AT2G42350

zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015071
Physical Location & Seq
Forward (+)
17639001 .. 17640300
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42350.1

Sequence Viewer

Length: 654 bp
ATGAGCTCTAACAACAAAACTGATGATTCCGACGACCGTTCTTTCTGGCAAAACTCGACTTCTTACGATGCCAGCAGCAAGATTTTCCTCGTCACCACCGTTTCCTTCTCTATTATTATCATCATCGTGTTCGTTTATTATCTCTACGCAAAATTCGTTCTCCACCGTAGATCAGCCTTCCAAGACCTCTCCTTCTCTGTCGTTTCTCAGCCGCCAAAACGTGGCCTCGATTCTCTAGTCATCGCTTCTCTCCCAACGTTCGTGGTTGGAATCAAGAATGACGTGGCGGGTACGGAATGTGCGGTTTGTCTAAGCTTATTGGAGGAGAAAGATAATGCAAGGATGTTACCGAACTGCAAACACGTGTTCCACGTGTCTTGCGTTGACACGTGGCTCACCACGCAGTCCACTTGTCCCGTTTGTCGAACTGAAGCCGAGCCAAGTCATCCAAGGCTTGAGCCTGAGCCTAGGGAAGGGCCAGTTGGCGACTTTGCACCGCCGTTAGATTTCGCGGGGGTTGATAACAAAACCGGCGGATCATCGGTTTCGAGGTTAGACTCGTTCCGGAGGATTTTGACAAGGGAAAGATCTTCGAACAGGCGGGATCATTCTCGCGTTGACCAAGATCGTGAATTGGATATTGAAAGACAGTGA

Protein Analysis

217

Amino Acids

24.42

Weight (kDa)

