Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Forward (+)

11446660 .. 11447802

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTTCCTCCTTACACCCAAATCCGATGCGCCTCCTAAACGACGAAGACGAGAGTCGTCGAATTTATGATGAATTTCACAAAAACCCGTACGACTTGAACAGCAAGATCATGCTCACAGCCATCATCTCATTATCTGTCGTCGTTTTGTTAGTGATCGTGCTTCACACCTACGCAAGGTGTGTCCTCCGACGCCAGGCGCTTCGCCGCGCCTCCATGCGTCATCATCTAGGCTCGACCATGGCTCATGTCCACTTGGCGGAACAGCCCAAGACCGGCCTGGAGCCCTCCATCATTGCCGCCTTGCCCACTTTCGTTTTCACACGTGTGGACGGCCAGGACGACGGAGGAGCCAACGCAATAGAGTGCGCAGTGTGCTTGAGCATGTTAGATCATGATGAGGTGGCAAGGCTGCTTCCAAATTGCAAGCATAGTTTCCATGTGGAGTGCATAGACACGTGGCTGAATTCCCACACTACCTGCCCTATTTGCCGGACAGAGGCACAGCCGCGTCTCCAGCCTGAGCCACGGGAGGATCCGGTGGCAGGTGGGCCCACGGCTCCGCCTCTGGAGCCGCCATTGAATTCCGCGTTTCCATCATATATGGAAGGGACATCAGATGGTGCTGCCCAGTCCAGCTCTGGTACGAAAGCGAATGGCTCGATTTCGAGGTTGAGTTCTTTCAGAAGAATGCTTAGCAGGGACAGATCTTCAAGAAGGATTCAATCTTGTGGCCAAGAGGATGGTATAGAAGATTTAGAGAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

257

Amino Acids

28.38

Weight (kDa)

6.25

Isoelectric Point (pI)

