Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Reverse (-)

41316698 .. 41318162

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG321800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCTTCTTCCTCTCACACAGATCCGATCATGCGCCTTCTCAACGAAATCGATGAAATTTCGAAGCCGTTCCCTTCTCATGATAAAGACCCGTATGACTTGAACAGCAAGATCATGCTCATCGCCATCGTTGCATTATCCGTCGTGGTTGTGCTGGTAGTACTCCTTCACACCTACGCAAGATGCGTCCTCAGACGCCAGTCTCTTCAGCGAGCTGCCGCCTTACGCCGCCTGGGTTCGACTGTGGCCCATGTCCAGTACTCTTCCGCCGAGCCACCTAAGACCGGCCTCGAGCCCTCCGTCATCGCCGCCTTGCCCGTCTTCGTATACAAGCGCGTGGAGGGTGAGGGACGTCATGAGGGCGATGCTGACGTCGAGTGTGCCGTGTGTCTGAGCATGTTGGAGGATGAAGAAATGGCGAGGTTGCTTCCCAATTGTAAGCACAGCTTCCATGCACAATGCATAGACACGTGGCTGAATTCTCACACCACTTGCCCTATCTGCCGGACGGAGGCGGAGCCCCGTATAGCTCTCCAGCCGGAGCGACGGGAGGGTCCTGTGGCCGGCGCAGCAGCCACGGCTCCACCGTTGGAGCGGGTGAACTCCGTCTTGTCATGTGCGGAAGAGACATCGGAAGACGGTAAAGCAATAAATAGTGGTTCCATTTCGAGGTTGAGTAGTTCTTTCAGAAGAATGCTTAGTAGAGAAAGATCTTCCAGAAGGGTTCAATCATATGGTCAAGAAGATGGTTTTGAAGATTTAGAGAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

257

Amino Acids

28.44

Weight (kDa)