5.96

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 99 - 142 5.8e-14 Ring finger domain
zf-RING_11 PF17123 99 - 128 3.9e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 99 - 141 9.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 99 - 143 7.1e-07 zinc-RING finger domain
zf-C3HC4 PF00097 100 - 141 6.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 107 - 142 7.6e-09 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 115 - 144 5.6e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42350 AT2G42360
fragaria_vesca FvH4_6g27024
malus_domestica MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica Prupe.3G125000_v2.0.a1
pyrus_communis pycom09g15940 pycom17g23670
rosa_chinensis RchiOBHm_Chr2g0128891
rosa_laevigata RLG00000019039
rosa_rugosa Rorug02G0282200
rosa_samantha Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana Rw2G027080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 2 cut(s) 512, 615
AccIII TCCGGA 1 cut(s) 564
AciI CCGC 7 cut(s) 212, 287, 302, 497, 512, 534, 601
AclI AACGTT 1 cut(s) 257
AclWI GGATC 2 cut(s) 544, 612
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 450
AcvI CACGTG 3 cut(s) 364, 373, 390
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 221, 473
AflIII ACRYGT 4 cut(s) 361, 363, 372, 387
AgsI TTSAA 1 cut(s) 644
AjiI CACGTC 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 2 cut(s) 6, 315
AluI AGCT 2 cut(s) 6, 315
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 2 cut(s) 544, 612
Aor13HI TCCGGA 1 cut(s) 564
AoxI GGCC 2 cut(s) 223, 476
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 85, 388
AsuII TTCGAA 1 cut(s) 593
AvrII CCTAGG 1 cut(s) 467
BanII GRGCYC 1 cut(s) 8
BbrPI CACGTG 3 cut(s) 364, 373, 390
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 484
BfaI CTAG 2 cut(s) 236, 468
BglII AGATCT 1 cut(s) 587
BisI GCNGC 2 cut(s) 76, 212
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 2 cut(s) 77, 213
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 476
BmsI GCATC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 476
BsaAI YACGTR 3 cut(s) 364, 373, 390
BsaJI CCNNGG 2 cut(s) 449, 467
BsaWI WCCGGW 1 cut(s) 564
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 473
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 479
BseAI TCCGGA 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 449, 467
BseGI GGATG 2 cut(s) 348, 445
BseLI CCNNNNNNNGG 2 cut(s) 221, 473
BseMII CTCAG 2 cut(s) 221, 453
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 2 cut(s) 512, 615
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 225, 478
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 531, 565
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 221, 473
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 2 cut(s) 225, 478
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 564
Bsp143I GATC 5 cut(s) 170, 536, 587, 604, 625
BspACI CCGC 7 cut(s) 212, 287, 302, 497, 512, 534, 601
BspANI GGCC 2 cut(s) 225, 478
BspCNI CTCAG 2 cut(s) 220, 454
BspEI TCCGGA 1 cut(s) 564
BspFNI CGCG 2 cut(s) 512, 615
BspPI GGATC 2 cut(s) 544, 612
BspT104I TTCGAA 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 449, 467
BssMI GATC 5 cut(s) 170, 536, 587, 604, 625
BssT1I CCWWGG 2 cut(s) 449, 467
Bst4CI ACNGT 4 cut(s) 38, 100, 167, 651
BstBAI YACGTR 3 cut(s) 364, 373, 390
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 207, 311, 462
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 348, 445
BstFNI CGCG 2 cut(s) 512, 615
BstKTI GATC 5 cut(s) 173, 539, 590, 607, 628
BstMBI GATC 5 cut(s) 170, 536, 587, 604, 625
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstUI CGCG 2 cut(s) 512, 615
BstV1I GCAGC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BsuRI GGCC 2 cut(s) 225, 478
BtgZI GCGATG 1 cut(s) 226
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 348, 445
Cac8I GCNNGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 1 cut(s) 291
CspCI CAANNNNNGTGG 4 cut(s) 243, 278, 359, 394
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 3 cut(s) 207, 311, 462
DpnI GATC 5 cut(s) 172, 538, 589, 606, 627
DpnII GATC 5 cut(s) 170, 536, 587, 604, 625
EciI GGCGGA 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 449, 467
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 450
Eco72I CACGTG 3 cut(s) 364, 373, 390
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 449, 467
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 449, 467
FaqI GGGAC 1 cut(s) 399
FauI CCCGC 3 cut(s) 280, 505, 594
Fnu4HI GCNGC 2 cut(s) 76, 212
FokI GGATG 2 cut(s) 355, 432
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 76, 212
FspBI CTAG 2 cut(s) 236, 468
GluI GCNGC 2 cut(s) 76, 212
HaeIII GGCC 2 cut(s) 225, 478
HapII CCGG 2 cut(s) 531, 565
HincII GTYRAC 2 cut(s) 385, 619
HindII GTYRAC 2 cut(s) 385, 619
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 4 cut(s) 26, 230, 270, 557
HpaII CCGG 2 cut(s) 531, 565
HphI GGTGA 2 cut(s) 85, 388
Hpy166II GTNNAC 3 cut(s) 385, 408, 619
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 274, 565, 629
Hpy8I GTNNAC 3 cut(s) 385, 408, 619
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 115, 187, 202, 467
HpyCH4III ACNGT 4 cut(s) 38, 100, 167, 651
HpyCH4IV ACGT 6 cut(s) 220, 257, 282, 363, 372, 389
HpyCH4V TGCA 3 cut(s) 338, 357, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpyF3I CTNAG 3 cut(s) 207, 311, 462
HpySE526I ACGT 6 cut(s) 220, 257, 282, 363, 372, 389
Kpn2I TCCGGA 1 cut(s) 564
Kzo9I GATC 5 cut(s) 170, 536, 587, 604, 625
LpnPI CCDG 7 cut(s) 31, 85, 474, 492, 544, 578, 583
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 236, 468
MaeII ACGT 6 cut(s) 220, 257, 282, 363, 372, 389
MaeIII GTNAC 2 cut(s) 91, 345
MalI GATC 5 cut(s) 172, 538, 589, 606, 627
MboI GATC 5 cut(s) 170, 536, 587, 604, 625
MboII GAAGA 1 cut(s) 582
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 152, 632
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 54, 247
MnlI CCTC 6 cut(s) 98, 197, 236, 316, 543, 561
MroI TCCGGA 1 cut(s) 564
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 2 cut(s) 531, 565
MvnI CGCG 2 cut(s) 512, 615
MwoI GCNNNNNNNGC 1 cut(s) 400
NdeII GATC 5 cut(s) 170, 536, 587, 604, 625
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 1 cut(s) 91
NspV TTCGAA 1 cut(s) 593
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 153, 369, 378
PfeI GAWTC 3 cut(s) 26, 230, 270
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 2 cut(s) 77, 213
PleI GAGTC 1 cut(s) 551
PmaCI CACGTG 3 cut(s) 364, 373, 390
PmlI CACGTG 3 cut(s) 364, 373, 390
PpsI GAGTC 1 cut(s) 551
Ppu21I YACGTR 3 cut(s) 364, 373, 390
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 257
PspCI CACGTG 3 cut(s) 364, 373, 390
PspPI GGNCC 1 cut(s) 476
PsuI RGATCY 1 cut(s) 587
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 76, 212
Sau3AI GATC 5 cut(s) 170, 536, 587, 604, 625
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 1 cut(s) 551
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 2 cut(s) 152, 632
SsiI CCGC 7 cut(s) 212, 287, 302, 497, 512, 534, 601
SspMI CTAG 2 cut(s) 236, 468
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 2 cut(s) 449, 467
TaaI ACNGT 4 cut(s) 38, 100, 167, 651
TaiI ACGT 6 cut(s) 223, 260, 285, 366, 375, 392
TaqI TCGA 5 cut(s) 56, 228, 424, 548, 593
TasI AATT 2 cut(s) 152, 632
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 3 cut(s) 26, 230, 270
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 308
Van91I CCANNNNNTGG 1 cut(s) 221
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 467
XspI CTAG 2 cut(s) 236, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.