rosa_wichuraiana	Rw3G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	154
AccB1I	GGYRCC	2 cut(s)	264, 814
AccB7I	CCANNNNNTGG	4 cut(s)	96, 555, 874, 1587
AccBSI	CCGCTC	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	1491
AccII	CGCG	6 cut(s)	789, 966, 1023, 1050, 1069, 1071
AclWI	GGATC	5 cut(s)	242, 247, 267, 726, 739
AcoI	YGGCCR	4 cut(s)	1045, 1182, 1527, 1589
AcsI	RAATTY	1 cut(s)	1738
AcvI	CACGTG	1 cut(s)	1765
AcyI	GRCGYC	2 cut(s)	151, 1092
AfaI	GTAC	3 cut(s)	726, 741, 1405
AgsI	TTSAA	3 cut(s)	190, 979, 1241
AjnI	CCWGG	4 cut(s)	586, 662, 1381, 1660
Alw21I	GWGCWC	4 cut(s)	82, 689, 882, 1288
Alw26I	GTCTC	5 cut(s)	446, 767, 1058, 1151, 1471
AlwI	GGATC	5 cut(s)	242, 247, 267, 726, 739
AlwNI	CAGNNNCTG	3 cut(s)	805, 1375, 1406
Ama87I	CYCGRG	3 cut(s)	32, 770, 956
ApaI	GGGCCC	1 cut(s)	663
ApeKI	GCWGC	5 cut(s)	565, 580, 583, 949, 952
ApoI	RAATTY	1 cut(s)	1738
AseI	ATTAAT	1 cut(s)	1347
Asp700I	GAANNNNTTC	1 cut(s)	194
AspA2I	CCTAGG	1 cut(s)	593
AspLEI	GCGC	5 cut(s)	847, 968, 1025, 1071, 1073
AsuC2I	CCSGG	7 cut(s)	33, 34, 729, 744, 765, 1089, 1292
AsuHPI	GGTGA	4 cut(s)	52, 229, 445, 1120
AsuII	TTCGAA	1 cut(s)	1136
AvaI	CYCGRG	3 cut(s)	32, 770, 956
AvaII	GGWCC	3 cut(s)	706, 746, 1378
AvrII	CCTAGG	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	663
BaeI	ACNNNNGTAYC	2 cut(s)	1607, 1640
BalI	TGGCCA	2 cut(s)	1529, 1591
BamHI	GGATCC	1 cut(s)	731
BanI	GGYRCC	2 cut(s)	264, 814
BanII	GRGCYC	6 cut(s)	293, 663, 689, 882, 963, 1288
BbrPI	CACGTG	1 cut(s)	1765
BbsI	GAAGAC	1 cut(s)	1775
Bbv12I	GWGCWC	4 cut(s)	82, 689, 882, 1288
BbvI	GCAGC	5 cut(s)	552, 570, 592, 936, 939
BccI	CCATC	4 cut(s)	98, 460, 557, 1610
BceAI	ACGGC	3 cut(s)	858, 1058, 1063
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	4 cut(s)	588, 664, 1383, 1662
BclI	TGATCA	1 cut(s)	1516
BcnI	CCSGG	7 cut(s)	33, 34, 729, 744, 765, 1089, 1292
BcoDI	GTCTC	5 cut(s)	446, 767, 1058, 1151, 1471
BfaI	CTAG	3 cut(s)	528, 539, 594
BfmI	CTRYAG	3 cut(s)	269, 1302, 1367
BfoI	RGCGCY	1 cut(s)	848
BlnI	CCTAGG	1 cut(s)	593
Bme18I	GGWCC	3 cut(s)	706, 746, 1378
BmeT110I	CYCGRG	3 cut(s)	32, 770, 956
BmrI	ACTGGG	5 cut(s)	447, 570, 633, 639, 666
BmsI	GCATC	5 cut(s)	334, 1243, 1376, 1636, 1754
BmuI	ACTGGG	5 cut(s)	447, 570, 633, 639, 666
BpiI	GAAGAC	1 cut(s)	1775
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	3 cut(s)	68, 464, 1686
Bpu10I	CCTNAGC	2 cut(s)	355, 1245
Bpu14I	TTCGAA	1 cut(s)	1136
BpuMI	CCSGG	7 cut(s)	33, 34, 729, 744, 765, 1089, 1292
Bsa29I	ATCGAT	1 cut(s)	1472
BsaAI	YACGTR	1 cut(s)	1765
BsaHI	GRCGYC	2 cut(s)	151, 1092