5.94

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	126 - 169	3e-13	Ring finger domain
zf-C3HC4_2	PF13923	126 - 168	3.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	126 - 155	8.6e-10	RING-like zinc finger
zf-RING_5	PF14634	126 - 170	6.1e-06	zinc-RING finger domain
zf-rbx1	PF12678	127 - 169	5e-10	RING-H2 zinc finger domain
zf-C3HC4	PF00097	127 - 168	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	140 - 171	4.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	552
AatII	GACGTC	2 cut(s)	355, 375
AccBSI	CCGCTC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	336
AciI	CCGC	7 cut(s)	219, 229, 267, 309, 515, 595, 620
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	57, 478
AcuI	CTGAAG	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	471
AcyI	GRCGYC	3 cut(s)	196, 352, 372
AfaI	GTAC	2 cut(s)	162, 260
AfiI	CCNNNNNNNGG	4 cut(s)	284, 511, 563, 669
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	103, 728, 755
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	215, 447, 530
AluI	AGCT	3 cut(s)	215, 447, 530
Alw26I	GTCTC	3 cut(s)	207, 620, 760
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	246, 286, 561
ApeKI	GCWGC	3 cut(s)	215, 569, 572
ApoI	RAATTY	2 cut(s)	57, 478
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	3 cut(s)	36, 336, 569
AspS9I	GGNCC	2 cut(s)	247, 554
AsuHPI	GGTGA	2 cut(s)	356, 610
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	297, 522
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbrPI	CACGTG	1 cut(s)	471
BbsI	GAAGAC	2 cut(s)	313, 642
BbvI	GCAGC	3 cut(s)	202, 581, 584
BccI	CCATC	2 cut(s)	134, 740
BceAI	ACGGC	3 cut(s)	52, 368, 594
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	207, 620, 760
BglII	AGATCT	1 cut(s)	710
BisI	GCNGC	6 cut(s)	216, 219, 229, 309, 570, 573
BlsI	GCNGC	6 cut(s)	217, 220, 230, 310, 571, 574
BmcAI	AGTACT	2 cut(s)	162, 260
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	554
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	247, 554
BmiI	GGNNCC	4 cut(s)	519, 555, 582, 661
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	173, 355
BoxI	GACNNNNGTC	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	313, 642
BpmI	CTGGAG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	471
BsaHI	GRCGYC	3 cut(s)	196, 352, 372
BsaJI	CCNNGG	2 cut(s)	232, 576
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 511, 563, 669
Bse118I	RCCGGY	2 cut(s)	284, 563
Bse1I	ACTGG	2 cut(s)	199, 256
BseBI	CCWGG	1 cut(s)	233
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	232, 576
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	4 cut(s)	284, 511, 563, 669
BseMII	CTCAG	2 cut(s)	205, 383
BseNI	ACTGG	2 cut(s)	199, 256
BseXI	GCAGC	3 cut(s)	202, 581, 584
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	3 cut(s)	248, 288, 563
BshVI	ATCGAT	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	4 cut(s)	285, 505, 539, 564
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	4 cut(s)	284, 511, 563, 669
BsmAI	GTCTC	3 cut(s)	207, 620, 760
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	3 cut(s)	248, 288, 563
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	297, 522
Bsp143I	GATC	4 cut(s)	22, 27, 111, 710
BspACI	CCGC	7 cut(s)	219, 229, 267, 309, 515, 595, 620
BspANI	GGCC	3 cut(s)	248, 288, 563
BspCNI	CTCAG	2 cut(s)	204, 384
BspDI	ATCGAT	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	336
BspHI	TCATGA	2 cut(s)	79, 355
BspLI	GGNNCC	4 cut(s)	519, 555, 582, 661
BspPI	GGATC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	595
BsrFI	RCCGGY	2 cut(s)	284, 563
BsrI	ACTGG	2 cut(s)	199, 256
BssAI	RCCGGY	2 cut(s)	284, 563
BssECI	CCNNGG	2 cut(s)	232, 576
BssMI	GATC	4 cut(s)	22, 27, 111, 710
BssNAI	GTATAC	1 cut(s)	328
BssNI	GRCGYC	3 cut(s)	196, 352, 372
Bst1107I	GTATAC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	4 cut(s)	244, 588, 641, 771
Bst6I	CTCTTC	3 cut(s)	210, 268, 618
BstACI	GRCGYC	3 cut(s)	196, 352, 372
BstBAI	YACGTR	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	213, 565
BstDEI	CTNAG	4 cut(s)	191, 279, 392, 698
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	36, 336, 569
BstKTI	GATC	4 cut(s)	25, 30, 114, 713
BstMAI	GTCTC	3 cut(s)	207, 620, 760
BstMBI	GATC	4 cut(s)	22, 27, 111, 710
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 501, 569, 578
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	202, 581, 584
BstV2I	GAAGAC	2 cut(s)	313, 642
BstX2I	RGATCY	2 cut(s)	22, 710
BstYI	RGATCY	2 cut(s)	22, 710
BstZ17I	GTATAC	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	248, 288, 563
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	3 cut(s)	106, 289, 378
BtsCI	GGATG	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	213, 565
CciI	TCATGA	2 cut(s)	79, 355
CfoI	GCGC	3 cut(s)	36, 336, 569
Cfr10I	RCCGGY	2 cut(s)	284, 563
Cfr13I	GGNCC	2 cut(s)	247, 554
