Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Reverse (-)

45178640 .. 45179392

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019039

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTTCTTCCTCTCACACAGATCCGATCATGCGCCTTCTCAACGAAGACCATGATCTTCCCCCGATGTTCCCTCAAAAAAACTTGTATGACTTAAACAGCAAGATCATGCTCATCGCCATCATTTCATTATCCGTCGTGGTTGTGGTGGTAGTACTCCTTCACACCTACGCAAGATGCGTCCTCAGACGCCAGTCTCTTCAGCGAGCTGCCGCCTTACGCCGCCTTGGTTCGACTGTGGCCCAAGTCCACTCTTCCGCCGAGCCACCCAAGACCGGCCTCGAGCCCTCCGTCATCGCCGCCTTGCCCTTCTTCTTATACAAGCGCGTGGAGGGTGAGGGACGTCATGAGGGTGATGCTGACGTCGAGTGTGCTGTGTGTCTAAGCATGTTGGAGGATGAAGAAATGGCGAGATTGCTTCCCAATTGTAAGCACAGCTTCCATGCACAATGCATAGACACGTGGCTGAATTCTCACACCACTTGCCCTATCTGCCGGACGGAGGCGGAGCCCCGTATGGCTCTCCAGCCGGAGCAGCGGGAGGGTCCTGTAGCCACGGCTCCGCCGTTGGAGCGGGTGAACTCCGTCTTGTCATGTGCGGAAGGGACATCGGAAGACGGTAAAGCAATAAATAGTGGTTCCATTTCGAGGTTGAGTAGTTCTTTCAGAAGAATTCTTAGTAGAGAAAGATCTTCCAGAAGGGTTCAATCATATGGTCAAGAAGATGGTTTTGAAGATTTAGAAAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

251

Amino Acids

27.81

Weight (kDa)

6.08

Isoelectric Point (pI)