BsaWI	WCCGGW	2 cut(s)	676, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	6 cut(s)	442, 460, 565, 628, 634, 661
Bse3DI	GCAATG	1 cut(s)	1640
BseBI	CCWGG	4 cut(s)	588, 664, 1383, 1662
BseCI	ATCGAT	1 cut(s)	1472
BseGI	GGATG	7 cut(s)	109, 349, 471, 970, 1362, 1391, 1426
BseMI	GCAATG	1 cut(s)	1640
BseMII	CTCAG	2 cut(s)	195, 441
BseNI	ACTGG	6 cut(s)	442, 460, 565, 628, 634, 661
BsePI	GCGCGC	1 cut(s)	1069
BseRI	GAGGAG	2 cut(s)	872, 1348
BseSI	GKGCMC	1 cut(s)	663
BseX3I	CGGCCG	1 cut(s)	1045
BseXI	GCAGC	5 cut(s)	552, 570, 592, 936, 939
BseYI	CCCAGC	2 cut(s)	505, 998
BsgI	GTGCAG	2 cut(s)	1460, 1736
Bsh1236I	CGCG	6 cut(s)	789, 966, 1023, 1050, 1069, 1071
Bsh1285I	CGRYCG	1 cut(s)	1048
BshNI	GGYRCC	2 cut(s)	264, 814
BshVI	ATCGAT	1 cut(s)	1472
BsiEI	CGRYCG	1 cut(s)	1048
BsiHKAI	GWGCWC	4 cut(s)	82, 689, 882, 1288
BsiHKCI	CYCGRG	3 cut(s)	32, 770, 956
BslFI	GGGAC	3 cut(s)	640, 1364, 1429
BsmAI	GTCTC	5 cut(s)	446, 767, 1058, 1151, 1471
BsmBI	CGTCTC	1 cut(s)	1058
BsmFI	GGGAC	3 cut(s)	640, 1364, 1429
BsoBI	CYCGRG	3 cut(s)	32, 770, 956
Bsp119I	TTCGAA	1 cut(s)	1136
Bsp120I	GGGCCC	1 cut(s)	659
Bsp1286I	GDGCHC	7 cut(s)	82, 293, 663, 689, 882, 963, 1288
Bsp143I	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
Bsp19I	CCATGG	1 cut(s)	873
BspCNI	CTCAG	2 cut(s)	196, 442
BspDI	ATCGAT	1 cut(s)	1472
BspFNI	CGCG	6 cut(s)	789, 966, 1023, 1050, 1069, 1071
BspMAI	CTGCAG	1 cut(s)	273
BspPI	GGATC	5 cut(s)	242, 247, 267, 726, 739
BspQI	GCTCTTC	2 cut(s)	1106, 1656
BspT104I	TTCGAA	1 cut(s)	1136
BspT107I	GGYRCC	2 cut(s)	264, 814
BsrBI	CCGCTC	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	1640
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	6 cut(s)	442, 460, 565, 628, 634, 661
BssAI	RCCGGY	1 cut(s)	427
BssHII	GCGCGC	1 cut(s)	1069
BssMI	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
BssNI	GRCGYC	2 cut(s)	151, 1092
BssT1I	CCWWGG	2 cut(s)	593, 873
Bst2UI	CCWGG	4 cut(s)	588, 664, 1383, 1662
Bst4CI	ACNGT	4 cut(s)	52, 814, 1489, 1623
Bst6I	CTCTTC	3 cut(s)	1106, 1656, 1735
BstACI	GRCGYC	2 cut(s)	151, 1092
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	1765
BstBI	TTCGAA	1 cut(s)	1136
BstDEI	CTNAG	6 cut(s)	204, 355, 450, 1161, 1245, 1411
BstDSI	CCRYGG	2 cut(s)	48, 873
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	7 cut(s)	109, 349, 471, 970, 1362, 1391, 1426
BstFNI	CGCG	6 cut(s)	789, 966, 1023, 1050, 1069, 1071
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	5 cut(s)	847, 968, 1025, 1071, 1073
BstKTI	GATC	7 cut(s)	237, 242, 262, 734, 1017, 1041, 1519
BstMAI	GTCTC	5 cut(s)	446, 767, 1058, 1151, 1471
BstMBI	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