ClaI	ATCGAT	1 cut(s)	51
CseI	GACGC	2 cut(s)	175, 204
Csp6I	GTAC	2 cut(s)	161, 259
CviAII	CATG	8 cut(s)	31, 80, 115, 251, 356, 397, 452, 615
CviQI	GTAC	2 cut(s)	161, 259
DdeI	CTNAG	4 cut(s)	191, 279, 392, 698
DpnI	GATC	4 cut(s)	24, 29, 113, 712
DpnII	GATC	4 cut(s)	22, 27, 111, 710
DrdI	GACNNNNNNGTC	1 cut(s)	552
DseDI	GACNNNNNNGTC	1 cut(s)	552
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	3 cut(s)	210, 268, 618
EarI	CTCTTC	3 cut(s)	210, 268, 618
EciI	GGCGGA	2 cut(s)	256, 530
Eco24I	GRGCYC	2 cut(s)	297, 522
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	464
EcoT38I	GRGCYC	2 cut(s)	297, 522
FaeI	CATG	8 cut(s)	34, 83, 118, 254, 359, 400, 455, 618
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	8 cut(s)	30, 79, 114, 250, 355, 396, 451, 614
FauI	CCCGC	1 cut(s)	588
FauNDI	CATATG	1 cut(s)	733
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	6 cut(s)	216, 219, 229, 309, 570, 573
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	2 cut(s)	297, 522
Fsp4HI	GCNGC	6 cut(s)	216, 219, 229, 309, 570, 573
GlaI	GCGC	3 cut(s)	35, 335, 568
GluI	GCNGC	6 cut(s)	216, 219, 229, 309, 570, 573
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	248, 288, 563
HapII	CCGG	4 cut(s)	285, 505, 539, 564
HgaI	GACGC	2 cut(s)	175, 204
HhaI	GCGC	3 cut(s)	36, 336, 569
Hin1I	GRCGYC	3 cut(s)	196, 352, 372
Hin1II	CATG	8 cut(s)	34, 83, 118, 254, 359, 400, 455, 618
Hin6I	GCGC	3 cut(s)	34, 334, 567
HinP1I	GCGC	3 cut(s)	34, 334, 567
HpaII	CCGG	4 cut(s)	285, 505, 539, 564
HphI	GGTGA	2 cut(s)	356, 610
Hpy166II	GTNNAC	2 cut(s)	328, 601
Hpy188I	TCNGA	5 cut(s)	27, 194, 393, 634, 689
Hpy188III	TCNNGA	4 cut(s)	80, 356, 717, 740
Hpy8I	GTNNAC	2 cut(s)	328, 601
Hpy99I	CGWCG	3 cut(s)	146, 377, 549
HpyAV	CCTTC	4 cut(s)	47, 84, 176, 714
HpyCH4III	ACNGT	4 cut(s)	244, 588, 641, 771
HpyCH4IV	ACGT	3 cut(s)	352, 372, 470
HpyCH4V	TGCA	3 cut(s)	134, 455, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 501, 569, 578
HpyF3I	CTNAG	4 cut(s)	191, 279, 392, 698
HpySE526I	ACGT	3 cut(s)	352, 372, 470
Hsp92I	GRCGYC	3 cut(s)	196, 352, 372
Hsp92II	CATG	8 cut(s)	34, 83, 118, 254, 359, 400, 455, 618
HspAI	GCGC	3 cut(s)	34, 334, 567
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	22, 27, 111, 710
LmnI	GCTCC	4 cut(s)	517, 541, 586, 592
Lsp1109I	GCAGC	3 cut(s)	202, 581, 584
LweI	GCATC	2 cut(s)	173, 355
MaeII	ACGT	3 cut(s)	352, 372, 470
MalI	GATC	4 cut(s)	24, 29, 113, 712
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	4 cut(s)	22, 27, 111, 710
MfeI	CAATTG	1 cut(s)	433
MflI	RGATCY	2 cut(s)	22, 710
MhlI	GDGCHC	2 cut(s)	297, 522
MluCI	AATT	3 cut(s)	57, 433, 478
MmeI	TCCRAC	2 cut(s)	381, 570
Mph1103I	ATGCAT	1 cut(s)	464
MroNI	GCCGGC	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	4 cut(s)	285, 505, 539, 564
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	131, 501, 569, 578
NaeI	GCCGGC	1 cut(s)	565
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	4 cut(s)	22, 27, 111, 710
NgoMIV	GCCGGC	1 cut(s)	563
NlaIII	CATG	8 cut(s)	34, 83, 118, 254, 359, 400, 455, 618
NlaIV	GGNNCC	4 cut(s)	519, 555, 582, 661
NmeAIII	GCCGAG	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	2 cut(s)	79, 355
PcsI	WCGNNNNNNNCGW	4 cut(s)	183, 297, 381, 584
PctI	GAATGC	1 cut(s)	699
PdiI	GCCGGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	6 cut(s)	217, 220, 230, 310, 571, 574
PmaCI	CACGTG	1 cut(s)	471
PmlI	CACGTG	1 cut(s)	471
Ppu21I	YACGTR	1 cut(s)	471
PpuMI	RGGWCCY	1 cut(s)	554
PshAI	GACNNNNGTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	231
PspCI	CACGTG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	4 cut(s)	519, 555, 582, 661
PspPI	GGNCC	2 cut(s)	247, 554
PspPPI	RGGWCCY	1 cut(s)	554
PspXI	VCTCGAGB	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	22, 710
RsaI	GTAC	2 cut(s)	162, 260
RsaNI	GTAC	2 cut(s)	161, 259
SatI	GCNGC	6 cut(s)	216, 219, 229, 309, 570, 573
Sau3AI	GATC	4 cut(s)	22, 27, 111, 710
Sau96I	GGNCC	2 cut(s)	247, 554
ScaI	AGTACT	2 cut(s)	162, 260
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	297, 522
SfaNI	GCATC	2 cut(s)	173, 355
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	554
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	57, 433, 478
SsiI	CCGC	7 cut(s)	219, 229, 267, 309, 515, 595, 620
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	4 cut(s)	244, 588, 641, 771
TaiI	ACGT	3 cut(s)	355, 375, 473
TaqI	TCGA	6 cut(s)	51, 62, 239, 291, 375, 668
TasI	AATT	3 cut(s)	57, 433, 478
TatI	WGTACW	2 cut(s)	160, 258
TauI	GCSGC	3 cut(s)	221, 231, 311
TseI	GCWGC	3 cut(s)	215, 569, 572
TspDTI	ATGAA	2 cut(s)	69, 423
TspGWI	ACGGA	4 cut(s)	130, 289, 524, 595
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	2 cut(s)	57, 478
XceI	RCATGY	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	68
ZraI	GACGTC	2 cut(s)	353, 373
ZrmI	AGTACT	2 cut(s)	162, 260
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.