65.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	123 - 166	2.9e-13	Ring finger domain
zf-C3HC4_2	PF13923	123 - 165	3.3e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	123 - 152	8.3e-10	RING-like zinc finger
zf-RING_5	PF14634	123 - 167	5.8e-06	zinc-RING finger domain
zf-rbx1	PF12678	124 - 166	4.8e-10	RING-H2 zinc finger domain
zf-C3HC4	PF00097	124 - 165	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	137 - 168	4e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	346, 366
AccBSI	CCGCTC	1 cut(s)	574
AccII	CGCG	1 cut(s)	327
AciI	CCGC	9 cut(s)	213, 223, 258, 300, 506, 538, 563, 574, 599
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	469, 672
AcuI	CTGAAG	1 cut(s)	185
AcvI	CACGTG	1 cut(s)	462
AcyI	GRCGYC	3 cut(s)	190, 343, 363
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	3 cut(s)	275, 502, 648
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	707, 734
AluBI	AGCT	2 cut(s)	209, 438
AluI	AGCT	2 cut(s)	209, 438
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	240, 277
ApeKI	GCWGC	2 cut(s)	209, 535
ApoI	RAATTY	2 cut(s)	469, 672
AspLEI	GCGC	2 cut(s)	36, 327
AspS9I	GGNCC	2 cut(s)	241, 545
AsuHPI	GGTGA	3 cut(s)	347, 365, 589
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	545
BanII	GRGCYC	2 cut(s)	288, 513
BarI	GAAGNNNNNNTAC	2 cut(s)	144, 176
BbrPI	CACGTG	1 cut(s)	462
BbsI	GAAGAC	2 cut(s)	54, 621
BbvI	GCAGC	2 cut(s)	196, 547
BccI	CCATC	2 cut(s)	128, 719
BceAI	ACGGC	2 cut(s)	550, 573
BcoDI	GTCTC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	549
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	5 cut(s)	210, 213, 223, 300, 536
BlsI	GCNGC	5 cut(s)	211, 214, 224, 301, 537
BmcAI	AGTACT	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	545
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	241, 545
BmiI	GGNNCC	4 cut(s)	510, 546, 561, 640
BmsI	GCATC	2 cut(s)	167, 346
BoxI	GACNNNNGTC	1 cut(s)	193
BpiI	GAAGAC	2 cut(s)	54, 621
BpmI	CTGGAG	1 cut(s)	509
BsaAI	YACGTR	1 cut(s)	462
BsaHI	GRCGYC	3 cut(s)	190, 343, 363
BsaJI	CCNNGG	2 cut(s)	226, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 502, 648
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	226, 555
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	275, 502, 648
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	196, 547
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	242, 279
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	3 cut(s)	276, 496, 530
BslFI	GGGAC	2 cut(s)	354, 619
BslI	CCNNNNNNNGG	3 cut(s)	275, 502, 648
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	2 cut(s)	354, 619
BsnI	GGCC	2 cut(s)	242, 279
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	288, 513
Bsp143I	GATC	5 cut(s)	22, 27, 55, 105, 689
BspACI	CCGC	9 cut(s)	213, 223, 258, 300, 506, 538, 563, 574, 599
BspANI	GGCC	2 cut(s)	242, 279
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	510, 546, 561, 640
BspPI	GGATC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	226, 555
BssMI	GATC	5 cut(s)	22, 27, 55, 105, 689
BssNI	GRCGYC	3 cut(s)	190, 343, 363
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	238, 620, 750
Bst6I	CTCTTC	2 cut(s)	204, 259
BstACI	GRCGYC	3 cut(s)	190, 343, 363
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	185, 383, 677
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	36, 327
BstKTI	GATC	5 cut(s)	25, 30, 58, 108, 692
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	5 cut(s)	22, 27, 55, 105, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	492, 535, 571
BstNSI	RCATGY	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	196, 547
BstV2I	GAAGAC	2 cut(s)	54, 621
BstX2I	RGATCY	2 cut(s)	22, 689
BstYI	RGATCY	2 cut(s)	22, 689
BsuRI	GGCC	2 cut(s)	242, 279
BtgI	CCRYGG	1 cut(s)	555
BtgZI	GCGATG	2 cut(s)	100, 280
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	207
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	2 cut(s)	36, 327
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	241, 545
CseI	GACGC	2 cut(s)	169, 198
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	7 cut(s)	31, 53, 109, 347, 388, 443, 594
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	185, 383, 677
DpnI	GATC	5 cut(s)	24, 29, 57, 107, 691
DpnII	GATC	5 cut(s)	22, 27, 55, 105, 689
Eam1104I	CTCTTC	2 cut(s)	204, 259
EarI	CTCTTC	2 cut(s)	204, 259