BstMCI	CGRYCG	1 cut(s)	1048
BstNI	CCWGG	4 cut(s)	588, 664, 1383, 1662
BstSFI	CTRYAG	3 cut(s)	269, 1302, 1367
BstSLI	GKGCMC	1 cut(s)	663
BstUI	CGCG	6 cut(s)	789, 966, 1023, 1050, 1069, 1071
BstV1I	GCAGC	5 cut(s)	552, 570, 592, 936, 939
BstV2I	GAAGAC	1 cut(s)	1775
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BstZI	CGGCCG	1 cut(s)	1045
Bsu15I	ATCGAT	1 cut(s)	1472
BsuTUI	ATCGAT	1 cut(s)	1472
BtgI	CCRYGG	2 cut(s)	48, 873
BtsCI	GGATG	7 cut(s)	109, 349, 471, 970, 1362, 1391, 1426
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 1530
CaiI	CAGNNNCTG	3 cut(s)	805, 1375, 1406
CfoI	GCGC	5 cut(s)	847, 968, 1025, 1071, 1073
Cfr10I	RCCGGY	1 cut(s)	427
Cfr9I	CCCGGG	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	1472
CseI	GACGC	4 cut(s)	285, 366, 1075, 1081
Csp6I	GTAC	3 cut(s)	725, 740, 1404
CviAII	CATG	4 cut(s)	339, 703, 874, 1436
CviQI	GTAC	3 cut(s)	725, 740, 1404
DdeI	CTNAG	6 cut(s)	204, 355, 450, 1161, 1245, 1411
DpnI	GATC	7 cut(s)	236, 241, 261, 733, 1016, 1040, 1518
DpnII	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
EaeI	YGGCCR	4 cut(s)	1045, 1182, 1527, 1589
EagI	CGGCCG	1 cut(s)	1045
Eam1104I	CTCTTC	3 cut(s)	1106, 1656, 1735
EarI	CTCTTC	3 cut(s)	1106, 1656, 1735
EciI	GGCGGA	2 cut(s)	78, 849
Ecl136II	GAGCTC	3 cut(s)	687, 880, 1286
EclXI	CGGCCG	1 cut(s)	1045
Eco130I	CCWWGG	2 cut(s)	593, 873
Eco147I	AGGCCT	1 cut(s)	1709
Eco24I	GRGCYC	6 cut(s)	293, 663, 689, 882, 963, 1288
Eco47I	GGWCC	3 cut(s)	706, 746, 1378
Eco52I	CGGCCG	1 cut(s)	1045
Eco53kI	GAGCTC	3 cut(s)	687, 880, 1286
Eco72I	CACGTG	1 cut(s)	1765
Eco88I	CYCGRG	3 cut(s)	32, 770, 956
EcoICRI	GAGCTC	3 cut(s)	687, 880, 1286
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	4 cut(s)	586, 662, 1381, 1660
EcoT14I	CCWWGG	2 cut(s)	593, 873
EcoT38I	GRGCYC	6 cut(s)	293, 663, 689, 882, 963, 1288
ErhI	CCWWGG	2 cut(s)	593, 873
Esp3I	CGTCTC	1 cut(s)	1058
FaeI	CATG	4 cut(s)	342, 706, 877, 1439
FaqI	GGGAC	3 cut(s)	640, 1364, 1429
FatI	CATG	4 cut(s)	338, 702, 873, 1435
FauI	CCCGC	2 cut(s)	93, 971
FbaI	TGATCA	1 cut(s)	1516
FblI	GTMKAC	1 cut(s)	1491
FokI	GGATG	7 cut(s)	116, 356, 478, 957, 1369, 1398, 1433
FriOI	GRGCYC	6 cut(s)	293, 663, 689, 882, 963, 1288
FspBI	CTAG	3 cut(s)	528, 539, 594
GlaI	GCGC	5 cut(s)	846, 967, 1024, 1070, 1072
GsaI	CCCAGC	2 cut(s)	509, 1002
GsuI	CTGGAG	3 cut(s)	68, 464, 1686
HaeII	RGCGCY	1 cut(s)	848
HgaI	GACGC	4 cut(s)	285, 366, 1075, 1081
HhaI	GCGC	5 cut(s)	847, 968, 1025, 1071, 1073
Hin1I	GRCGYC	2 cut(s)	151, 1092
Hin1II	CATG	4 cut(s)	342, 706, 877, 1439
Hin6I	GCGC	5 cut(s)	845, 966, 1023, 1069, 1071
HinP1I	GCGC	5 cut(s)	845, 966, 1023, 1069, 1071