68.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc16I	TGCGCA	1 cut(s)	370
Acc36I	ACCTGC	2 cut(s)	488, 536
AccII	CGCG	3 cut(s)	210, 511, 590
AciI	CCGC	7 cut(s)	208, 260, 300, 509, 563, 575, 588
AclWI	GGATC	2 cut(s)	530, 543
AcoI	YGGCCR	2 cut(s)	334, 733
AcsI	RAATTY	4 cut(s)	63, 74, 466, 583
AcvI	CACGTG	2 cut(s)	326, 459
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	2 cut(s)	92, 646
AfiI	CCNNNNNNNGG	6 cut(s)	177, 196, 259, 275, 499, 545
AflIII	ACRYGT	3 cut(s)	323, 325, 456
AgsI	TTSAA	4 cut(s)	100, 583, 714, 725
AjnI	CCWGG	3 cut(s)	195, 279, 336
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	1 cut(s)	639
AluI	AGCT	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	518, 757
AlwI	GGATC	2 cut(s)	530, 543
AoxI	GGCC	4 cut(s)	277, 334, 551, 733
ApaI	GGGCCC	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	412, 626
ApoI	RAATTY	4 cut(s)	63, 74, 466, 583
AspLEI	GCGC	4 cut(s)	33, 202, 212, 371
AspS9I	GGNCC	2 cut(s)	551, 552
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	735
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	2 cut(s)	288, 555
BbrPI	CACGTG	2 cut(s)	326, 459
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	399, 613
BccI	CCATC	5 cut(s)	131, 299, 604, 614, 737
BceAI	ACGGC	2 cut(s)	349, 573
BciT130I	CCWGG	3 cut(s)	197, 281, 338
BcoDI	GTCTC	2 cut(s)	518, 757
BfaI	CTAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	2 cut(s)	488, 536
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	6 cut(s)	208, 300, 413, 509, 575, 627
BlpI	GCTNAGC	1 cut(s)	695
BlsI	GCNGC	6 cut(s)	209, 301, 414, 510, 576, 628
Bme1390I	CCNGG	3 cut(s)	197, 281, 338
BmgT120I	GGNCC	2 cut(s)	551, 552
BmiI	GGNNCC	6 cut(s)	285, 352, 537, 553, 561, 573
BmrFI	CCNGG	3 cut(s)	197, 281, 338
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	3 cut(s)	302, 500, 590
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu1102I	GCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	400
BsaAI	YACGTR	2 cut(s)	326, 459
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	240, 527, 555
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	6 cut(s)	177, 196, 259, 275, 499, 545
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	197, 281, 338
BseDI	CCNNGG	3 cut(s)	240, 527, 555
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	6 cut(s)	177, 196, 259, 275, 499, 545
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	399, 613
Bsh1236I	CGCG	3 cut(s)	210, 511, 590
BshFI	GGCC	4 cut(s)	279, 336, 553, 735
BsiSI	CCGG	3 cut(s)	276, 493, 539
BsiWI	CGTACG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	625, 716
BslI	CCNNNNNNNGG	6 cut(s)	177, 196, 259, 275, 499, 545
BsmAI	GTCTC	2 cut(s)	518, 757
BsmBI	CGTCTC	1 cut(s)	518
BsmFI	GGGAC	2 cut(s)	625, 716
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	4 cut(s)	279, 336, 553, 735
Bsp120I	GGGCCC	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	288, 555
Bsp143I	GATC	5 cut(s)	108, 156, 391, 535, 707
Bsp1720I	GCTNAGC	1 cut(s)	695
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	7 cut(s)	208, 260, 300, 509, 563, 575, 588
BspANI	GGCC	4 cut(s)	279, 336, 553, 735
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	3 cut(s)	210, 511, 590
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	6 cut(s)	285, 352, 537, 553, 561, 573
BspMI	ACCTGC	2 cut(s)	488, 536
BspPI	GGATC	2 cut(s)	530, 543
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	240, 527, 555
BssMI	GATC	5 cut(s)	108, 156, 391, 535, 707
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	3 cut(s)	197, 281, 338
Bst4CI	ACNGT	1 cut(s)	768
BstACI	GRCGYC	1 cut(s)	193
BstBAI	YACGTR	2 cut(s)	326, 459
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	522, 695
BstDSI	CCRYGG	3 cut(s)	240, 527, 555
BstENI	CCTNNNNNAGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	748
BstFNI	CGCG	3 cut(s)	210, 511, 590
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	4 cut(s)	33, 202, 212, 371
BstKTI	GATC	5 cut(s)	111, 159, 394, 538, 710
BstMAI	GTCTC	2 cut(s)	518, 757
BstMBI	GATC	5 cut(s)	108, 156, 391, 535, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	375, 489, 517, 571
BstNI	CCWGG	3 cut(s)	197, 281, 338
BstNSI	RCATGY	1 cut(s)	388
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	195, 279, 336
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	3 cut(s)	210, 511, 590
BstV1I	GCAGC	2 cut(s)	399, 613
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	535, 707
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	2 cut(s)	535, 707
BsuRI	GGCC	4 cut(s)	279, 336, 553, 735
BtgI	CCRYGG	3 cut(s)	240, 527, 555
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	2 cut(s)	488, 536
Cac8I	GCNNGC	1 cut(s)	428
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	4 cut(s)	33, 202, 212, 371
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	551, 552
CseI	GACGC	3 cut(s)	201, 209, 500
Csp6I	GTAC	2 cut(s)	91, 645
CviAII	CATG	7 cut(s)	112, 217, 241, 248, 385, 395, 440
CviQI	GTAC	2 cut(s)	91, 645