EciI	GGCGGA	3 cut(s)	247, 521, 552
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	288, 513
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	2 cut(s)	469, 672
EcoT14I	CCWWGG	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	455
EcoT38I	GRGCYC	2 cut(s)	288, 513
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	7 cut(s)	34, 56, 112, 350, 391, 446, 597
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	2 cut(s)	354, 619
FatI	CATG	7 cut(s)	30, 52, 108, 346, 387, 442, 593
FauI	CCCGC	2 cut(s)	531, 567
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	5 cut(s)	210, 213, 223, 300, 536
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	2 cut(s)	288, 513
Fsp4HI	GCNGC	5 cut(s)	210, 213, 223, 300, 536
GlaI	GCGC	2 cut(s)	35, 326
GluI	GCNGC	5 cut(s)	210, 213, 223, 300, 536
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	242, 279
HapII	CCGG	3 cut(s)	276, 496, 530
HgaI	GACGC	2 cut(s)	169, 198
HhaI	GCGC	2 cut(s)	36, 327
Hin1I	GRCGYC	3 cut(s)	190, 343, 363
Hin1II	CATG	7 cut(s)	34, 56, 112, 350, 391, 446, 597
Hin6I	GCGC	2 cut(s)	34, 325
HinP1I	GCGC	2 cut(s)	34, 325
HpaII	CCGG	3 cut(s)	276, 496, 530
HphI	GGTGA	3 cut(s)	347, 365, 589
Hpy166II	GTNNAC	2 cut(s)	250, 580
Hpy188I	TCNGA	4 cut(s)	27, 188, 613, 668
Hpy188III	TCNNGA	3 cut(s)	347, 696, 719
Hpy8I	GTNNAC	2 cut(s)	250, 580
Hpy99I	CGWCG	2 cut(s)	140, 368
HpyAV	CCTTC	5 cut(s)	47, 170, 319, 596, 693
HpyCH4III	ACNGT	3 cut(s)	238, 620, 750
HpyCH4IV	ACGT	3 cut(s)	343, 363, 461
HpyCH4V	TGCA	2 cut(s)	446, 453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	492, 535, 571
HpyF3I	CTNAG	3 cut(s)	185, 383, 677
HpySE526I	ACGT	3 cut(s)	343, 363, 461
Hsp92I	GRCGYC	3 cut(s)	190, 343, 363
Hsp92II	CATG	7 cut(s)	34, 56, 112, 350, 391, 446, 597
HspAI	GCGC	2 cut(s)	34, 325
Kzo9I	GATC	5 cut(s)	22, 27, 55, 105, 689
LmnI	GCTCC	4 cut(s)	508, 532, 565, 571
LpnPI	CCDG	7 cut(s)	206, 289, 509, 539, 543, 561, 709
Lsp1109I	GCAGC	2 cut(s)	196, 547
LweI	GCATC	2 cut(s)	167, 346
MaeII	ACGT	3 cut(s)	343, 363, 461
MalI	GATC	5 cut(s)	24, 29, 57, 107, 691
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	5 cut(s)	22, 27, 55, 105, 689
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	2 cut(s)	22, 689
MhlI	GDGCHC	2 cut(s)	288, 513
MluCI	AATT	3 cut(s)	424, 469, 672
MmeI	TCCRAC	2 cut(s)	372, 549
Mph1103I	ATGCAT	1 cut(s)	455
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	3 cut(s)	276, 496, 530
MunI	CAATTG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	492, 535, 571
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	5 cut(s)	22, 27, 55, 105, 689
NlaIII	CATG	7 cut(s)	34, 56, 112, 350, 391, 446, 597
NlaIV	GGNNCC	4 cut(s)	510, 546, 561, 640
NmeAIII	GCCGAG	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 288, 563
PkrI	GCNGC	5 cut(s)	211, 214, 224, 301, 537
PmaCI	CACGTG	1 cut(s)	462
PmlI	CACGTG	1 cut(s)	462
Ppu21I	YACGTR	1 cut(s)	462
PpuMI	RGGWCCY	1 cut(s)	545
PshAI	GACNNNNGTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	545
PspCI	CACGTG	1 cut(s)	462
PspN4I	GGNNCC	4 cut(s)	510, 546, 561, 640
PspPI	GGNCC	2 cut(s)	241, 545
PspPPI	RGGWCCY	1 cut(s)	545
PspXI	VCTCGAGB	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	22, 689
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	5 cut(s)	210, 213, 223, 300, 536
Sau3AI	GATC	5 cut(s)	22, 27, 55, 105, 689
Sau96I	GGNCC	2 cut(s)	241, 545
ScaI	AGTACT	1 cut(s)	156
SduI	GDGCHC	2 cut(s)	288, 513
SetI	ASST	7 cut(s)	170, 211, 346, 366, 440, 464, 653
SfaNI	GCATC	2 cut(s)	167, 346
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	545
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	3 cut(s)	424, 469, 672
SsiI	CCGC	9 cut(s)	213, 223, 258, 300, 506, 538, 563, 574, 599
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	238, 620, 750
TaiI	ACGT	3 cut(s)	346, 366, 464
TaqI	TCGA	4 cut(s)	233, 282, 366, 647
TasI	AATT	3 cut(s)	424, 469, 672
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	3 cut(s)	215, 225, 302
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseI	GCWGC	2 cut(s)	209, 535
TspDTI	ATGAA	2 cut(s)	117, 414
TspGWI	ACGGA	4 cut(s)	124, 280, 515, 574
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	469, 672
XceI	RCATGY	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	281
ZraI	GACGTC	2 cut(s)	344, 364
ZrmI	AGTACT	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.