HincII	GTYRAC	3 cut(s)	546, 1096, 1492
HindII	GTYRAC	3 cut(s)	546, 1096, 1492
HinfI	GANTC	7 cut(s)	159, 768, 775, 899, 1127, 1133, 1264
HphI	GGTGA	4 cut(s)	52, 229, 445, 1120
Hpy166II	GTNNAC	6 cut(s)	43, 523, 546, 1096, 1276, 1492
Hpy188I	TCNGA	5 cut(s)	15, 239, 408, 904, 1132
Hpy188III	TCNNGA	6 cut(s)	85, 772, 851, 1036, 1418, 1703
Hpy8I	GTNNAC	6 cut(s)	43, 523, 546, 1096, 1276, 1492
Hpy99I	CGWCG	8 cut(s)	153, 156, 255, 301, 304, 382, 1153, 1183
HpyAV	CCTTC	6 cut(s)	31, 365, 607, 847, 1099, 1201
HpyCH4III	ACNGT	4 cut(s)	52, 814, 1489, 1623
HpyCH4IV	ACGT	7 cut(s)	151, 253, 723, 992, 1278, 1453, 1764
HpyCH4V	TGCA	7 cut(s)	145, 271, 1389, 1441, 1552, 1725, 1753
HpyF3I	CTNAG	6 cut(s)	204, 355, 450, 1161, 1245, 1411
HpySE526I	ACGT	7 cut(s)	151, 253, 723, 992, 1278, 1453, 1764
Hsp92I	GRCGYC	2 cut(s)	151, 1092
Hsp92II	CATG	4 cut(s)	342, 706, 877, 1439
HspAI	GCGC	5 cut(s)	845, 966, 1023, 1069, 1071
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	1516
Kzo9I	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
LguI	GCTCTTC	2 cut(s)	1106, 1656
Lsp1109I	GCAGC	5 cut(s)	552, 570, 592, 936, 939
LweI	GCATC	5 cut(s)	334, 1243, 1376, 1636, 1754
MaeI	CTAG	3 cut(s)	528, 539, 594
MaeII	ACGT	7 cut(s)	151, 253, 723, 992, 1278, 1453, 1764
MaeIII	GTNAC	3 cut(s)	433, 1556, 1760
MalI	GATC	7 cut(s)	236, 241, 261, 733, 1016, 1040, 1518
MbiI	CCGCTC	1 cut(s)	700
MboI	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	7 cut(s)	82, 293, 663, 689, 882, 963, 1288
MlsI	TGGCCA	2 cut(s)	1529, 1591
MluCI	AATT	8 cut(s)	680, 690, 782, 979, 1236, 1344, 1500, 1738
MluNI	TGGCCA	2 cut(s)	1529, 1591
MlyI	GAGTC	5 cut(s)	153, 762, 769, 908, 1136
MmeI	TCCRAC	2 cut(s)	38, 536
Mox20I	TGGCCA	2 cut(s)	1529, 1591
MreI	CGCCGGCG	1 cut(s)	427
MroNI	GCCGGC	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	194
MscI	TGGCCA	2 cut(s)	1529, 1591
MseI	TTAA	1 cut(s)	1347
MslI	CAYNNNNRTG	1 cut(s)	1644
Msp20I	TGGCCA	2 cut(s)	1529, 1591
MspA1I	CMGCKG	4 cut(s)	583, 737, 802, 949
MvaI	CCWGG	4 cut(s)	588, 664, 1383, 1662
MvnI	CGCG	6 cut(s)	789, 966, 1023, 1050, 1069, 1071
NaeI	GCCGGC	1 cut(s)	429
NciI	CCSGG	7 cut(s)	33, 34, 729, 744, 765, 1089, 1292
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	342, 706, 877, 1439
NmeAIII	GCCGAG	2 cut(s)	330, 1150
NmuCI	GTSAC	2 cut(s)	433, 1760
NspV	TTCGAA	1 cut(s)	1136
PaeR7I	CTCGAG	2 cut(s)	770, 956
PasI	CCCWGGG	1 cut(s)	663
PauI	GCGCGC	1 cut(s)	1069
PceI	AGGCCT	1 cut(s)	1709
PciSI	GCTCTTC	2 cut(s)	1106, 1656
PdiI	GCCGGC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	1133, 1264
PflMI	CCANNNNNTGG	4 cut(s)	96, 555, 874, 1587