DdeI	CTNAG	2 cut(s)	522, 695
DpnI	GATC	5 cut(s)	110, 158, 393, 537, 709
DpnII	GATC	5 cut(s)	108, 156, 391, 535, 707
EaeI	YGGCCR	2 cut(s)	334, 733
EciI	GGCGGA	2 cut(s)	275, 552
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	288, 555
Eco72I	CACGTG	2 cut(s)	326, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	175
EcoRI	GAATTC	2 cut(s)	466, 583
EcoRII	CCWGG	3 cut(s)	195, 279, 336
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	288, 555
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	7 cut(s)	115, 220, 244, 251, 388, 398, 443
FaqI	GGGAC	2 cut(s)	625, 716
FatI	CATG	7 cut(s)	111, 216, 240, 247, 384, 394, 439
Fnu4HI	GCNGC	6 cut(s)	208, 300, 413, 509, 575, 627
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	2 cut(s)	288, 555
Fsp4HI	GCNGC	6 cut(s)	208, 300, 413, 509, 575, 627
FspBI	CTAG	1 cut(s)	230
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	4 cut(s)	32, 201, 211, 370
GluI	GCNGC	6 cut(s)	208, 300, 413, 509, 575, 627
GsuI	CTGGAG	3 cut(s)	302, 500, 590
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	279, 336, 553, 735
HapII	CCGG	3 cut(s)	276, 493, 539
HgaI	GACGC	3 cut(s)	201, 209, 500
HhaI	GCGC	4 cut(s)	33, 202, 212, 371
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	7 cut(s)	115, 220, 244, 251, 388, 398, 443
Hin6I	GCGC	4 cut(s)	31, 200, 210, 369
HinP1I	GCGC	4 cut(s)	31, 200, 210, 369
HinfI	GANTC	2 cut(s)	55, 721
HpaII	CCGG	3 cut(s)	276, 493, 539
Hpy166II	GTNNAC	2 cut(s)	253, 331
Hpy188I	TCNGA	4 cut(s)	27, 191, 619, 686
Hpy188III	TCNNGA	3 cut(s)	395, 569, 714
Hpy8I	GTNNAC	2 cut(s)	253, 331
Hpy99I	CGWCG	5 cut(s)	47, 63, 146, 195, 347
HpyAV	CCTTC	2 cut(s)	602, 711
HpyCH4III	ACNGT	1 cut(s)	768
HpyCH4IV	ACGT	2 cut(s)	325, 458
HpyCH4V	TGCA	2 cut(s)	426, 450
HpyF10VI	GCNNNNNNNGC	4 cut(s)	375, 489, 517, 571
HpyF3I	CTNAG	2 cut(s)	522, 695
HpySE526I	ACGT	2 cut(s)	325, 458
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	7 cut(s)	115, 220, 244, 251, 388, 398, 443
HspAI	GCGC	4 cut(s)	31, 200, 210, 369
Kzo9I	GATC	5 cut(s)	108, 156, 391, 535, 707
LmnI	GCTCC	4 cut(s)	283, 350, 565, 571
Lsp1109I	GCAGC	2 cut(s)	399, 613
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	325, 458
MalI	GATC	5 cut(s)	110, 158, 393, 537, 709
MboI	GATC	5 cut(s)	108, 156, 391, 535, 707
MboII	GAAGA	4 cut(s)	59, 699, 702, 764
MflI	RGATCY	2 cut(s)	535, 707
MhlI	GDGCHC	2 cut(s)	288, 555
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	5 cut(s)	63, 74, 421, 466, 583
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	735
MslI	CAYNNNNRTG	1 cut(s)	326
Msp20I	TGGCCA	1 cut(s)	735
MspI	CCGG	3 cut(s)	276, 493, 539
MspR9I	CCNGG	3 cut(s)	197, 281, 338
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	3 cut(s)	197, 281, 338
MvnI	CGCG	3 cut(s)	210, 511, 590
MwoI	GCNNNNNNNGC	4 cut(s)	375, 489, 517, 571
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	108, 156, 391, 535, 707
NlaIII	CATG	7 cut(s)	115, 220, 244, 251, 388, 398, 443
NlaIV	GGNNCC	6 cut(s)	285, 352, 537, 553, 561, 573
NsbI	TGCGCA	1 cut(s)	370
NspI	RCATGY	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	326
PagI	TCATGA	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 339
PctI	GAATGC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	721
Pfl23II	CGTACG	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	209, 301, 414, 510, 576, 628
PleI	GAGTC	1 cut(s)	63
PmaCI	CACGTG	2 cut(s)	326, 459
PmlI	CACGTG	2 cut(s)	326, 459
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	2 cut(s)	326, 459
PshAI	GACNNNNGTC	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	195, 279, 336
PspCI	CACGTG	2 cut(s)	326, 459
PspGI	CCWGG	3 cut(s)	195, 279, 336
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	6 cut(s)	285, 352, 537, 553, 561, 573
PspOMI	GGGCCC	1 cut(s)	551
PspPI	GGNCC	2 cut(s)	551, 552
PsuI	RGATCY	2 cut(s)	535, 707
RsaI	GTAC	2 cut(s)	92, 646
RsaNI	GTAC	2 cut(s)	91, 645
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	6 cut(s)	208, 300, 413, 509, 575, 627
Sau3AI	GATC	5 cut(s)	108, 156, 391, 535, 707
Sau96I	GGNCC	2 cut(s)	551, 552
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	3 cut(s)	197, 281, 338
SduI	GDGCHC	2 cut(s)	288, 555
SetI	ASST	9 cut(s)	173, 182, 328, 405, 461, 482, 550, 641, 674
SfaNI	GCATC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	63, 74, 421, 466, 583
SsiI	CCGC	7 cut(s)	208, 260, 300, 509, 563, 575, 588
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	195, 279, 336
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	768
TaiI	ACGT	2 cut(s)	328, 461
TaqI	TCGA	4 cut(s)	61, 236, 662, 668
TasI	AATT	5 cut(s)	63, 74, 421, 466, 583
TauI	GCSGC	4 cut(s)	210, 302, 511, 577
TfiI	GAWTC	1 cut(s)	721
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	2 cut(s)	412, 626
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	175
XapI	RAATTY	4 cut(s)	63, 74, 466, 583
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	2 cut(s)	277, 638
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.