PleI	GAGTC	5 cut(s)	153, 762, 769, 907, 1135
PmaCI	CACGTG	1 cut(s)	1765
PmlI	CACGTG	1 cut(s)	1765
PpsI	GAGTC	5 cut(s)	153, 762, 769, 907, 1135
Ppu21I	YACGTR	1 cut(s)	1765
PshBI	ATTAAT	1 cut(s)	1347
Psp124BI	GAGCTC	3 cut(s)	689, 882, 1288
Psp6I	CCWGG	4 cut(s)	586, 662, 1381, 1660
PspCI	CACGTG	1 cut(s)	1765
PspFI	CCCAGC	2 cut(s)	505, 998
PspGI	CCWGG	4 cut(s)	586, 662, 1381, 1660
PspOMI	GGGCCC	1 cut(s)	659
PspXI	VCTCGAGB	1 cut(s)	956
PstI	CTGCAG	1 cut(s)	273
PstNI	CAGNNNCTG	3 cut(s)	805, 1375, 1406
PsuI	RGATCY	1 cut(s)	731
PteI	GCGCGC	1 cut(s)	1069
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	3 cut(s)	726, 741, 1405
RsaNI	GTAC	3 cut(s)	725, 740, 1404
RseI	CAYNNNNRTG	1 cut(s)	1644
SacI	GAGCTC	3 cut(s)	689, 882, 1288
SalI	GTCGAC	1 cut(s)	1490
SapI	GCTCTTC	2 cut(s)	1106, 1656
SaqAI	TTAA	1 cut(s)	1347
Sau3AI	GATC	7 cut(s)	234, 239, 259, 731, 1014, 1038, 1516
SchI	GAGTC	5 cut(s)	153, 762, 769, 908, 1136
SduI	GDGCHC	7 cut(s)	82, 293, 663, 689, 882, 963, 1288
SfaNI	GCATC	5 cut(s)	334, 1243, 1376, 1636, 1754
SfcI	CTRYAG	3 cut(s)	269, 1302, 1367
Sfr274I	CTCGAG	2 cut(s)	770, 956
SfuI	TTCGAA	1 cut(s)	1136
SgrAI	CRCCGGYG	1 cut(s)	427
SinI	GGWCC	3 cut(s)	706, 746, 1378
SlaI	CTCGAG	2 cut(s)	770, 956
SmaI	CCCGGG	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	1644
SmlI	CTYRAG	2 cut(s)	770, 956
SmoI	CTYRAG	2 cut(s)	770, 956
Sse9I	AATT	8 cut(s)	680, 690, 782, 979, 1236, 1344, 1500, 1738
SseBI	AGGCCT	1 cut(s)	1709
SspMI	CTAG	3 cut(s)	528, 539, 594
SstI	GAGCTC	3 cut(s)	689, 882, 1288
StuI	AGGCCT	1 cut(s)	1709
StyI	CCWWGG	2 cut(s)	593, 873
TaaI	ACNGT	4 cut(s)	52, 814, 1489, 1623
TaiI	ACGT	7 cut(s)	154, 256, 726, 995, 1281, 1456, 1767
TasI	AATT	8 cut(s)	680, 690, 782, 979, 1236, 1344, 1500, 1738
TfiI	GAWTC	2 cut(s)	1133, 1264
Tru1I	TTAA	1 cut(s)	1347
Tru9I	TTAA	1 cut(s)	1347
TscAI	CASTG	2 cut(s)	101, 1537
TseFI	GTSAC	2 cut(s)	433, 1760
TseI	GCWGC	5 cut(s)	565, 580, 583, 949, 952
Tsp45I	GTSAC	2 cut(s)	433, 1760
TspDTI	ATGAA	6 cut(s)	311, 1238, 1373, 1437, 1643, 1684
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	2 cut(s)	101, 1537
Van91I	CCANNNNNTGG	4 cut(s)	96, 555, 874, 1587
VpaK11BI	GGWCC	3 cut(s)	706, 746, 1378
VspI	ATTAAT	1 cut(s)	1347
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	1738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1584
XhoI	CTCGAG	2 cut(s)	770, 956
XmaI	CCCGGG	1 cut(s)	32
XmaJI	CCTAGG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	1491
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	3 cut(s)	528, 539, 594
ZraI	GACGTC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.